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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0477300 |
| Transcript ID | LotjaGi3g1v0477300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT1G67190.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9ZW88|FBL34_ARATH F-box/LRR-repeat protein At1g67190; TrEMBL-Plants: tr|G7JIE1|G7JIE1_MEDTR F-box/LRR plant protein; Found in the gene: LotjaGi3g1v0477300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89370495..89371757) extracted from Lotus japonicus Gifu genome v1.2.
ACCATGGACCAGCTTCCTGTTGAAGTGATTGGGAACATACTGTCCCACCTGAGCGCTGCGCGAGACGTGGTCGTAGCCTC TGCAACATGCAGGAAATGGCGCCTGGCGTGCTGCAAGCACCTCAACACGCTCTCCTTCAGCTCGGTTGATTGGCCTGTTT ACCGCGATTTGACGACGACCCGCCTCGAGATTTTGATCACAGAGACCATTTTTCAGACCTCAGGGTTGCAGTCCCTCTCC ATTTTGATGGATGATGTGGATGCATTCTCGGCTTCAACTGTTATTGCTTGGCTCATGTACACCAGGGAGTCTCTGAGGCA ATTGTTCTATAATGTGAGGACCACGCCTAATGTTAACATTCTCGAAATATGTGGCAGGCACAAGCTGGAAATACTTGATC TGGCTCATAATACTATTACGGGGGTTGAGCCTATTTATCAGAGGTTCCCTTGTTTGAAATCTCTTTCATTGAGTTATGTC TGTATATCTGCTTTGGATCTTAATCTTTTGTTGTCTGCATGTCCCAAGATTGAAGCTTTGGAACTTGTCAATCCAGAGAT TGCAATGTCCGATGCTATGGCAACTATTGAACTGAGTAGCTCGACGCTGAAGAGTGTGTATTTTGAAGCAATCAGTATGG ACAAGATTATATTGGAGGCTGATGGGATTGAGAGCTTGCACTTGAAAGATTGCGCACTTGAGATTTTCGAACTCATTAGC AAGGGGACCTTGAAGCATTTTAGGATTGACGATGTTAGTGTTATACATCTTGATATTGGTGACACAGTTGAGAATCTTGA GAGTGTGGATATCAGCAACTTCACAATGATATGGCCAAAATTTTACCAGATGATTTCGAGGTCATCAAACTTGAAGAAGT TCAGGCTTTGGGATGTGATGTTTGACGACGAGGATGAGGTTGTAGATTTAGAAACAATTGCCAGTTGCTTTCCACACCTG AACCATTTATCTCTGAGTTATGATGTGAGATACGGAGTGGTTCACTATGGTTTACTAGGCGCTGCCTATCTGGAAAATGT TGTTATCTTGGAGCTTGGGTGGAATGTGCTCAATGATCTTTTCTCCCACTGGGTTGAGGGGCTGCTTAAGCGATGCCCCA ATCTCAAGAAGTTGGTCATTCATGGGGAGGTTTCCGAGGCCAAGTCTGATGAAGAATGCAAAATATTTGCGAATTTCACC AGGTCCATGATTCAGCTGATGAGAAGATACACACATGTAGATCCACATTTTAATTTTGAATAG
CDS sequence (LotjaGi3g1v0477300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCAGCTTCCTGTTGAAGTGATTGGGAACATACTGTCCCACCTGAGCGCTGCGCGAGACGTGGTCGTAGCCTCTGC AACATGCAGGAAATGGCGCCTGGCGTGCTGCAAGCACCTCAACACGCTCTCCTTCAGCTCGGTTGATTGGCCTGTTTACC GCGATTTGACGACGACCCGCCTCGAGATTTTGATCACAGAGACCATTTTTCAGACCTCAGGGTTGCAGTCCCTCTCCATT TTGATGGATGATGTGGATGCATTCTCGGCTTCAACTGTTATTGCTTGGCTCATGTACACCAGGGAGTCTCTGAGGCAATT GTTCTATAATGTGAGGACCACGCCTAATGTTAACATTCTCGAAATATGTGGCAGGCACAAGCTGGAAATACTTGATCTGG CTCATAATACTATTACGGGGGTTGAGCCTATTTATCAGAGGTTCCCTTGTTTGAAATCTCTTTCATTGAGTTATGTCTGT ATATCTGCTTTGGATCTTAATCTTTTGTTGTCTGCATGTCCCAAGATTGAAGCTTTGGAACTTGTCAATCCAGAGATTGC AATGTCCGATGCTATGGCAACTATTGAACTGAGTAGCTCGACGCTGAAGAGTGTGTATTTTGAAGCAATCAGTATGGACA AGATTATATTGGAGGCTGATGGGATTGAGAGCTTGCACTTGAAAGATTGCGCACTTGAGATTTTCGAACTCATTAGCAAG GGGACCTTGAAGCATTTTAGGATTGACGATGTTAGTGTTATACATCTTGATATTGGTGACACAGTTGAGAATCTTGAGAG TGTGGATATCAGCAACTTCACAATGATATGGCCAAAATTTTACCAGATGATTTCGAGGTCATCAAACTTGAAGAAGTTCA GGCTTTGGGATGTGATGTTTGACGACGAGGATGAGGTTGTAGATTTAGAAACAATTGCCAGTTGCTTTCCACACCTGAAC CATTTATCTCTGAGTTATGATGTGAGATACGGAGTGGTTCACTATGGTTTACTAGGCGCTGCCTATCTGGAAAATGTTGT TATCTTGGAGCTTGGGTGGAATGTGCTCAATGATCTTTTCTCCCACTGGGTTGAGGGGCTGCTTAAGCGATGCCCCAATC TCAAGAAGTTGGTCATTCATGGGGAGGTTTCCGAGGCCAAGTCTGATGAAGAATGCAAAATATTTGCGAATTTCACCAGG TCCATGATTCAGCTGATGAGAAGATACACACATGTAGATCCACATTTTAATTTTGAATAG
Protein sequence (LotjaGi3g1v0477300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQLPVEVIGNILSHLSAARDVVVASATCRKWRLACCKHLNTLSFSSVDWPVYRDLTTTRLEILITETIFQTSGLQSLSI LMDDVDAFSASTVIAWLMYTRESLRQLFYNVRTTPNVNILEICGRHKLEILDLAHNTITGVEPIYQRFPCLKSLSLSYVC ISALDLNLLLSACPKIEALELVNPEIAMSDAMATIELSSSTLKSVYFEAISMDKIILEADGIESLHLKDCALEIFELISK GTLKHFRIDDVSVIHLDIGDTVENLESVDISNFTMIWPKFYQMISRSSNLKKFRLWDVMFDDEDEVVDLETIASCFPHLN HLSLSYDVRYGVVHYGLLGAAYLENVVILELGWNVLNDLFSHWVEGLLKRCPNLKKLVIHGEVSEAKSDEECKIFANFTR SMIQLMRRYTHVDPHFNFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 43 | 43 | 4.8E-7 | – | |
| SUPERFAMILY | 1 | 51 | 51 | 8.5E-9 | ||
| Pfam | 2 | 38 | 37 | 5.0E-7 | ||
| PANTHER | 3 | 419 | 417 | 6.1E-187 | – | |
| PANTHER | 3 | 419 | 417 | 6.1E-187 | – | |
| SMART | 4 | 45 | 42 | 7.5E-5 | ||
| SUPERFAMILY | 70 | 381 | 312 | 6.28E-19 | – | |
| Gene3D | 98 | 200 | 103 | 3.6E-9 | ||
| Gene3D | 231 | 400 | 170 | 4.2E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0477300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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