Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0473500.2

Overview

Field	Value
Gene ID	LotjaGi3g1v0473500
Transcript ID	LotjaGi3g1v0473500.2
Related isoforms 1	LotjaGi3g1v0473500.1
Lotus japonicus genome version	Gifu v1.2
Description	transcription repressor; TAIR: AT3G52525.1 ovate family protein 6; Swiss-Prot: sp\|Q3EAL1\|OFP6_ARATH Transcription repressor OFP6; TrEMBL-Plants: tr\|I1LKN3\|I1LKN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0473500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:89035546..89038638) extracted from Lotus japonicus Gifu genome v1.2.

CCTTCATAAACCCCCTCCATGTACTCCAAACTCCAACCCAATTTTTCACCAAACATTTTCAAAAGATATATATAAACCCA ACCCCACACCTTCTTCTCCAACTCATCCTAATTAAATTTCACTTTCTATCCACTTTCTGTCTCCATTGTATATATCAAAG CTCTTCTCAAAGTTAGTGTGAATAGGAACCCTACCAACAACAACACCATCATCTACCTTTGCAAATCCTTTTATAAACCC AATATTTTTTTTTTTAATTCACTCTCACTATTGTTTATATTATCATATTTATATTTGTGTGTGTGTGTGAGTGTGATTAC CTACCAATGTCTTCCAATTCCAATGACAAGAAAAGTGTGTTGAGAATTCTATTCACAGCAAATGGAAGCTGTGGTTGTGG CAAAACAAAGGCAATTGAAGTGCACGAGCCAACCAAAATACCCAAAATACCCTCCACCCATCACAAAAAGACAACAACAA ACCAAACCAGCAGCAAGGCTTCCTCCACCACCACTTCCAACGACCACAACGGCGGCGCCATCTCCATCTCCTTCGACGAC GAAGACGAAGAATTCTCCTCCGCCACCATCTCCGACACCGAAACCGCCACCACCAACAAGAGCCTCAACCACCACCACCG CCACCACGTGGCGCCGAAACAGAGCCCTCTGCTGAACAGCGTGGCGGTGGAGAAGGACTCATCGGATCCGTATCACGATT TCCGGCACTCGATGCTGCAGATGATCTTCGAGAAGGAGATAGATTCGGAGGAAGATCTTCAAGATCTTCTACAGTGTTTT CTCCACCTGAATGCTGCGTGTTACCATCATGTTATTGTGAAGGCTTTCAATGAGATCTGTGAAGATGCGTTTTCCGATAA GGTTAGCACTGCTCCGGCGACGACGGAGCCTTCTCCGTCGCACAGGAACGGCCACTTCCTCAAAGGGAAGAGTGAGAGAA TTGGATAATGGTTACATGGACACGTTGTCTCTCTATTAAGGTACAATCAACAAGATCGATGTTATTAAAATATATAATTT TAGTGTGAATTTTTATGTCCCTTTAATTATTAATGTTTTAATTTTAGTAAAAATGCTCGAAACATTCACACGAGTTCCAC TAAAAATATGACAATTTAGTAAGACTTACATAAATTTTAATCAATCAATAAACTTTTTTATAATTAGTATGTTTTGGTAG CATTTCTCTTATATTTTAATGTATCTATTAGTTTAGGATATTTGTGGTTTTCCTTGTAAACAAAATTAAACTATATAGGC TATGTTTGATTTTGCTTCAAACATTGTTTGCTTTGTCTTGGAATTTGAGTTTCAAATTTCTAAAGCTTGAAACATGAATT GATGAATTGAAGGATGGGGCAAGTTAACGTTTAGTTCAGTTCATTTAAGTTGAACTGAAATACAAACATGCACATATTCA TTGGTTGTGTTTGTTTTGTTCTCGCAAATTTCCAACTCCATCGATACTAAATGAGAAATAAGAGATATAACAAGCGATAT CAATTGAAGAACAAAAGAGATATAAAAAAAAATTGAAATGGGATGAAAAAGGGTAAATGTATTAAAGTTGATATAAATAT CATACTCACTCATGAGAATGAGGATGGGAGAGCTAAGCTAGCGTATTGTCCATGGAATGTGTCTAGCTAACCCATGTGCA GGCATTGAATTCACAAGAGGGATGAGTTACAAGTAAACATCAAGGTTTTGAAAAGGATGATGTTTTCAATTGGTTTCGGT AAATTGTTGTTTCTAATTAAACAAAGGGTTAAATATGTTTTTTTCTTTCTTTCAACTATATAATGAATTAATTATTGAAT AACGTGAAGTTTTGGTCACTCAACCCATTTTAATAATGATTTGCAATGACATGTAGGTTTTAATGATGTGAATTTTTTCA TTTTTTAAATATTCATGTGAAATATACAAAGAACCAAAATAAAAAATAGTTAGCCTTTCATCATCTTCATCCCTCCTCAT CTTTCATAAATATTGATCAAGAACATGGGGTTATGATCAGTAACGTAAAAAAAAGTTGAAGATCTAGAAGATTTGCATAA TCTACACTTGAGCCTTCAATATACAAACAAAGCAAATGCAATGTTTTTAGTATTCTAGTAAAAGTCTACTTTCAAAAAAA AAAATCTAGTAAAAGTCTCATACACAGACGAATGATAAAAATGGTAGAATATGCTTACTTATGTATATGAATGAATTTTG GGTTATTGATGCTCAATGTTTCTTCATGAATGTATATTCTTAGGTGGAGTATGCTTTTTTAAAACAAAAAAATAGAATAA AGAGAAAACATTTCTAGACTATTGGATATGATAGAGTTCCAGATTTTATCGGGCTTAGCGTAAAGAATTCGAACCCAATC CTTAACCTATGAGAAGGTACGAATTAAACTCGGAATTTAAGGTCAGTTCAATCAACCAACCGGTAGAACATGACGAAGTC TTCGGTGGGTTGGTTTCAAAATGAACCACTGTGGTTCAGTGAATTTTTTAAACGAAAAGACAAAAATGCCCATGTTTTTT TATTTTTATTTTCTCTTTTCCTTCCTTTCTTTCTGGATTCTTCCACTGCTTTATGGGTTTTTCCACTCTCCTCTGTTAAT