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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0485000 |
| Transcript ID | LotjaGi3g1v0485000.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein upstream of flc; TAIR: AT2G28150.1 UPSTREAM OF FLC protein (DUF966); Swiss-Prot: sp|Q9LX14|UFC_ARATH Protein UPSTREAM OF FLC; TrEMBL-Plants: tr|K7LTP4|K7LTP4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0485000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90216199..90219399) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGCGCGGATGAAGAAGTATAGGCAACAAGTGAGTCCTGAGAGGGCCAAAGTGTGGACTGAGAAGTCACCTAAGTA CCATCAGAGTCTGAAGGTTCCTGTGATTTACTATCTCTGTAGGAATAGGCAGCTGGAGCACCCTCATTTCATGGAGGTCC CTCTTTCTTCCCCAGATGGGCTGTACTTGAGAGGTACAAAATGGAAACACGTTCTTGTTTTGGGTATGTGGTTGTAGGGT TTTAAAATTTTCCTTTGTGGATTGTGGTTTTTGAGGGGTTTGTTTGTTTTTTGTGCAGATGTGATTGATAGACTAAATGC ATTGAGAGGTAGAGGCATGGCTTCCTTGTATTCATGGTCTTGTAAGAGGTGAGCAAGTTTTTAACACTTTCTATGTCATT ATGTCCTGTTGTTTAATTTGTGTTGAGAAAAAAGAAAGAAAGGGGGAAATCAGGAAACTTGGTGCATGTTTGGATACACA GTAGATTTTCACCTAGGAATGAAGAATTGATTCTATAAGAAGCTAATCCTAGTTGCTTTTGTGGGAGTGCAATTAATTCT GGAAGGTTTTACGAGAATCCAAACATGCTCTTGATAGGCTTCTTCTTTGCCCCTTGTTTCCCTTTTGAATAATAGTTTAG TAATTACTGCATACAATTTTAATCATTGATATTAGTTTTTCTTGTAATTCAGAAGCTACAAGAGTGGATTTGTGTGGCAT GATCTTTCTGAAGATGATTTAATTTTACCAGCCCATGGAAATGAGTATGTCCTCAAAGGCTCTGAGCTCTTTGATGAATC CAATTCAGGTAAAGAAGATATTTTGTTTATTCGTCTTCAAATTATAGTCATTTGGTAGGTTCTGAATGATATAGAATGCC TGTACCCTTAGCCTTTGTGGCTTTTGCTTTGCAGATAATTTCAGTCCCATTAGCAACGTCAAAATGCAGAACGTGAAGCT GCTGCCGGGGCCAGCTTCTTCTAGAAGTCATGATGAAGCCTCTTCCTCATCTAGCATGAATGGGAAAGAGACAAGAACCT CCCAAGAGGACGAGCTTTCTCAAGAACCGCATACGGGCTCCTCGGATGTTTCCCCGGAGTCTAGGGATGAAAAAAGCGAC TCTCTGAGCTTGGCATTGACAGAGTACAAAATTTACAAGACTGATGGATTGGCAGATGCTTCCACTCAGACAGAAGAACA AGTTAGCAGAACCAGAGCTCAGAAAACTTGTACAAGGGGTGTATCAACAGAGGATAGATCATTAGAACCTGAATGCCATG AAATATGTCAAGCTGAAGTTCCAGAAGTGAAAGATAATCCGAAAATGTGCAAGGATACCATTTATCCTTCTCCTTCAACT TCAAGCCCCTTATCTTTTGGGAGTAAGGCTGAAACTTTGGAATCTTTGATTAGAGCTGATGCTAGCAAACTGAGCAGCTT TAGGACCCAGGAAGAGGAGGGCGCTCGGGTGCCGCCAACCAACACGAGGCTGAAGGCCTCAAATTTGCTGATGCAACTGA TCTCATGTGGCTCGATATCAGTGAAAAACCACAGTTTTGGCCTTATTCCTTCCTATAAGCATAGGTTTTCTGATTCAAAA TTCCCTTCTCCGCTGTTCTCCACTTCTTTTATGTTAGGGGAATTTGATTGCTTAGCAGAGAATCCAAAGCTGATGAATCT