Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0488500
Transcript ID	LotjaGi3g1v0488500.1
Lotus japonicus genome version	Gifu v1.2
Description	ATPase ASNA1; TAIR: AT3G10350.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|O27555\|ARSA_METTH Putative arsenical pump-driving ATPase; TrEMBL-Plants: tr\|A0A072UVY6\|A0A072UVY6_MEDTR Arsenical pump-driving ATPase-like protein; Found in the gene: LotjaGi3g1v0488500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:90626786..90632893) extracted from Lotus japonicus Gifu genome v1.2.

ATGAAATCTAACATAGATGGGCCCATACACTTTTTAAGTTTTCTCTTCATTTTCTCTCTCATCCAAGCACATGTATGTTT ATTTTTCTAAACCTTTTCACCCTATCTTTTTTCCTTCCCTTCAAAATAATGTCAAACAAACACAATGTTCCGAGGTTTTA GAAAAGAAAACAGTTCTCCCAAAAGAAACTCTAGTAGCATTGTCATAGAATCGTGTGTTTCTGCAAACTCTTGGAACCAT GGCGGCGCTGGTTGCGCGCATGTTGAAGACCCAGAAACGCTCCTTTCTTCCTCACATCACCAACACCATCTCGTCGTCTT CGTCACCTTTCATTCTCCCAACTGTGTCGCAAGGTATTTTCGTTCTCACCATCAACCGATCATAACTTTAGACAGTACCT ATGTAAAATGTAATTGTATTGAATTTCTTAATGCAGTGAGACTGCTAGGAAATGCTGCAGAAGGTGTATGTGGGTTTGAT GAGATGGTGGCAGGGGACCAGAGGAAATATTATTTGCTTGGTGGGAAAGGAGGGGTTGGGAAAACAAGCTGTGCTGCTTC TCTAGCTGTCAAATTTGCAAATGAAGGACATCCCACTATGGTGGTATCAACTGACCCTGCTCACTCCTTAAGTGACTCTT TTGCCCAGGTACCTAATGTGCCACAATGTTTTTGAGTTGAAACTTTCATATGTTTCTGCAATCTTGGTAACAGTTCCATT AGGATTTGACAGGGGGCAGGCTTGTTCCAATTCAAGGATTGAATTCTCCATTATATGCTCTTGAGGTAAGATTTTTTACT AAAGAAAACAGAACATACCAAATTTAGGCCCTATTTGAGAGAGCTTATCTGATAGCATTAGCGCTTGTGCAAGTGTTTTG GAGAGCTTATGGTAGGCCATAAGCTGTTTTGAGCTTATTTTCATAAGCTACTCAGGATAGCTTATGAAAAAAAGCTTATG CTTATATGCTTATATATAGCTTATTTTCAATTTATTTCAATAAAGTTTTTAAAATAGCTTATGAATAAGTGCTTATGTCA GCGCTTACGACCATAAGCGCTTAATTAAGCTGTTTTCCCAAACGGGACCTTAATATTGCTTTGATGGGTATGTTGCAATA GTGCATGTCACTTTTTATTGAACATTTCTTTGTTGACAGATAAACCCTGAGAGATCTATGGAAGAGTTCAGTGCAGCTAG TCAAAAACTTGGTGGTGGGGGCATTAAGACTCTAATGCAAAGCATGGGGCTTGGAATGATTGCTGACCAGGTGGTTTCTG CATTTAGTTTTTAGTGTTTCCTTAATGTAACTGTTAATGACTTGGTTGTATATAATGTGACTGATTTTTTTTCTTTCTCA TTTATCGTGTAATTTTTGGAACGTGTGATACAGTATTCAGTTCTAATATTTATTCGGGGCTTATTATAGTTTGCTGTGTT TATATGATTAACCAGCCAATACACACTTAATGAAAGTAGTTGTAGTACAATAGTACATTGTTTGCTAAATTAAAAATAAT CCCCATTAAGATCAAATTAAAGCTCTGCTTCAGCTATTTTTGACTATTTCTAAAAACACATTAGAAATTGCTTGAACATT GAAGGAAGAGTATAAAATATTTGAGATTGTCTTAAAAGTTTGGTACTGCAATGCAAGCTACAAACTGCATTGTCTTTTAA TCCATTTGTTTCCTTGTTTGTTTTCACCTACATCAGGATGTGGGTTTTCTTAAGCCATTAAATGTTATTTTAACATTCTT TCTCTTGCTTAATGTCATTGTCATAGCTAGGGGATCTCAAGCTAGAAGAGCTATTGACCACTCCTCCCCTGGGAACGGAT GAGATTGTTGCTGTGTCTAAGGCAATTTTCTGTTTCAGTAATAAGAATTTATTGTATTAAGCATTGTATGAAAATGTACT CTGCTTCTATTTCCTAATAGTGCTACTTTGATCCAGGTCATGCAATTTCTTGAGTCACCAGAATATAATATGTTCAACCG