Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0477300 |
Transcript ID | LotjaGi3g1v0477300.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box family protein; TAIR: AT1G67190.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9ZW88|FBL34_ARATH F-box/LRR-repeat protein At1g67190; TrEMBL-Plants: tr|G7JIE1|G7JIE1_MEDTR F-box/LRR plant protein; Found in the gene: LotjaGi3g1v0477300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89369866..89373370) extracted from Lotus japonicus Gifu genome v1.2.
GTAAATATGAGAACAATAATAATTAATGCATAAATATTGTAAAGGGTGTATATGATGAAAAAAAATTGAAAAACTGACTT ATACTAATATAGAACTGAGGGATTACAATCTTAAGTCTCAACATATCCGAAAATGTGTTTCCATTCCCCAAAACAAACGC CCCCTTAGAGGTAAAGCCAATTAGCCAAAACGCGCGTTTGCGTTGTTGGTTTGATACTTGTTGGGGTTTCACATTCCCAG AAAGTGATTCTGTTCACATGTGATTCTCTTGAATCACTTCACTTCGGATCTCTCTCCTCTTTTCATCTCAATCAAACAAA CAAACAAACATCCTCGTCCTTCATTCATTCCTTCTCTTTCGATTATCCAGGTAACCAATCTTTCTTCCCAATCTCGTACA TGCCATTCGTAGGTTACCATTTTCCAATCAATTATCATTCTTGTTATTATTAATTTTTAATTAATTCTCTGATCCTTAAT TTTGATTAACCTATTCCCATTTTTAATCAAATTCATCCACTGAGTAGACAAATTGATGGAACAAGAATCTTAGGTATTTG AATTTCGTTGTTGATTGTTGAATGTTGATGAATACTGTACTTGTGTGGCTAGGGTTTCCAGATTGTAACACCATGGACCA GCTTCCTGTTGAAGTGATTGGGAACATACTGTCCCACCTGAGCGCTGCGCGAGACGTGGTCGTAGCCTCTGCAACATGCA GGAAATGGCGCCTGGCGTGCTGCAAGCACCTCAACACGCTCTCCTTCAGCTCGGTTGATTGGCCTGTTTACCGCGATTTG ACGACGACCCGCCTCGAGATTTTGATCACAGAGACCATTTTTCAGACCTCAGGGTTGCAGTCCCTCTCCATTTTGATGGA TGATGTGGATGCATTCTCGGCTTCAACTGTTATTGCTTGGCTCATGTACACCAGGGAGTCTCTGAGGCAATTGTTCTATA ATGTGAGGACCACGCCTAATGTTAACATTCTCGAAATATGTGGCAGGCACAAGCTGGAAATACTTGATCTGGCTCATAAT ACTATTACGGGGGTTGAGCCTATTTATCAGAGGTTCCCTTGTTTGAAATCTCTTTCATTGAGTTATGTCTGTATATCTGC TTTGGATCTTAATCTTTTGTTGTCTGCATGTCCCAAGATTGAAGCTTTGGAACTTGTCAATCCAGAGATTGCAATGTCCG ATGCTATGGCAACTATTGAACTGAGTAGCTCGACGCTGAAGAGTGTGTATTTTGAAGCAATCAGTATGGACAAGATTATA TTGGAGGCTGATGGGATTGAGAGCTTGCACTTGAAAGATTGCGCACTTGAGATTTTCGAACTCATTAGCAAGGGGACCTT GAAGCATTTTAGGATTGACGATGTTAGTGTTATACATCTTGATATTGGTGACACAGTTGAGAATCTTGAGAGTGTGGATA TCAGCAACTTCACAATGATATGGCCAAAATTTTACCAGATGATTTCGAGGTCATCAAACTTGAAGAAGTTCAGGCTTTGG GATGTGATGTTTGACGACGAGGATGAGGTTGTAGATTTAGAAACAATTGCCAGTTGCTTTCCACACCTGAACCATTTATC