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LotjaGi3g1v0485000.3

Overview

Field Value
Gene ID LotjaGi3g1v0485000
Transcript ID LotjaGi3g1v0485000.3
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Protein upstream of flc; TAIR: AT2G28150.1 UPSTREAM OF FLC protein (DUF966); Swiss-Prot: sp|Q9LX14|UFC_ARATH Protein UPSTREAM OF FLC; TrEMBL-Plants: tr|K7LTP4|K7LTP4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0485000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:90215287..90219911) extracted from Lotus japonicus Gifu genome v1.2.

GAAAACACCAACAACACAACACAAACACAAGCATATGAATGAACTCTCTCACTCTCAACCACACCAATCAACTCCAATTA TCAAATCTGCCAAAAACATCTCCATACTTCAAGCTACTCTGTACCCCTTCACCCACTCCTGTCCCTGTTTCATCCTCTCC CTCAATCACTGTCCCTGCCTCCTTCAATTGCGGACATTCACACACACACACACACACATAGATTTTTCTAACTCACTTCA TTTCTTCAAGGTATATACATTTTTCACATTTATATTGCTAATGATTCCATCTTTTTGACTTGTTAATACTACTAGCTACT TGGATCTGATTTGGGCATGTACTTAACTCAGTGATGAAAGTGGGAAATCTCCAACTCCAACCGACCCAGTAACGTTTTTT CAAGAATCAAGTTAATGAGAGAAATGGGGTTGTTTCTTATACAATTTTGAAGCTTGGGAATAGAGAAAGGTTCAATTTTT ACAGGTGGGGTTGTTTTGTTTTGCATGTGAGAATGGAAGCGCGGATGAAGAAGTATAGGCAACAAGTGAGTCCTGAGAGG GCCAAAGTGTGGACTGAGAAGTCACCTAAGTACCATCAGAGTCTGAAGGTTCCTGTGATTTACTATCTCTGTAGGAATAG GCAGCTGGAGCACCCTCATTTCATGGAGGTCCCTCTTTCTTCCCCAGATGGGCTGTACTTGAGAGGTACAAAATGGAAAC ACGTTCTTGTTTTGGGTATGTGGTTGTAGGGTTTTAAAATTTTCCTTTGTGGATTGTGGTTTTTGAGGGGTTTGTTTGTT TTTTGTGCAGATGTGATTGATAGACTAAATGCATTGAGAGGTAGAGGCATGGCTTCCTTGTATTCATGGTCTTGTAAGAG GTGAGCAAGTTTTTAACACTTTCTATGTCATTATGTCCTGTTGTTTAATTTGTGTTGAGAAAAAAGAAAGAAAGGGGGAA ATCAGGAAACTTGGTGCATGTTTGGATACACAGTAGATTTTCACCTAGGAATGAAGAATTGATTCTATAAGAAGCTAATC CTAGTTGCTTTTGTGGGAGTGCAATTAATTCTGGAAGGTTTTACGAGAATCCAAACATGCTCTTGATAGGCTTCTTCTTT GCCCCTTGTTTCCCTTTTGAATAATAGTTTAGTAATTACTGCATACAATTTTAATCATTGATATTAGTTTTTCTTGTAAT TCAGAAGCTACAAGAGTGGATTTGTGTGGCATGATCTTTCTGAAGATGATTTAATTTTACCAGCCCATGGAAATGAGTAT GTCCTCAAAGGCTCTGAGCTCTTTGATGAATCCAATTCAGGTAAAGAAGATATTTTGTTTATTCGTCTTCAAATTATAGT CATTTGGTAGGTTCTGAATGATATAGAATGCCTGTACCCTTAGCCTTTGTGGCTTTTGCTTTGCAGATAATTTCAGTCCC