TAGGTTGGAAGACAAAGAATACTTTAGTGGGAGCTTAATTGAGACTAAACTGAAGGAAGGAGAGGCACATAAAGTTCTGA AACGTTCTTCTTCCTACAATGATGAAAGGTAAGTCTTGCTTTCAAATATTCTCTTGCAGCATTACAAATTCGCACGTGGA AGAGTTATTCATGCTGGTGTTTTCTTAATTTTGTAAGAAATGGACTAGTCATAATCAAATAGTTATTCAATGTTGAGGAA ATAGTATATGGATTGCTTAAGGTCTGATGTAGCAACAGGATTGATATCTAGAATGTAGTAATTCTTTAAGTTTTGAATTG TGAATAATGCCTGATTAGGAAGAAAACCAGTGACTTGTGCAAGTGGTCTATAGGTGATAATGCTAACTGCTTGAATCTGT TCATAGAAGGCTAATTGAGTTTCTCTCAGATCTGAAAATATTTTTCCAGCTTGAGTTATATTCTCCAACATTAAATGAAT GATTTCAAAAGTAACATAACATCCACTAAGCTGTGAATTGTTACAAATCAAAGTCCACACATTGACATTTTGCAAATGCT TTCACTATTTCCCCCATATCACTTAGCATTTTTAGGTTTTTATTAAAAGAAATCACTTGAACATCTTCTGTCCCTCTGAT CATGGTTAAAAAGCCTATGTTTTTGTATTTCTTTTGTCAATGGGCTGTTAAAGCTAACATAAATTCATGAAATATAAGTA CTTTCACATGCTTGTTTATATGTTTATTTCTTAAAGGTTACAAAGAATTGCTGTTTTGTGAACATAACATGCTGATTAAA AAAAAGAATACTTGAAATATCTAATATCAGACCACCTCCCTTTTCTCAACAAAAGGAAAAGGAAAGGACAAAAAGGGGTG GAGTGATAATCTGAAAAATAATAAATAGAGGCACATATATCATGTTATTATGAGCATCATTGCTGTTTTATTTCTTTCTT ATAATATGAGCTCTTTACATGGAGGCTAATCTATATAACATGCCACTGGGGTCAATGATTAATGTGGTTGGCTTTTTGGA TTCGTGATTTACAGTTTTGTCTTTGGTTATGATTGGATTCTGAATGGAACATGATAGTTATTATTACATTACATCCTGGC CAATGTGTCATCTGTAACATAACCAATGCACAAATGTGCAGGACATATAAAGACCAGAAACCACAAGAAGACAAAGAGGA AACATCCTCAGGACATTCAAAATGCATTCCACGATCAATCAAGGCTTCATTGACCAAGCATCCACGAAGCGAATCCATGA AATCCCCCGTTTCTGATGGGCCAAGAAACTCATCGGACAGATTTGATGGATCAGGCATATCCTCAGTAACATCTAACGGT AGCAGCAAAAGAATCTCCGAACCTTCATCAGGGAAGAAGCAGTCAAAGAGGATAGATTCGTTTAGGGAAGAAGAGGTGAT CAAAATAGAAGAAAGTTAAGTATTGACTCTATCTTTTCCCTTCTAAGATTCTTAAATTTAGAGAAGTGATTTTAGTGTTA A
CDS sequence (LotjaGi3g1v0485000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCGCGGATGAAGAAGTATAGGCAACAAGTGAGTCCTGAGAGGGCCAAAGTGTGGACTGAGAAGTCACCTAAGTA CCATCAGAGTCTGAAGGTTCCTGTGATTTACTATCTCTGTAGGAATAGGCAGCTGGAGCACCCTCATTTCATGGAGGTCC CTCTTTCTTCCCCAGATGGGCTGTACTTGAGAGATGTGATTGATAGACTAAATGCATTGAGAGGTAGAGGCATGGCTTCC TTGTATTCATGGTCTTGTAAGAGAAGCTACAAGAGTGGATTTGTGTGGCATGATCTTTCTGAAGATGATTTAATTTTACC AGCCCATGGAAATGAGTATGTCCTCAAAGGCTCTGAGCTCTTTGATGAATCCAATTCAGATAATTTCAGTCCCATTAGCA ACGTCAAAATGCAGAACGTGAAGCTGCTGCCGGGGCCAGCTTCTTCTAGAAGTCATGATGAAGCCTCTTCCTCATCTAGC ATGAATGGGAAAGAGACAAGAACCTCCCAAGAGGACGAGCTTTCTCAAGAACCGCATACGGGCTCCTCGGATGTTTCCCC