TCTGAGTTATGATGTGAGATACGGAGTGGTTCACTATGGTTTACTAGGCGCTGCCTATCTGGAAAATGTTGTTATCTTGG AGCTTGGGTGGAATGTGCTCAATGATCTTTTCTCCCACTGGGTTGAGGGGCTGCTTAAGCGATGCCCCAATCTCAAGAAG TTGGTCATTCATGGGGAGGTTTCCGAGGCCAAGTCTGATGAAGAATGCAAAATATTTGCGAATTTCACCAGGTCCATGAT TCAGCTGATGAGAAGATACACACATGTAGATCCACATTTTAATTTTGAATAGAATTCTTCTAAATGCCTTGTTAAGTCCG ATTGTTTTAGCAGTATGCACATTTGCAGGTAACTTACAGAATTCAAGAGTTTAAACACAACTTTTTACTTATTGGTTCGA GTCTTTATTTAAAATTTGCGTGATTGACCGACAATGATAGATCATAAGCATAGCAGATATTCAGGACTTCGATACCTGGT TGCAAGCAGAAAAGTCATCAACTAATCTGAAAATATTATGTTTTCAGATGTGTTCTGGAATCTTAATGTTAGAATTAAGA CCAATAAATAAATACCACTGCAACGGGGAAGATAGTTGTTACATGAATGGTAGCATTCAAGAGGCTTTCAAGGGTATATT GTTAGAAATATTTTTCTCAGGAGTTTCATGTTTTTTTGTTTCTCTTCTATTTTAAGATGTGAATTGATCAAATTGTGCCT GTTTTGATGACCCACAAGGCACAAACTTACTTTTGGCTTCTCATTATATATTGGCACTCCATTAAGACAAACTTAGACGT AGCCTTGCTTGGACCTGTTCATCTCACATTTTACCGTTTCTCTTTCTCTCTCTCTCTCTCTCTTTGGGGAGAGGGGGGGC GGATTTGTTCCTGACTCTTTGAGAAGTGAAAATTTACTCTTTCTATTCATTGGCCATGTTATGGCTGTATTTCCTTCTCT TGTGTGCTTTGTGCATTTCTCTGCAGCATCATTGACAGTTATGTTGTTAGGAATCCAATTGCAAGGTATGAGACTTGAGT CCCACATTGGAAGTGTGAGATTCTAATGTGGGGTTTATAAGGCCTTTGGCTCTCCATTCTCCAACTACAACTGCTACCTT TTGTGGTGTGGTTCTCCTAAGGTTCTTATCATATGCGTTGGTGTGTGCTGTATTACCATGATTTCCGCTTCCAAGTGCAT GGAGAGATCTGGATACTCTCCTTGCACCTTTTAGTGTTTATGCTCTTGGTTTTCCATTTTTTTGTGGTTGTTGATTTGTT TATTTGGACTTGTCCGCACTTTCTACGATAGTGGCTACAGTCATTCATACCTTGAAAAGCTTGTTAGAGTCGATGTTTGG CATGTTTTACACTGACTAATGGGTTGTTTAACTCTTTACTGAGATGAATTATGGTTATTTTATGTAAAAATATCTTTCAA TTTACGTGGCCAGCTACATGATGGTTGCTCCTGAGCCAACTTGCACTATAAATACCTGTTTGGCTGTTTCAGTATACTAC TGTCTAGAGGAACACAAAACATGTTATGGTGTAGATTTTCAAAGTAGCATTACTCTTTTTCAAATACCCCTGGATTAAAA TATCAAAAAGCTACTGCATTGATTATACAGTAACAACTTGAATCCGAAGGTCATGCAGCTTCTGGAGAATAGCATTGGAA GTGTTGTATGTTATTTTATCAGTAAGGATGATCTTGAAGTTTGCTCGTGTTAATTGAAAGAAAGTCCATTTTAGATATCT TAATGGTGCAAACTCCACGACAGCTTGATGCATTTCCTTTTATGAAACTAAGCTTGGTGAAAGTTTGAACAAAGGTAGTT GTCAAGACAAAAGTCTTCAATCAATGGACTGAAGATTTGCATATTATCAATGTACATATTACTAC
