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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0493200 |
| Transcript ID | LotjaGi3g1v0493200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Extensin-like protein; TAIR: AT1G21310.1 extensin 3; Swiss-Prot: sp|A8MUU9|YV023_HUMAN Putative uncharacterized protein ENSP00000383309; TrEMBL-Plants: tr|Q43682|Q43682_VIGUN Extensin-like protein; Found in the gene: LotjaGi3g1v0493200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91149636..91151735) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAACTTAGTTTGGCAGAGGCAGTGGCCTCAACTCCTCTGTGGAGTAGCATTGTGCCTAATGGCTCTCAGTGTTGC CGCTGATTATGATAAGCCATACTATGCAGCACCACCATCTCATGAGCAACACCCAGATAATCATGGCCCCAATGTCCCTC CATATTACTACAAATCCCCTCCTCAACCTTATGTCTACAAATCACCACCACCTCCATCCCCATCTCCACCACCACCTTAT GTCTACAAGTCTCCTCCTCCCCCTTCTCCTTCACCACCACCTCCATATGTGTACAAGTCCCCTCCACCACCATCTCCCTC ACCTCCTCCACCTTATGTCTACAAGTCTCCTCCTCCACCATCTCCATCACCACCACCTCCATATGTGTATAAGTCACCTC CTCCTCCATCTCCTTCACCACCCCCACCATATGTTTATAAGTCTCCACCACCACCATCTCCATCACCACCACCTCCATAT GTTTATAAATCTCCTCCTCCACCATCTCCTTCACCACCTCCTCCATATGTGTATAAGTCACCACCTCCTCCATCACCTTC ACCACCTCCACCATATGTTTACAAGTCTCCACCACCACCATCGCCTTCACCACCCCCTCCATATGTTTACAAGTCCCCAC CTCCTCCTTCTCCTTCACCACCTCCACCATATGTTTACAAATCACCACCTCCTCCTTCTCCTTCACCACCTCCACCATAT GTTTACAAGTCTCCACCACCGCCATCTCCTTCACCACCCCCTCCATATGTGTATAAGTCACCACCTCCTCCTTCTCCTTC ACCACCTCCACCATATGTTTACAAGTCACCACCTCCACCATCCCCATCACCACCCCCTCCATATGTTTACAAGTCCCCAC CTCCTCCTTCTCCTTCACCACCTCCACCATATGTTTACAAGTCTCCACCACCACCATCTCCTTCACCACCCCCTCCATAT GTGTATAAGTCACCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGTATACAAGTCACCACCTCCACCATCCCCATC ACCACCCCCTCCATATGTTTACAAATCCCCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGCTTACAAGTCTCCAC CACCACCATCTCCTTCACCACCCCCTCCATATGTTTACAAATCTCCACCTCCTCCATCACCCTCCCCTCCCCCACCATAT GTTTATAAGTCTCCACCCCCGCCGTCACCTTCACCTCCTCCACCATATGTCTATAAGTCTCCACCCCCACCCTCACCTTC ACCACCCCCACCCTATGTTTACAAGTCACCACCACCACCATCACCTTCACAACCACCTCCATACATTTATAAGTCTCCTC CTCCACCATCTCCTTCACCCCCTCCTCCATACATCTACAAGTCACCACCACCACCATCCCCTTCACCACCACCTCCATAT GTCTACAAGTCCCCACCCCCACCATCTCCCTCTCCACCACCTCCATATGTTTATAAATCTCCACCTCCACCATCTCCTTC TCCTCCTCCACCATACATTTACAAGTCCCCACCACCTCCTTCTCCATCCCCACCACCTCTGTATGTCTACAAATCTCCAC CCCCACCATCTCCCTCACCTCCTCCACCTTATGTCTATAAGTCACCACCTCCACCATCCCCTTCACCACCGCCTCCATAT ATCTACAAGTCCCCACCCCCACCATCTCCCTCCCCACCACCTCCATATATTTATGAATCTCCACCTCCACCGTCTCCTTC TCCTCCACCACCATACATTTACAAGTCCCCACCACCTCCTTCTCCATCTCCACCACCTCCATATGTCTACAAATCTCCAC CCCCACCATCTCCCTCACCACCTCCACCCTATGTCTATAAGTCACCACCTCCTCCTTCTCCTTCACCACCTCCACCATAT GTATACAAATCTCCACCACCACCTTCTCCGTCACCTCCTCCACCTTATGTCTATAAATCACCACCACTTCCTTCACCTTC TCCTCCTCCTCCTTATATATACAAGTCCCCACCTCCACCATCTCCAACCCCTCCTTATAACCCCTACCTCTATAAGTCAC CCCCACCTCCTGTGTATTAA
CDS sequence (LotjaGi3g1v0493200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAACTTAGTTTGGCAGAGGCAGTGGCCTCAACTCCTCTGTGGAGTAGCATTGTGCCTAATGGCTCTCAGTGTTGC CGCTGATTATGATAAGCCATACTATGCAGCACCACCATCTCATGAGCAACACCCAGATAATCATGGCCCCAATGTCCCTC CATATTACTACAAATCCCCTCCTCAACCTTATGTCTACAAATCACCACCACCTCCATCCCCATCTCCACCACCACCTTAT GTCTACAAACCTCCACCATATGTTTACAAGTCTCCACCACCACCATCGCCTTCACCACCCCCTCCATATGTTTACAAGTC CCCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGTTTACAAATCACCACCTCCTCCTTCTCCTTCACCACCTCCAC