GATAGTTTTTGATACAGCGCCAACGGTCTGTGATTAGTAGTTTCTTTATAATATATTTAAACTTATTTTTAAAAATAATT ATTTATATCTCTTCTATTTGTTAATAGGGCCATACACTTCGGCTACTGTCACTTCCTGACTTCTTGGATGGATCTATTGG CAAAGTTATGAAGGTACATGTATGCATATTGAACTTTAAATTTATAGTTATCTAGGATATGGTCATCTATTCTCGAATTT TACTAACAAAATCAATGACATTATCCAGTTGAAGAGAAAATTGGGTTCCACCTTCAAATCTTTGCTGGGAAAAGAAGAAC CTCAAAATGATAAAGTAAGCTATTATATTGTGTTTATAAGATCCCGGCCCCTTTTCAAATTTCTAAATATTCTGTATTTG AACTTGCAGTCAGATGAACTTGGGAAGCTTAAGGAGAGGGTCGCAAAAATACGTGACCTTTTCCATGATCCAGACACTAC TGAGTTCATAATAGTGACGATTCCCACGGTAATTCTAAGCTTCTCTTTTGCAAGACTGTTGATAATGGAAACTGAAATTT TGAAGTTGACATAGACGTACTTTGGAATTGGCATTTATTTATGCCTAGTTTTCTGAGTTCCTTCTTCATTTTAGGGTAGA AAAATCAAGTTTCACTCACTGGTTTATTTGTGGACAATGAAATTTGATCCCATATATAAGCAATTTTGATTTTTTATCAT TTTTGCAACTTTTGCAAATAAAAGCAGCAATTTTAGTTAATTGATTTCAAGTTAATACCTTAAATACTTAGACAACCAAT TGGAATGGATCCTCTTATGTTAAAATTTTACATGACATTCTCATGTGAAAACTGTGTCTATTTTTCTCTTTTCGAAGAGA TTAAATTGGTGGATCCTATTTAAATTTGTGAATATATATTTTTTTTGGTTGAGAAAATTTGTGAATATTGATAAGGAGAG GATAACACAAAATTTTCACATGATAAGATCACATGAAATTTTGTTGAGAGGATCCATTCTCAGTTCCCACAACAAACAAA CTTGATTCATTTTCAGTGAAAAGAAAAAACAGTCCCTATGAAGCCGCAAACTATACATGGCCAGTACATGTAATATTGTG AGCTTATGCTTTGAAAAGTGTTGACCATGCACAATGTCACTGAATAATTTGATCTTTGTAGGGCATGTATTCAGCAAACC ATTAGACTTGGCATGCTTATATATCCGTGCATTATTATTTTGCTTATAAGTCTTGTGTTGTGTGGTTGTAGCTAAATATA ATGAGCTAAGAATCGAAAATTCTGGTAATCAAGTACACTTTAGAGTTTAGAATGTAGCAACATGCATGTGGATTCAACCA TACTTTATTTTTCCAGCAGTATCATTTAAACGGGCTTGCTTGTCTCAAATATGGTTGTATTATACCTTTTGTCAGCATAA AATTCACTTTATTTTTATTTTCTAACCTCTAATTTTCTGTTATCTATGTACTATTTACATTTCAACCATATTGTAATTAA ACATTGTAAAATCTTCAAGGTTATGGCAATCAGTGAATCATCAAGGTTACACGCATCCTTGAAGAAAGAAAAGGTACCTG TTAAGAGACTTGTCATTAATCAGGTCTTGCCTCATGCATCCGACTGCAAGTTTTGTTCAATGAAAAGGAAGGTAATCAGA TCAGATACTATTCATCCATCTTTCAATGTCTTAATTGTTAGTCACACAAGTATATTGGGGTTTTCATACTTTCTTATTGG TCGAACTTTCTTGGTAAGAATATTATTCTTTTTGTTCTATGAAAATATGGAAACCTTCCTAGCTTTGTTGGTTATTAAGG GGTATTGCCAGGCTGAGAACCCAAAACAATAAATAATAGGATTACAGATTTTAGATTAACAGGGTACATGATACATGGAA AAGGTGGAATCATAATTAATATTGTGCTGACAATATAATATACTGTAGCAATTTGATCCATGTACTTGCTGTAAGAACTA AGAAGTGTAAAACAAGCACTTGGCAGCTCAATATGTTGTACTATTTATTGAACATTGACAGAGCAAAAGCTGCTCAAAAT AATTATTCTCATGTGAATAATACTGATAATCACTTGCATGAAAACATAAGCAGTATTTATATAAAATTCCGCTGCTTGAT TGCTGTTTCTGTACATGCAGGATCAAATGCGTGCAATTGAAACTATCCACAATGATTCAGAACTTTCTGGTTTGAGATTA TGCGAGGCACCCTTAGTGGATATGGAAATAAGGGGTGTTCCAGCTCTCAAATTCATGGGGGATATGCTTTGGAGATAAAA CATACACCACAGAGAATTTATTCATTTCAGGGATACGGCTCACATAATAGAATCGCTTAGAAGTTTAGCATCTCCTACGA AGAGTGTTACATTCTTTTAAATTTTAGATGTTAGTATTCCTTTTTTTCTTGTTTAATGAATTGGTGTGATGGGTTCACAA CTCCACACTGATTAGTTTTTGACACAGCATCACCGGTTGTTACATCTAGCAATTCATGCAAATGTTTATTGGATGAATAG