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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0481200 |
| Transcript ID | LotjaGi3g1v0481200.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid transporter, putative; TAIR: AT1G08230.2 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|F4HW02|GAT1_ARATH GABA transporter 1; TrEMBL-Plants: tr|A0A1J7H6M0|A0A1J7H6M0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89879993..89882274) extracted from Lotus japonicus Gifu genome v1.2.
TTAGGTACAGATTGAAATAAAGGATGTTATTTTATTAGCAATAAGGATGTTTTTTTAATAAGCAATAATGGATGTTAAGA TGTAATTTATATTATGTGTGGCTTGTAGGGTCATGGGTGCATTCTGCTTACCACTTAACAACATCAATTGTGGCTCCACC TCTATTGAGTCTTCCTTATGCATTCACCTTTCTTGGATGGACGGCTGGGATCTTGTGCTTAGTTATTGGAGCTCTTGTCA CCTTCTACTCCTACAATTTAATATCTCTTGTTCTTGAGCACCATGCTAAGTTGGGTAATCGTCAGCTCCGATACAGAGAC ATGGCTCATGATATTCTAGGTACCACATACTTAGCTTTATAATATTCATATATCACATTTTGCAAATCAACATGCTAAAA TCTTACTTCGATTTGTGGATATTTGTCATATATCAATGAAATACCAAATGAACAATTCAATTTGGTTTCTCAACAGTAAA CTAAAGTTAATTACAACAGATAAAAACAAATTCTCTTAACTTTTATGGCTGTTTAGTGTCCAGTGTTATTTTAACATCAC CCTTGTTTTTCACCCAAATACTTTTTACCTTACAGCTAATGTAAATGAAACATTGGCAGGTCCAAGATGGGGTCGTTATG TTGTGGGGCCGATTCAGTACACAGTCTGCTATGGTGTTGTAGTGGCGTCTACTCTTTTAGGAGGACAATGCATGAAGGTA AAATCTTTTTTATATCACAAATAATTGAAACAGAGAGACATATTTGACTTCCATTGTGTTCTTACCCTTTTTTCTTCCAA TGGAATTAAATGCAGGCAATTTACATTTTAGCAAATCCAAATGGGACCATGAAGCTTTACGAGTTTGTAACAATATTTGG ATTTTTCATGTTGATTTTGGCTCAAGTCCCATCTTTCCACTCATTGAGGCACATCAATCTTGTGTCTTTGGTTCTGTGCT TGGCCTACAGTGCTTGTGTTACTGTTGGTTCCGTATATATTGGTATTTGCTTAATTTCCTTCTTCTTTTGTAACTCAATA ATATGATAATATGATTTGGGATTCAATGGTTTGTGTTCTAACTTCTAACCTGGACATTATCAATATCATTGCAGGAGGAG ACTCGTCAAAAGTACCAACAAAAGATTATTCTTTGAAAGGTGATGCTGAGAGTCGCTTATTTGGAATCTTTAATGCTGTT GCCATCATTGCCACAACATACGGAAATGGAATAATTCCAGAAATTCAGGTTTGAATAACTCCCTCTAATTATACTCACGT AAGAATCAAACCATATGTTATAAAACTCGAACTTGTTATCGACTTGGTCGGGTGTTAGGTTAATGAGTCACTGATTCAAT CATTGAGTCGGGGTTGACTATTCCTTTCATGACTAAAGAGCAAGTGCTTATTTATAAATTTATTATATGGACTAGACTAA CATAAAATTGAAAGATGCTCTTATATAACTAAATATCAAGTGGTCTAGTAGTTGTGACTCTTCCTTTGAATGTGTTTAAC TTATTCTCTAGCTTTTTTATTTTCTTTTGCAGGCTACATTAGCACCACCAGTAAAAGGGAAGATGTTCAAGGGACTAAGT GTTTGTTACACTATACTTACAATCACTTTCTTCAGCGTAGCTATATCTGGTTATTGGGCATTTGGCAATGAATCTGAAGG CCTAATCCTAAGCAACTTTGTAGACAATGGGAAGCCTCTAGTGTCCAAGTGGTTCATTTACATGACCAACATTTTCACTA TAACACAATTATCAACAGTTGGCGCGGTGAGTAACGTGTTGAAGAGTTTATAACAATTGATTGACTATAGAGGCTGCAGA AAATCTGAATTCATCCCTCGTATTCAACTAAGTAACCATTGGATTTCCACATTAAATGCAGGTATACTTGCAACCTATAA ATGAAGTGCTGGAGCAAACATTTGGTGACCCGAAAAGCCGTGAGTTCTCGTCCCGCAATGTAATCCCTAGAGTGATTTCG CGGTCCACTGCTGTTGTTGTTGCAACTACTATAGCAGCCATGCTGCCATTTTTCGGGGACATAAATTCGCTTATTGGAGC TTTTGGATTTATGCCACTTGACTTCATTTTGCCAGTGGTTTTCTACAATTTGACTTTTAAGCCATCGAAGAGAAGCCCCA TTTTCTGGTTGAATGTAACTATTGTTGTGGTTTTCTCTGCATTAGGAGGTATTGCAGCAGTAGCAGCAGTTAGACAGATA GTACTTGATGCCAAAAGCTATCGATTATTTGCTAATGTATGA
