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LotjaGi3g1v0481500.1

Overview

Field Value
Gene ID LotjaGi3g1v0481500
Transcript ID LotjaGi3g1v0481500.1
Lotus japonicus genome version Gifu v1.2
Description Bifunctional polymyxin resistance protein ArnA; TAIR: AT1G08200.1 UDP-D-apiose/UDP-D-xylose synthase 2; Swiss-Prot: sp|Q9SGE0|AXS2_ARATH UDP-D-apiose/UDP-D-xylose synthase 2; TrEMBL-Plants: tr|A0A1J7GZT2|A0A1J7GZT2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:89923132..89926974) extracted from Lotus japonicus Gifu genome v1.2.

CCACGTGAAAAAGAAAGTTGAGATTTGCAATCTTGTGACAAAACAAAACCATTTTATCATCATCATCATTATTATTTCAT TATATAAATATAAACGAGTGTCTTGTTCTTGCATCATCCATCACTCTCTCTTCCCAATCAATAATTAGCCTCCACCGTCA TCTTCATTCATTCCCAACAATGGCTTCATCACGCGTGGATCTCGACGGCAACCCCATCGCGCCGCTCACAATCTGCATGA TCGGCGCCGGCGGCTTCATCGGCTCCCACCTCTGCGAGAAGCTCATGTCCGAAACCCCTCACAAGGTTCTCGCCTTGGAT GTCTACAGCGACAAGATCAAGCACCTCTTGGAACCCGACAACCTCCCTTGGCATGGCCGCATCCACTTCCACCGCCTCAA CATCAAACACGATTCCAGGCTCGAGGGTCTCATCAAAATGGCAGATCTGGTAACCCCAGATCATCAAAATCAATTCTTTT TTCTGGGTTTCTTTGTATTCGCATTTCGGTCCTTAAACTTTAATCAATCTTTGTTTTCAGACCATTAATCTCGCTGCTAT TTGTACACCTGCTGATTACAACACCAGACCCCTTGATACCATTTACAGTAATTTCATTGATGCTCTTCCTGTGGTATGTG TTCTTCTGAGATTTCATGTCAATCTTCTTTGTGCATGTTGTTCTTCTGTTGGGGTGCATGATTTGATTTTGATCTTCATC TTGTGTTTGCAGGTGAAGTATTGTTCTGAGAATAACAAGAGGCTTATCCATTTCTCTACTTGTGAAGTGTATGGGAAAAC GATTGGAAGCTTTCTCCCCAAAGATAGTCCTCTTCGTCAGGTACCCTTTCTTTTTCATCTTTGCTACTATTTTGATTCTT TAGCCAAAATCAATTATGGGAAGAAGCTTTTCTGTGTGTTCTTCCTTCTAGTTTCTGGTGTCAAAATTGATTATTAGATA AAATAAGTTGATCTTGGAAAGTAGCTTTTGTGTATGATAATTGATTATGAGAGAAAGAAAAAAAGCTGATCCAATCATCT TATTATTATATGTTTTCTTTGGAGGTAGTTTGTTCCAGATCCGTGCTTCATGAGTTATGTATGCTTTTGTGTTTGCATAA TTTGGAATTTGTCGGTGGTATCCTTAATCAAGCTTACAAGGTTGTGGGACCAAGCAACTAATCTTAGGTTTTGGCTATTG TTTTTTATTTTGACCAATGATTACAAAAAGGACATCTTCTTTTCAACCTGAAAGATTTGAAATATGTCGGTGATAGTCCA ATCCTACCTCTGAATTGAACTCATGAGCTCATTTGACCAAGTTGTAACAAGCAACATGGCTTAGGCTTTAGTTGGTGTGC TTTATTTTTCACTGATAATTATGAAAATGACATCTTGTTATTTGTATTTGTTTTGAAAGATTTGCATAGAAATTATTTTC CCCCCTAATGTTTTGTGGAAATTGAAATTAGAATCAGAAAACATATTATCAAACTGTGCAATTAGATTGTGAATTGTGAT TACCTTCTCATAAGATGTTGACTTGGTACATTTTTCATAAGATGTCTTGTTAGTTATAACTTATAGGAGATTGACATGCT GTGAATTGTCATAACTCATAACTTATATTCTTCTTCCTGCTCTAGGATCGAATTTTAAGTTTCCTCTCAAGGTAGTAGTA AGAAATAAAATGCTGGACTTTTTCAGTCAATTTTCATTATCTGTTTTTTCAGCTTTTGTAGTAGGAGTGCGGGTTGCTTG