AGAAGTTTATCGCAATCTTCAAATTTATTGATAGTGTCATATACAATTTGGCTGCTGCCACCACCAAACCAATTGGTGTT GGCATGAATGATAATGTTAAAACTGTTGAAGCATATTGAAAACTAGTAATTGTGTAGAAAATTGCAATTACTGTTAAGGG TTATCTTTTAAGAAGTCTAATCCTACAATATCCACAGCTAACACTTGCTCTCAAACTCTGATGATCTTCTGTTCATACCA AGATACAACTCATGTCAAGTTTCTTTACCAGTTGATGGGCACATTCCATGATTTGTAGCACCAGCCAGAGTGTTGGACAT CTTTAATCAGTCCAAAAAAATCAGAGGGATTGAAGTGCTGAAACTATTTCTTTTGGAAGGTTACCATACAAAAAAATGCA AGCATGCGGCTAATAGCCCCTGTCACAACGAGGAGGAGTAAACAATAGTTGTAGTGTTTGAGATCATAGCCGTATGAATT GAGTGCACCACATCGACTAATTAACCAAACTCCAGAATATCTACATTACAAAAAAAATCATGTCAAACATCAGCTCATGA GGAAAATCTAGAGATATATATCATCATGAACATTATCAGAAGTCAAACCTTTTAGCATTTGATATTACAAATGCTTCAAG AGCCCACTTGGTGTAGCACAAATCAGATAGAAAGCGCACTATACTGCTATCTTCTTCATTATCATAGGTTGCTACGAGTG TCAAAACTACTGGAAGTAACACTGACCACTGCATGACACAACAGATTGGTTGTAACTTAGAAAGAGCAAGGCATTCATCA CCTAAGGAGATTGAAATCTTATATCCCTAAATTGTGTTTCATTATCTATCCCACCAATAAAATGTTGACGTATCAATTAA AACCACGATGTAAATTTGTAACTGTCTTATTCATGTCTTTTTCAATTGACATGATAGGATTTTATTGGTGAGACAAGAAA TTGAGACACCATTTGGAGACAAAAGATCTTGATCCGACCTAAGGTTGGAAATATCTAGTGCTCACCAGCTGGGCTGGACC GGGTTGAAGGGAGATTGCCAATACATAAGCTATGCCAGTGACACAATACACCAAACATAGCAGAACCATGTAGTTATCTG TGACAGTTGATCTTGGATTGTTGAAGAAATAGAACATTGAGAGATAAAACAGAGGTTTGACAACTGTGCTGAAATGGTCA ACCGTGTCCTTTGAAAGAAAGTAAGCCAGGCTACTCATCCCGGAAGCACTTTCCCTCCAGTAGTGCAACTTGTCCATTGA GAATGATCTCATAGCCGCAATCTTGGACAGGAGTGCTGAAAGTGAGACATTATCAGATGACAAAGAGGTAGGAAAATTGG TAATAGTATAGCTAACAATTGTAAAGATGAAACTTACAAACTGCTATTACTGTGTATGTATAACCGGTTGCTCCAAAAGA TTCATCACTCACTTTGGCAAGTGTTCCTAAGCAGAGGCCAGCTAGCAGCAAAATCAGAAAATCTACAGCTTGTGTTCTAG CTTCTCTTAGCCTCTGCTTACCAACTCT

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0488500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGCGCTGGTTGCGCGCATGTTGAAGACCCAGAAACGCTCCTTTCTTCCTCACATCACCAACACCATCTCGTCGTC TTCGTCACCTTTCATTCTCCCAACTGTGTCGCAAGTGAGACTGCTAGGAAATGCTGCAGAAGGTGTATGTGGGTTTGATG AGATGGTGGCAGGGGACCAGAGGAAATATTATTTGCTTGGTGGGAAAGGAGGGGTTGGGAAAACAAGCTGTGCTGCTTCT CTAGCTGTCAAATTTGCAAATGAAGGACATCCCACTATGGTGGTATCAACTGACCCTGCTCACTCCTTAAGTGACTCTTT TGCCCAGGATTTGACAGGGGGCAGGCTTGTTCCAATTCAAGGATTGAATTCTCCATTATATGCTCTTGAGATAAACCCTG AGAGATCTATGGAAGAGTTCAGTGCAGCTAGTCAAAAACTTGGTGGTGGGGGCATTAAGACTCTAATGCAAAGCATGGGG CTTGGAATGATTGCTGACCAGCTAGGGGATCTCAAGCTAGAAGAGCTATTGACCACTCCTCCCCTGGGAACGGATGAGAT TGTTGCTGTGTCTAAGGTCATGCAATTTCTTGAGTCACCAGAATATAATATGTTCAACCGGATAGTTTTTGATACAGCGC CAACGGGCCATACACTTCGGCTACTGTCACTTCCTGACTTCTTGGATGGATCTATTGGCAAAGTTATGAAGTTGAAGAGA AAATTGGGTTCCACCTTCAAATCTTTGCTGGGAAAAGAAGAACCTCAAAATGATAAATCAGATGAACTTGGGAAGCTTAA GGAGAGGGTCGCAAAAATACGTGACCTTTTCCATGATCCAGACACTACTGAGTTCATAATAGTGACGATTCCCACGGTTA