GGAGTCTAGGGATGAAAAAAGCGACTCTCTGAGCTTGGCATTGACAGAGTACAAAATTTACAAGACTGATGGATTGGCAG ATGCTTCCACTCAGACAGAAGAACAAGTTAGCAGAACCAGAGCTCAGAAAACTTGTACAAGGGGTGTATCAACAGAGGAT AGATCATTAGAACCTGAATGCCATGAAATATGTCAAGCTGAAGTTCCAGAAGTGAAAGATAATCCGAAAATGTGCAAGGA TACCATTTATCCTTCTCCTTCAACTTCAAGCCCCTTATCTTTTGGGAGTAAGGCTGAAACTTTGGAATCTTTGATTAGAG CTGATGCTAGCAAACTGAGCAGCTTTAGGACCCAGGAAGAGGAGGGCGCTCGGGTGCCGCCAACCAACACGAGGCTGAAG GCCTCAAATTTGCTGATGCAACTGATCTCATGTGGCTCGATATCAGTGAAAAACCACAGTTTTGGCCTTATTCCTTCCTA TAAGCATAGGTTTTCTGATTCAAAATTCCCTTCTCCGCTGTTCTCCACTTCTTTTATGTTAGGGGAATTTGATTGCTTAG CAGAGAATCCAAAGCTGATGAATCTTAGGTTGGAAGACAAAGAATACTTTAGTGGGAGCTTAATTGAGACTAAACTGAAG GAAGGAGAGGCACATAAAGTTCTGAAACGTTCTTCTTCCTACAATGATGAAAGGACATATAAAGACCAGAAACCACAAGA AGACAAAGAGGAAACATCCTCAGGACATTCAAAATGCATTCCACGATCAATCAAGGCTTCATTGACCAAGCATCCACGAA GCGAATCCATGAAATCCCCCGTTTCTGATGGGCCAAGAAACTCATCGGACAGATTTGATGGATCAGGCATATCCTCAGTA ACATCTAACGGTAGCAGCAAAAGAATCTCCGAACCTTCATCAGGGAAGAAGCAGTCAAAGAGGATAGATTCGTTTAGGGA AGAAGAGGTGATCAAAATAGAAGAAAGTTAA
Protein sequence (LotjaGi3g1v0485000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEARMKKYRQQVSPERAKVWTEKSPKYHQSLKVPVIYYLCRNRQLEHPHFMEVPLSSPDGLYLRDVIDRLNALRGRGMAS LYSWSCKRSYKSGFVWHDLSEDDLILPAHGNEYVLKGSELFDESNSDNFSPISNVKMQNVKLLPGPASSRSHDEASSSSS MNGKETRTSQEDELSQEPHTGSSDVSPESRDEKSDSLSLALTEYKIYKTDGLADASTQTEEQVSRTRAQKTCTRGVSTED RSLEPECHEICQAEVPEVKDNPKMCKDTIYPSPSTSSPLSFGSKAETLESLIRADASKLSSFRTQEEEGARVPPTNTRLK ASNLLMQLISCGSISVKNHSFGLIPSYKHRFSDSKFPSPLFSTSFMLGEFDCLAENPKLMNLRLEDKEYFSGSLIETKLK EGEAHKVLKRSSSYNDERTYKDQKPQEDKEETSSGHSKCIPRSIKASLTKHPRSESMKSPVSDGPRNSSDRFDGSGISSV TSNGSSKRISEPSSGKKQSKRIDSFREEEVIKIEES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 463 | 463 | 2.9E-137 | ||
| PANTHER | 3 | 516 | 514 | 2.8E-187 | – | |
| PANTHER | 3 | 516 | 514 | 2.8E-187 | ||
| Pfam | 33 | 419 | 387 | 5.0E-140 | ||
| MobiDBLite | 143 | 196 | 54 | - | – | |
| MobiDBLite | 150 | 165 | 16 | - | – | |
| MobiDBLite | 166 | 196 | 31 | - | – | |
| MobiDBLite | 408 | 436 | 29 | - | – | |
| MobiDBLite | 408 | 516 | 109 | - | – | |
| MobiDBLite | 460 | 492 | 33 | - | – | |
| MobiDBLite | 493 | 516 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0485000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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