CDS sequence (LotjaGi3g1v0477300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCAGCTTCCTGTTGAAGTGATTGGGAACATACTGTCCCACCTGAGCGCTGCGCGAGACGTGGTCGTAGCCTCTGC AACATGCAGGAAATGGCGCCTGGCGTGCTGCAAGCACCTCAACACGCTCTCCTTCAGCTCGGTTGATTGGCCTGTTTACC GCGATTTGACGACGACCCGCCTCGAGATTTTGATCACAGAGACCATTTTTCAGACCTCAGGGTTGCAGTCCCTCTCCATT TTGATGGATGATGTGGATGCATTCTCGGCTTCAACTGTTATTGCTTGGCTCATGTACACCAGGGAGTCTCTGAGGCAATT GTTCTATAATGTGAGGACCACGCCTAATGTTAACATTCTCGAAATATGTGGCAGGCACAAGCTGGAAATACTTGATCTGG CTCATAATACTATTACGGGGGTTGAGCCTATTTATCAGAGGTTCCCTTGTTTGAAATCTCTTTCATTGAGTTATGTCTGT ATATCTGCTTTGGATCTTAATCTTTTGTTGTCTGCATGTCCCAAGATTGAAGCTTTGGAACTTGTCAATCCAGAGATTGC AATGTCCGATGCTATGGCAACTATTGAACTGAGTAGCTCGACGCTGAAGAGTGTGTATTTTGAAGCAATCAGTATGGACA AGATTATATTGGAGGCTGATGGGATTGAGAGCTTGCACTTGAAAGATTGCGCACTTGAGATTTTCGAACTCATTAGCAAG GGGACCTTGAAGCATTTTAGGATTGACGATGTTAGTGTTATACATCTTGATATTGGTGACACAGTTGAGAATCTTGAGAG TGTGGATATCAGCAACTTCACAATGATATGGCCAAAATTTTACCAGATGATTTCGAGGTCATCAAACTTGAAGAAGTTCA GGCTTTGGGATGTGATGTTTGACGACGAGGATGAGGTTGTAGATTTAGAAACAATTGCCAGTTGCTTTCCACACCTGAAC CATTTATCTCTGAGTTATGATGTGAGATACGGAGTGGTTCACTATGGTTTACTAGGCGCTGCCTATCTGGAAAATGTTGT TATCTTGGAGCTTGGGTGGAATGTGCTCAATGATCTTTTCTCCCACTGGGTTGAGGGGCTGCTTAAGCGATGCCCCAATC TCAAGAAGTTGGTCATTCATGGGGAGGTTTCCGAGGCCAAGTCTGATGAAGAATGCAAAATATTTGCGAATTTCACCAGG TCCATGATTCAGCTGATGAGAAGATACACACATGTAGATCCACATTTTAATTTTGAATAG
Protein sequence (LotjaGi3g1v0477300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQLPVEVIGNILSHLSAARDVVVASATCRKWRLACCKHLNTLSFSSVDWPVYRDLTTTRLEILITETIFQTSGLQSLSI LMDDVDAFSASTVIAWLMYTRESLRQLFYNVRTTPNVNILEICGRHKLEILDLAHNTITGVEPIYQRFPCLKSLSLSYVC ISALDLNLLLSACPKIEALELVNPEIAMSDAMATIELSSSTLKSVYFEAISMDKIILEADGIESLHLKDCALEIFELISK GTLKHFRIDDVSVIHLDIGDTVENLESVDISNFTMIWPKFYQMISRSSNLKKFRLWDVMFDDEDEVVDLETIASCFPHLN HLSLSYDVRYGVVHYGLLGAAYLENVVILELGWNVLNDLFSHWVEGLLKRCPNLKKLVIHGEVSEAKSDEECKIFANFTR SMIQLMRRYTHVDPHFNFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 43 | 43 | 4.8E-7 | – | |
SUPERFAMILY | 1 | 51 | 51 | 8.5E-9 | ||
Pfam | 2 | 38 | 37 | 5.0E-7 | ||
PANTHER | 3 | 419 | 417 | 6.1E-187 | – | |
PANTHER | 3 | 419 | 417 | 6.1E-187 | – | |
SMART | 4 | 45 | 42 | 7.5E-5 | ||
SUPERFAMILY | 70 | 381 | 312 | 6.28E-19 | – | |
Gene3D | 98 | 200 | 103 | 3.6E-9 | ||
Gene3D | 231 | 400 | 170 | 4.2E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0477300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…