TGGCAATCAGTGAATCATCAAGGTTACACGCATCCTTGAAGAAAGAAAAGGTACCTGTTAAGAGACTTGTCATTAATCAG GTCTTGCCTCATGCATCCGACTGCAAGTTTTGTTCAATGAAAAGGAAGGATCAAATGCGTGCAATTGAAACTATCCACAA TGATTCAGAACTTTCTGGTTTGAGATTATGCGAGGCACCCTTAGTGGATATGGAAATAAGGGGTGTTCCAGCTCTCAAAT TCATGGGGGATATGCTTTGGAGATAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0488500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAALVARMLKTQKRSFLPHITNTISSSSSPFILPTVSQVRLLGNAAEGVCGFDEMVAGDQRKYYLLGGKGGVGKTSCAAS LAVKFANEGHPTMVVSTDPAHSLSDSFAQDLTGGRLVPIQGLNSPLYALEINPERSMEEFSAASQKLGGGGIKTLMQSMG LGMIADQLGDLKLEELLTTPPLGTDEIVAVSKVMQFLESPEYNMFNRIVFDTAPTGHTLRLLSLPDFLDGSIGKVMKLKR KLGSTFKSLLGKEEPQNDKSDELGKLKERVAKIRDLFHDPDTTEFIIVTIPTVMAISESSRLHASLKKEKVPVKRLVINQ VLPHASDCKFCSMKRKDQMRAIETIHNDSELSGLRLCEAPLVDMEIRGVPALKFMGDMLWR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10803:SF17 View details on PTHR10803:SF17 Search for proteins/transripts with this domain View external data on PTHR10803:SF17	32	381	350	9.3E-193	–
PANTHER	PTHR10803 View details on PTHR10803 Search for proteins/transripts with this domain View external data on PTHR10803	32	381	350	9.3E-193	IPR016300 Show description in modal box View details on IPR016300 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	51	381	331	8.1E-90	–
SUPERFAMILY	SSF52540 View details on SSF52540 Search for proteins/transripts with this domain View external data on SSF52540	60	346	287	1.76E-39	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02374 View details on PF02374 Search for proteins/transripts with this domain View external data on PF02374	62	379	318	6.7E-71	IPR025723 Show description in modal box View details on IPR025723 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR00345 View details on TIGR00345 Search for proteins/transripts with this domain View external data on TIGR00345	65	378	314	2.4E-77	IPR016300 Show description in modal box View details on IPR016300 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd02035 View details on cd02035 Search for proteins/transripts with this domain View external data on cd02035	75	376	302	4.11798E-83	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of View details of GO:0008144 View details of GO:0032559 View details of GO:0035639
GO:0016887 View details of GO:0016887 AmiGO InterPro QuickGO	Molecular function	ATPase activity	Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.	Subterm of View details of GO:0017111

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0488500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0488500.1