ATTAGCAACGTCAAAATGCAGAACGTGAAGCTGCTGCCGGGGCCAGCTTCTTCTAGAAGTCATGATGAAGCCTCTTCCTC ATCTAGCATGAATGGGAAAGAGACAAGAACCTCCCAAGAGGACGAGCTTTCTCAAGAACCGCATACGGGCTCCTCGGATG TTTCCCCGGAGTCTAGGGATGAAAAAAGCGACTCTCTGAGCTTGGCATTGACAGAGTACAAAATTTACAAGACTGATGGA TTGGCAGATGCTTCCACTCAGACAGAAGAACAAGTTAGCAGAACCAGAGCTCAGAAAACTTGTACAAGGGGTGTATCAAC AGAGGATAGATCATTAGAACCTGAATGCCATGAAATATGTCAAGCTGAAGTTCCAGAAGTGAAAGATAATCCGAAAATGT GCAAGGATACCATTTATCCTTCTCCTTCAACTTCAAGCCCCTTATCTTTTGGGAGTAAGGCTGAAACTTTGGAATCTTTG ATTAGAGCTGATGCTAGCAAACTGAGCAGCTTTAGGACCCAGGAAGAGGAGGGCGCTCGGGTGCCGCCAACCAACACGAG GCTGAAGGCCTCAAATTTGCTGATGCAACTGATCTCATGTGGCTCGATATCAGTGAAAAACCACAGTTTTGGCCTTATTC CTTCCTATAAGCATAGGTTTTCTGATTCAAAATTCCCTTCTCCGCTGTTCTCCACTTCTTTTATGTTAGGGGAATTTGAT TGCTTAGCAGAGAATCCAAAGCTGATGAATCTTAGGTTGGAAGACAAAGAATACTTTAGTGGGAGCTTAATTGAGACTAA ACTGAAGGAAGGAGAGGCACATAAAGTTCTGAAACGTTCTTCTTCCTACAATGATGAAAGGTAAGTCTTGCTTTCAAATA TTCTCTTGCAGCATTACAAATTCGCACGTGGAAGAGTTATTCATGCTGGTGTTTTCTTAATTTTGTAAGAAATGGACTAG TCATAATCAAATAGTTATTCAATGTTGAGGAAATAGTATATGGATTGCTTAAGGTCTGATGTAGCAACAGGATTGATATC TAGAATGTAGTAATTCTTTAAGTTTTGAATTGTGAATAATGCCTGATTAGGAAGAAAACCAGTGACTTGTGCAAGTGGTC TATAGGTGATAATGCTAACTGCTTGAATCTGTTCATAGAAGGCTAATTGAGTTTCTCTCAGATCTGAAAATATTTTTCCA GCTTGAGTTATATTCTCCAACATTAAATGAATGATTTCAAAAGTAACATAACATCCACTAAGCTGTGAATTGTTACAAAT CAAAGTCCACACATTGACATTTTGCAAATGCTTTCACTATTTCCCCCATATCACTTAGCATTTTTAGGTTTTTATTAAAA GAAATCACTTGAACATCTTCTGTCCCTCTGATCATGGTTAAAAAGCCTATGTTTTTGTATTTCTTTTGTCAATGGGCTGT TAAAGCTAACATAAATTCATGAAATATAAGTACTTTCACATGCTTGTTTATATGTTTATTTCTTAAAGGTTACAAAGAAT TGCTGTTTTGTGAACATAACATGCTGATTAAAAAAAAGAATACTTGAAATATCTAATATCAGACCACCTCCCTTTTCTCA ACAAAAGGAAAAGGAAAGGACAAAAAGGGGTGGAGTGATAATCTGAAAAATAATAAATAGAGGCACATATATCATGTTAT TATGAGCATCATTGCTGTTTTATTTCTTTCTTATAATATGAGCTCTTTACATGGAGGCTAATCTATATAACATGCCACTG GGGTCAATGATTAATGTGGTTGGCTTTTTGGATTCGTGATTTACAGTTTTGTCTTTGGTTATGATTGGATTCTGAATGGA ACATGATAGTTATTATTACATTACATCCTGGCCAATGTGTCATCTGTAACATAACCAATGCACAAATGTGCAGGACATAT AAAGACCAGAAACCACAAGAAGACAAAGAGGAAACATCCTCAGGACATTCAAAATGCATTCCACGATCAATCAAGGCTTC ATTGACCAAGCATCCACGAAGCGAATCCATGAAATCCCCCGTTTCTGATGGGCCAAGAAACTCATCGGACAGATTTGATG