GGAATGAGTGAGACGCTCAAATGTTCAGATCTGAGCGGGTTAGAAGCCACCGCCACCGTGCCTTCGGATCTGAACAGATC AAGCTTTTCCTCCTTTCTAATCTTAAGGGATATTGATGAAGGAAGTCGGTGGTGTTGTTGATTGTTCTTGTCGTTGGTTT TGTTTTGTTACATCATGTTATACTTTTTAGTATTGTTGGTTTATAAAACAACTTTTGAGTTACAAAAAAATTATTCTCTC TTCCTCTGATCTACACCTAGAAGCTGCAACAATACAACCAGATCTGAGAAGAGTAATATGGATTTGCATTTTAATGGTTG GAATCTAACTGTTTTGGTTTTTAATGGAAGAAAATCTTGACATTTTTTTAATTGTTCATCTAGAACTCGTTGATGGAGGT GACCTAAAAGGCTCAGATCCGGAAGTTTTGGTATATGGTCCTGTTGTGCAGCG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0473500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTTCCAATTCCAATGACAAGAAAAGTGTGTTGAGAATTCTATTCACAGCAAATGGAAGCTGTGGTTGTGGCAAAAC AAAGGCAATTGAAGTGCACGAGCCAACCAAAATACCCAAAATACCCTCCACCCATCACAAAAAGACAACAACAAACCAAA CCAGCAGCAAGGCTTCCTCCACCACCACTTCCAACGACCACAACGGCGGCGCCATCTCCATCTCCTTCGACGACGAAGAC GAAGAATTCTCCTCCGCCACCATCTCCGACACCGAAACCGCCACCACCAACAAGAGCCTCAACCACCACCACCGCCACCA CGTGGCGCCGAAACAGAGCCCTCTGCTGAACAGCGTGGCGGTGGAGAAGGACTCATCGGATCCGTATCACGATTTCCGGC ACTCGATGCTGCAGATGATCTTCGAGAAGGAGATAGATTCGGAGGAAGATCTTCAAGATCTTCTACAGTGTTTTCTCCAC CTGAATGCTGCGTGTTACCATCATGTTATTGTGAAGGCTTTCAATGAGATCTGTGAAGATGCGTTTTCCGATAAGGTTAG CACTGCTCCGGCGACGACGGAGCCTTCTCCGTCGCACAGGAACGGCCACTTCCTCAAAGGGAAGAGTGAGAGAATTGGAT AA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0473500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSNSNDKKSVLRILFTANGSCGCGKTKAIEVHEPTKIPKIPSTHHKKTTTNQTSSKASSTTTSNDHNGGAISISFDDED EEFSSATISDTETATTNKSLNHHHRHHVAPKQSPLLNSVAVEKDSSDPYHDFRHSMLQMIFEKEIDSEEDLQDLLQCFLH LNAACYHHVIVKAFNEICEDAFSDKVSTAPATTEPSPSHRNGHFLKGKSERIG

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SignalP_GRAM_POSITIVE	SignalP-TM View details on SignalP-TM Search for proteins/transripts with this domain	1	29	29	-	–
PANTHER	PTHR33057:SF99 View details on PTHR33057:SF99 Search for proteins/transripts with this domain View external data on PTHR33057:SF99	5	201	197	6.6E-76	–
PANTHER	PTHR33057 View details on PTHR33057 Search for proteins/transripts with this domain View external data on PTHR33057	5	201	197	6.6E-76	IPR038933 Show description in modal box View details on IPR038933 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	33	76	44	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	45	71	27	-	–
TIGRFAM	TIGR01568 View details on TIGR01568 Search for proteins/transripts with this domain View external data on TIGR01568	119	178	60	2.7E-21	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51754 View details on PS51754 Search for proteins/transripts with this domain View external data on PS51754	121	180	60	17.53	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04844 View details on PF04844 Search for proteins/transripts with this domain View external data on PF04844	125	180	56	2.1E-22	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	187	213	27	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0045892 View details of GO:0045892 AmiGO InterPro QuickGO	Biological process	Negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0006355 View details of GO:0010629 View details of GO:1903507 View details of GO:2000113 Negatively regulates View details of GO:0006351

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0473500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…