CATATGTTTACAAGTCTCCACCACCGCCATCTCCTTCACCACCCCCTCCATATGTGTATAAGTCACCACCTCCTCCTTCT CCTTCACCACCTCCACCATATGTTTACAAGTCACCACCTCCACCATCCCCATCACCACCCCCTCCATATGTTTACAAGTC CCCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGTTTACAAGTCTCCACCACCACCATCTCCTTCACCACCCCCTC CATATGTGTATAAGTCACCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGTATACAAGTCACCACCTCCACCATCC CCATCACCACCCCCTCCATATGTTTACAAATCCCCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGCTTACAAGTC TCCACCACCACCATCTCCTTCACCACCCCCTCCATATGTTTACAAATCTCCACCTCCTCCATCACCCTCCCCTCCCCCAC CATATGTTTATAAGTCTCCACCCCCGCCGTCACCTTCACCTCCTCCACCATATGTCTATAAGTCTCCACCCCCACCCTCA CCTTCACCACCCCCACCCTATGTTTACAAGTCACCACCACCACCATCACCTTCACAACCACCTCCATACATTTATAAGTC TCCTCCTCCACCATCTCCTTCACCCCCTCCTCCATACATCTACAAGTCACCACCACCACCATCCCCTTCACCACCACCTC CATATGTCTACAAGTCCCCACCCCCACCATCTCCCTCTCCACCACCTCCATATGTTTATAAATCTCCACCTCCACCATCT CCTTCTCCTCCTCCACCATACATTTACAAGTCCCCACCACCTCCTTCTCCATCCCCACCACCTCTGTATGTCTACAAATC TCCACCCCCACCATCTCCCTCACCTCCTCCACCTTATGTCTATAAGTCACCACCTCCACCATCCCCTTCACCACCGCCTC CATATATCTACAAGTCCCCACCCCCACCATCTCCCTCCCCACCACCTCCATATATTTATGAATCTCCACCTCCACCGTCT CCTTCTCCTCCACCACCATACATTTACAAGTCCCCACCACCTCCTTCTCCATCTCCACCACCTCCATATGTCTACAAATC TCCACCCCCACCATCTCCCTCACCACCTCCACCCTATGTCTATAAGTCACCACCTCCTCCTTCTCCTTCACCACCTCCAC CATATGTATACAAATCTCCACCACCACCTTCTCCGTCACCTCCTCCACCTTATGTCTATAAATCACCACCACTTCCTTCA CCTTCTCCTCCTCCTCCTTATATATACAAGTCCCCACCTCCACCATCTCCAACCCCTCCTTATAACCCCTACCTCTATAA GTCACCCCCACCTCCTGTGTATTAA
Protein sequence (LotjaGi3g1v0493200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNLVWQRQWPQLLCGVALCLMALSVAADYDKPYYAAPPSHEQHPDNHGPNVPPYYYKSPPQPYVYKSPPPPSPSPPPPY VYKPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYVYKSPPPPSPSPPPPYAYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYVYKSPPPPSPSQPPPYIYKSPPPPSPSPPPPYIYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYIYKSPPPPSPSPPPLYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYIYKSPPPPSPSPPPPYIYESPPPPS PSPPPPYIYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPLPS PSPPPPYIYKSPPPPSPTPPYNPYLYKSPPPPVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| Phobius | 25 | 28 | 4 | - | – | |
| Phobius | 29 | 594 | 566 | - | – | |
| MobiDBLite | 33 | 58 | 26 | - | – | |
| PRINTS | 52 | 64 | 13 | 3.7E-12 | – | |
| PRINTS | 70 | 86 | 17 | 3.7E-12 | – | |
| PANTHER | 84 | 197 | 114 | 2.3E-188 | – | |
| PANTHER | 84 | 197 | 114 | 2.3E-188 | – | |
| PRINTS | 90 | 102 | 13 | 3.7E-12 | – | |
| MobiDBLite | 92 | 404 | 313 | - | – | |
| PRINTS | 106 | 127 | 22 | 3.7E-12 | – | |
| PANTHER | 192 | 308 | 117 | 2.3E-188 | – | |
| PANTHER | 192 | 308 | 117 | 2.3E-188 | – | |
| PANTHER | 304 | 428 | 125 | 2.3E-188 | – | |
| PANTHER | 304 | 428 | 125 | 2.3E-188 | – | |
| PANTHER | 368 | 483 | 116 | 2.3E-188 | – | |
| PANTHER | 368 | 483 | 116 | 2.3E-188 | – | |
| PANTHER | 423 | 512 | 90 | 2.3E-188 | – | |
| PANTHER | 423 | 512 | 90 | 2.3E-188 | – | |
| MobiDBLite | 429 | 548 | 120 | - | – | |
| PANTHER | 480 | 593 | 114 | 2.3E-188 | – | |
| PANTHER | 480 | 593 | 114 | 2.3E-188 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0493200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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