CDS sequence (LotjaGi3g1v0481200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAAGATGTAATTTATATTATGTGTGGCTTGTAGGGTCATGGGTGCATTCTGCTTACCACTTAACAACATCAATTGT GGCTCCACCTCTATTGAGTCTTCCTTATGCATTCACCTTTCTTGGATGGACGGCTGGGATCTTGTGCTTAGTTATTGGAG CTCTTGTCACCTTCTACTCCTACAATTTAATATCTCTTGTTCTTGAGCACCATGCTAAGTTGGGTAATCGTCAGCTCCGA TACAGAGACATGGCTCATGATATTCTAGGTCCAAGATGGGGTCGTTATGTTGTGGGGCCGATTCAGTACACAGTCTGCTA TGGTGTTGTAGTGGCGTCTACTCTTTTAGGAGGACAATGCATGAAGGCAATTTACATTTTAGCAAATCCAAATGGGACCA TGAAGCTTTACGAGTTTGTAACAATATTTGGATTTTTCATGTTGATTTTGGCTCAAGTCCCATCTTTCCACTCATTGAGG CACATCAATCTTGTGTCTTTGGTTCTGTGCTTGGCCTACAGTGCTTGTGTTACTGTTGGTTCCGTATATATTGGAGACTC GTCAAAAGTACCAACAAAAGATTATTCTTTGAAAGGTGATGCTGAGAGTCGCTTATTTGGAATCTTTAATGCTGTTGCCA TCATTGCCACAACATACGGAAATGGAATAATTCCAGAAATTCAGGCTACATTAGCACCACCAGTAAAAGGGAAGATGTTC AAGGGACTAAGTGTTTGTTACACTATACTTACAATCACTTTCTTCAGCGTAGCTATATCTGGTTATTGGGCATTTGGCAA TGAATCTGAAGGCCTAATCCTAAGCAACTTTGTAGACAATGGGAAGCCTCTAGTGTCCAAGTGGTTCATTTACATGACCA ACATTTTCACTATAACACAATTATCAACAGTTGGCGCGGTATACTTGCAACCTATAAATGAAGTGCTGGAGCAAACATTT GGTGACCCGAAAAGCCGTGAGTTCTCGTCCCGCAATGTAATCCCTAGAGTGATTTCGCGGTCCACTGCTGTTGTTGTTGC AACTACTATAGCAGCCATGCTGCCATTTTTCGGGGACATAAATTCGCTTATTGGAGCTTTTGGATTTATGCCACTTGACT TCATTTTGCCAGTGGTTTTCTACAATTTGACTTTTAAGCCATCGAAGAGAAGCCCCATTTTCTGGTTGAATGTAACTATT GTTGTGGTTTTCTCTGCATTAGGAGGTATTGCAGCAGTAGCAGCAGTTAGACAGATAGTACTTGATGCCAAAAGCTATCG ATTATTTGCTAATGTATGA
Protein sequence (LotjaGi3g1v0481200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRCNLYYVWLVGSWVHSAYHLTTSIVAPPLLSLPYAFTFLGWTAGILCLVIGALVTFYSYNLISLVLEHHAKLGNRQLR YRDMAHDILGPRWGRYVVGPIQYTVCYGVVVASTLLGGQCMKAIYILANPNGTMKLYEFVTIFGFFMLILAQVPSFHSLR HINLVSLVLCLAYSACVTVGSVYIGDSSKVPTKDYSLKGDAESRLFGIFNAVAIIATTYGNGIIPEIQATLAPPVKGKMF KGLSVCYTILTITFFSVAISGYWAFGNESEGLILSNFVDNGKPLVSKWFIYMTNIFTITQLSTVGAVYLQPINEVLEQTF GDPKSREFSSRNVIPRVISRSTAVVVATTIAAMLPFFGDINSLIGAFGFMPLDFILPVVFYNLTFKPSKRSPIFWLNVTI VVVFSALGGIAAVAAVRQIVLDAKSYRLFANV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 7 | 28 | 22 | - | – | |
| PANTHER | 11 | 427 | 417 | 1.6E-213 | – | |
| PANTHER | 11 | 427 | 417 | 1.6E-213 | – | |
| Pfam | 13 | 415 | 403 | 1.4E-65 | ||
| Phobius | 29 | 39 | 11 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 40 | 64 | 25 | - | – | |
| Phobius | 65 | 104 | 40 | - | – | |
| Phobius | 105 | 128 | 24 | - | – | |
| TMHMM | 105 | 127 | 23 | - | – | |
| Phobius | 129 | 133 | 5 | - | – | |
| Phobius | 134 | 153 | 20 | - | – | |
| TMHMM | 137 | 156 | 20 | - | – | |
| Phobius | 154 | 164 | 11 | - | – | |
| TMHMM | 163 | 185 | 23 | - | – | |
| Phobius | 165 | 185 | 21 | - | – | |
| Phobius | 186 | 204 | 19 | - | – | |
| Phobius | 205 | 224 | 20 | - | – | |
| TMHMM | 205 | 224 | 20 | - | – | |
| Phobius | 225 | 244 | 20 | - | – | |
| TMHMM | 243 | 265 | 23 | - | – | |
| Phobius | 245 | 265 | 21 | - | – | |
| Phobius | 266 | 287 | 22 | - | – | |
| Phobius | 288 | 309 | 22 | - | – | |
| TMHMM | 288 | 310 | 23 | - | – | |
| Phobius | 310 | 336 | 27 | - | – | |
| TMHMM | 336 | 358 | 23 | - | – | |
| Phobius | 337 | 357 | 21 | - | – | |
| Phobius | 358 | 362 | 5 | - | – | |
| Phobius | 363 | 381 | 19 | - | – | |
| TMHMM | 363 | 385 | 23 | - | – | |
| Phobius | 382 | 392 | 11 | - | – | |
| Phobius | 393 | 416 | 24 | - | – | |
| TMHMM | 394 | 416 | 23 | - | – | |
| Phobius | 417 | 432 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0481200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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