TCTTGTTTACTTCTTGCTATGAGCTGAACTACATTGTTTTCGATGTTTTGTTAGGATCCTGCATACTATGTTCTTAAAGA AGATGAGTCTCCTTGCATTTTTGGTTCAATCGAAAAGCAAAGGTGGTCATATGCTTGTGCTAAACAGTTGATTGAGAGGC TGATTTATGGTGAGTGAGCTGTTTTTTTTTTTCTCTTTTCCTTTGTTTTTCAATATTGACTAGTCTCACTGACATGTGAT CGTTGACAGCTGAGGGTGCTGAAAATAACATGGAGTTCACGATTGTGAGGCCATTCAATTGGATTGGACCTAGAATGGAC TTCATTCCTGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGTGTTTTGGCATGTTTTAGCAATGTTAGTTACTTCTTGCT TTAGCTTTTGTTGAAGTTTGTAGATATTTTAGACAAATTTTTAACAATTTGTATGAAATTTTCCCTCTGCAGAATCTTCT TAGAGGAGAGCCCCTCAAGCTTGTGGATGGTGGCGAATCCCAGAGAACCTTTGTTTATATCAAAGATGCTATTGAAGCTG TCTTATTGATGATTGTAGGTTCTCATATCCAATCTTTTACGTGCACTTTTTTGTATTCATCTTAAATTACTATTGTCAGT TGAGATCCACTAAATGTTATGACCTGTTAACAGGAAAATCCTGGCAGGGCTAATGGCCACATCTTTAATGTGGGTAACCC ACACAATGAGGTTACTGTCAGGCAGCTTGCTGAAATGATGATTCAGGTGAAATAGTTGTTTTTTTAAAATTATTTTGCAC GAATATTAGAATGGTAGGCATTGTTGCTTTGGGGATTCAAGAATTGTCATGATTCTACAGGTCTATTCAAAGGTAAGCGG AGAACAAGCTCCTGAAACACCTACACTTGATGTGAGCTCAAAGGAATTTTACGGTGAGGGATATGATGACAGTGACAAGA GAATTCCTGACATGACCATAATAAACAGGCAGCTCGGTAGGTTTCCTCAATCACTCATCCCATTTGCTGCATGTTTGCTT GACCCCAGAATTGCGTTTTGGCTGGCAAAAGCTACTTTTTGTATCTTTTACAATACACGATTCTCATGACAGCTGCTATT CTTATAGATCTTCAACATCACAATTCACAAGTTACTTTACATACATGTATAATGGTTGTTGCCTGTGACAGGATGGAATC CTAAGACATCACTTTGGGACCTGCTTGAATCCACCCTGACTTATCAGCACAGGACATATGCTGAAGCCGTCAAGAAAGCC ATTGCAAAACCAATTGCTAGTTAAGGCGGCTTATATGGTGATGCTGATGTGCTTCTTCCTTTGAGAAGGGTCTTCTTGCC TAGGTGTTCTCCCATTTGGGGATTTTACATATATTTTACTGTTTGACTTTCATATCCATGGTAAATTTTCCTCCTTTTGT TTATCAGTAGCTCATAGGCAATAGCCCACATTAGCTCATGCCTTGATGAGTGAGTGCTCCTGCTGAAGTAGGAATTTATC TAGGGGGGATTCTTTGCTGCCATGTAATTTCAATGTAGAGCTTTTGCAGTGCTGAACATGTTGATGAGGCATTTCAGATA AGAAATATGTTTTTGTTTTTTAGAATCTGGGTCATTACTGTTTTGTCTTTCCAGCTCAGTGTAAGTTGTAACATTCTGTA TGACCCTGTTAAGCCATGTGCTCTATATTATTTGTTATTAATTTATTGTATGAAGTTTCTTACAATTTCCCCCCTTTGTT GAGCTTTATTCCAGCACCAAGGTGTCCATCAAACTTTTTCTTGATACCTGTTTATTATAATTTGCGAGTTAGTTCCAGTT ATGCTTATGGGGACCATCACCGTCAAAGATAAAAGAAGAAAAAAAAAACATAGTAATTGTTTATCAGAGTGATTCTCACT GCATTCTTGTTTCGCTGCCATTAATTTGGTCAAACCATGTTAAGATTGGAAACTGGAGCATTCTGTTTGGTTTGAATACT GGTTGAGAATTGCCAATGTTGTTAAGAGTAGCTAAATATGTGTACCAGACATTAAAAGATGTTTGGTGGTTAAATTTAGG CAC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0481500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCATCACGCGTGGATCTCGACGGCAACCCCATCGCGCCGCTCACAATCTGCATGATCGGCGCCGGCGGCTTCAT