GATCAGGCATATCCTCAGTAACATCTAACGGTAGCAGCAAAAGAATCTCCGAACCTTCATCAGGGAAGAAGCAGTCAAAG AGGATAGATTCGTTTAGGGAAGAAGAGGTGATCAAAATAGAAGAAAGTTAAGTATTGACTCTATCTTTTCCCTTCTAAGA TTCTTAAATTTAGAGAAGTGATTTTAGTGTTAATATTAATATTAACTTTGTTCGTATTTAGTCCCTAAAAAATATAAAAA TTAAGTGCTTTTAGTTCCTGATCGCATGATTTATGTACTTTTAAGGACTAAAAGTGAGTAAATTTTTTGTAGGACTAACA ATCAAGAATGATTGGTTTAGTTACACTTTTGGTCCCTATAATTTTGGGAATGTCCCTATAGTTTCAATTGCTCGAATTAA GTTCCTCTAGTTTCAAAATTGAGCAATTTTGGTCCAAATATTGATTTGTCATCCAATACCTAACGCAAACTTTTGACATA TATGACAATTTTTTTAAGTGTAAATTATTGGGGCCAAAATCACAAATTCCTGAAACTATAGGGATCAAAAATGTATTTAG CCAAACATATTTTACCCTTCAATTATTACTATATTCATACAGCTTTTAGCAATCTAGACTGATAGATTTGATTTCTTCAC AACAGGCTTGCTTCAGGAGCTCGGGTTATAATCCAATCATCCAAACCATTTTGTGACACAGCATCTAGCAGCCCTTGAAA AAAGTTTCAGAGTTTAGAGAACAACAAAATTGCTGGTGTTTTTAGCTTTAGTTTGAATTCATCATTATTGTATATAAGTT GGTAGGTGCATGCGACATTTCCATAAGGCTATAAAGTGAAAATATTTTGAGAATGACTCATTGCAAAGAGAAGTAGCTAA TAGTGCAGGTGTGGTCCCAACATGGTGCTGGATAGAGAGGGACTTTGTCTTTTATAACTACAAATACAATATCTTCCTTT TGCTTCCTTCCTTGTGTTTTTTCCCTTATAAGGACAAATGGTGCAAGTGCTTGTCGTTTTCAGAACCATTCCTTGGCATT GGTGCTGGTGTTGTCAAATGGTAAGCATGTGACATTGAATGTGACATTGGATGCGTTTGTGGTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0485000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGCGCGGATGAAGAAGTATAGGCAACAAGTGAGTCCTGAGAGGGCCAAAGTGTGGACTGAGAAGTCACCTAAGTA CCATCAGAGTCTGAAGGTTCCTGTGATTTACTATCTCTGTAGGAATAGGCAGCTGGAGCACCCTCATTTCATGGAGGTCC CTCTTTCTTCCCCAGATGGGCTGTACTTGAGAGATGTGATTGATAGACTAAATGCATTGAGAGGTAGAGGCATGGCTTCC TTGTATTCATGGTCTTGTAAGAGAAGCTACAAGAGTGGATTTGTGTGGCATGATCTTTCTGAAGATGATTTAATTTTACC AGCCCATGGAAATGAGTATGTCCTCAAAGGCTCTGAGCTCTTTGATGAATCCAATTCAGATAATTTCAGTCCCATTAGCA ACGTCAAAATGCAGAACGTGAAGCTGCTGCCGGGGCCAGCTTCTTCTAGAAGTCATGATGAAGCCTCTTCCTCATCTAGC ATGAATGGGAAAGAGACAAGAACCTCCCAAGAGGACGAGCTTTCTCAAGAACCGCATACGGGCTCCTCGGATGTTTCCCC GGAGTCTAGGGATGAAAAAAGCGACTCTCTGAGCTTGGCATTGACAGAGTACAAAATTTACAAGACTGATGGATTGGCAG ATGCTTCCACTCAGACAGAAGAACAAGTTAGCAGAACCAGAGCTCAGAAAACTTGTACAAGGGGTGTATCAACAGAGGAT AGATCATTAGAACCTGAATGCCATGAAATATGTCAAGCTGAAGTTCCAGAAGTGAAAGATAATCCGAAAATGTGCAAGGA