CGGCTCCCACCTCTGCGAGAAGCTCATGTCCGAAACCCCTCACAAGGTTCTCGCCTTGGATGTCTACAGCGACAAGATCA AGCACCTCTTGGAACCCGACAACCTCCCTTGGCATGGCCGCATCCACTTCCACCGCCTCAACATCAAACACGATTCCAGG CTCGAGGGTCTCATCAAAATGGCAGATCTGACCATTAATCTCGCTGCTATTTGTACACCTGCTGATTACAACACCAGACC CCTTGATACCATTTACAGTAATTTCATTGATGCTCTTCCTGTGGTGAAGTATTGTTCTGAGAATAACAAGAGGCTTATCC ATTTCTCTACTTGTGAAGTGTATGGGAAAACGATTGGAAGCTTTCTCCCCAAAGATAGTCCTCTTCGTCAGGATCCTGCA TACTATGTTCTTAAAGAAGATGAGTCTCCTTGCATTTTTGGTTCAATCGAAAAGCAAAGGTGGTCATATGCTTGTGCTAA ACAGTTGATTGAGAGGCTGATTTATGCTGAGGGTGCTGAAAATAACATGGAGTTCACGATTGTGAGGCCATTCAATTGGA TTGGACCTAGAATGGACTTCATTCCTGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGTGTTTTGGCATGTTTTAGCAAT AATCTTCTTAGAGGAGAGCCCCTCAAGCTTGTGGATGGTGGCGAATCCCAGAGAACCTTTGTTTATATCAAAGATGCTAT TGAAGCTGTCTTATTGATGATTGAAAATCCTGGCAGGGCTAATGGCCACATCTTTAATGTGGGTAACCCACACAATGAGG TTACTGTCAGGCAGCTTGCTGAAATGATGATTCAGGTCTATTCAAAGGTAAGCGGAGAACAAGCTCCTGAAACACCTACA CTTGATGTGAGCTCAAAGGAATTTTACGGTGAGGGATATGATGACAGTGACAAGAGAATTCCTGACATGACCATAATAAA CAGGCAGCTCGGATGGAATCCTAAGACATCACTTTGGGACCTGCTTGAATCCACCCTGACTTATCAGCACAGGACATATG CTGAAGCCGTCAAGAAAGCCATTGCAAAACCAATTGCTAGTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0481500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSRVDLDGNPIAPLTICMIGAGGFIGSHLCEKLMSETPHKVLALDVYSDKIKHLLEPDNLPWHGRIHFHRLNIKHDSR LEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPA YYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENNMEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSN NLLRGEPLKLVDGGESQRTFVYIKDAIEAVLLMIENPGRANGHIFNVGNPHNEVTVRQLAEMMIQVYSKVSGEQAPETPT LDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAVKKAIAKPIAS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 11 11 - –
PANTHER
PTHR43245:SF28
10 383 374 9.2E-241 –
PANTHER
PTHR43245
10 383 374 9.2E-241 –
Phobius
TRANSMEMBRANE
12 32 21 - –
Gene3D
G3DSA:3.40.50.720
16 379 364 5.6E-104 –
CDD
cd05257
17 372 356 6.06349E-126 –
SUPERFAMILY
SSF51735
17 370 354 6.29E-62
IPR036291
Pfam
PF01370
18 288 271 1.1E-60
IPR001509
Phobius
CYTOPLASMIC_DOMAIN
33 387 355 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0050662
Molecular function Coenzyme binding Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0481500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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