TACCATTTATCCTTCTCCTTCAACTTCAAGCCCCTTATCTTTTGGGAGTAAGGCTGAAACTTTGGAATCTTTGATTAGAG CTGATGCTAGCAAACTGAGCAGCTTTAGGACCCAGGAAGAGGAGGGCGCTCGGGTGCCGCCAACCAACACGAGGCTGAAG GCCTCAAATTTGCTGATGCAACTGATCTCATGTGGCTCGATATCAGTGAAAAACCACAGTTTTGGCCTTATTCCTTCCTA TAAGCATAGGTTTTCTGATTCAAAATTCCCTTCTCCGCTGTTCTCCACTTCTTTTATGTTAGGGGAATTTGATTGCTTAG CAGAGAATCCAAAGCTGATGAATCTTAGGTTGGAAGACAAAGAATACTTTAGTGGGAGCTTAATTGAGACTAAACTGAAG GAAGGAGAGGCACATAAAGTTCTGAAACGTTCTTCTTCCTACAATGATGAAAGGACATATAAAGACCAGAAACCACAAGA AGACAAAGAGGAAACATCCTCAGGACATTCAAAATGCATTCCACGATCAATCAAGGCTTCATTGACCAAGCATCCACGAA GCGAATCCATGAAATCCCCCGTTTCTGATGGGCCAAGAAACTCATCGGACAGATTTGATGGATCAGGCATATCCTCAGTA ACATCTAACGGTAGCAGCAAAAGAATCTCCGAACCTTCATCAGGGAAGAAGCAGTCAAAGAGGATAGATTCGTTTAGGGA AGAAGAGGTGATCAAAATAGAAGAAAGCTTGCTTCAGGAGCTCGGGTTATAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0485000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEARMKKYRQQVSPERAKVWTEKSPKYHQSLKVPVIYYLCRNRQLEHPHFMEVPLSSPDGLYLRDVIDRLNALRGRGMAS LYSWSCKRSYKSGFVWHDLSEDDLILPAHGNEYVLKGSELFDESNSDNFSPISNVKMQNVKLLPGPASSRSHDEASSSSS MNGKETRTSQEDELSQEPHTGSSDVSPESRDEKSDSLSLALTEYKIYKTDGLADASTQTEEQVSRTRAQKTCTRGVSTED RSLEPECHEICQAEVPEVKDNPKMCKDTIYPSPSTSSPLSFGSKAETLESLIRADASKLSSFRTQEEEGARVPPTNTRLK ASNLLMQLISCGSISVKNHSFGLIPSYKHRFSDSKFPSPLFSTSFMLGEFDCLAENPKLMNLRLEDKEYFSGSLIETKLK EGEAHKVLKRSSSYNDERTYKDQKPQEDKEETSSGHSKCIPRSIKASLTKHPRSESMKSPVSDGPRNSSDRFDGSGISSV TSNGSSKRISEPSSGKKQSKRIDSFREEEVIKIEESLLQELGL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF031043
1 464 464 2.1E-137
IPR021182
PANTHER
PTHR31083:SF6
3 518 516 1.9E-188 –
PANTHER
PTHR31083
3 518 516 1.9E-188
IPR010369
Pfam
PF06136
33 419 387 5.2E-140
IPR010369
MobiDBLite
mobidb-lite
143 196 54 - –
MobiDBLite
mobidb-lite
150 165 16 - –
MobiDBLite
mobidb-lite
166 196 31 - –
MobiDBLite
mobidb-lite
408 436 29 - –
MobiDBLite
mobidb-lite
408 506 99 - –
MobiDBLite
mobidb-lite
460 492 33 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0485000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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