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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0499900 |
| Transcript ID | LotjaGi3g1v0499900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rhomboid protein; TAIR: AT3G59520.1 RHOMBOID-like protein 13; Swiss-Prot: sp|Q9M1B5|RBL13_ARATH RHOMBOID-like protein 13; TrEMBL-Plants: tr|I3T833|I3T833_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0499900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91810993..91811845) extracted from Lotus japonicus Gifu genome v1.2.
CTCAGACTCAGTAGAATTGAGAAGGGAATTTGGGAAAATGGGGAAGCCTTTGTTTTATGAGATCTTGGAAAAACCAGCTA CTAGTGTTCTTATAGGAATATGCAGTGTGATCTGGTTCTACATACAGAAGAAAAATATTGGGTATTCACATGTGGGTCTG AGTTATGAGACTGCTATTGAAGGGCAGCATTGGAGGATAATCACCTCTGCATTTTCCCATATTAGTGTTATTCATCTTGT TTTTAACATGAGTGCACTTTGGAGTCTTGGGGTGGTAGAGCAGCTAGACCACTTAGGCCTTGGTGTTGAGTACTATTTGC AGTATACACTTGTGTTGGTTATTTTATCAGGAGTGCTGGTTCTGGCTATGTACCACTTGTTGATTCAAAGATTTAAGATA GAGTATTTTCGTCGAGTTACGGCTGTTGGGTATTCCTGTGTTGTTTTTGGGTGGATGACAATTCTTTCGGTGAAGCAACC GTCTTCCAAGTTGGATCTGTTTGGGTTTCTGTCTCTCCCTATCAGTTTTGCGCCGTTCGAGTCGCTTATTTTCACTTCGA TTATTGTTCCACAGGCAAGTTTTCTTGGCCATTTATCAGGGATTGTTGTTGGGTATGCTATAGCATGGGGTTTGATTCAT GGGATGAGCAATTACTGGGCACTTTCCTTGTTGGGTTGGATTGTGCTTGTCTTTGTCTTGAGTTTAAAGAGATCGGGTGT GCTTGAGCTAAACTTCCTTGAGATTGAATCTGTTACTGATCCTTCCTTACCGTCTGTGCGGTTTTTGGCATCTGGCAATG GGAGAACCTTGCAGATGAGTGCATTGCCGGATGGAAATATTGACCTTGTCTAA
CDS sequence (LotjaGi3g1v0499900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGCCTTTGTTTTATGAGATCTTGGAAAAACCAGCTACTAGTGTTCTTATAGGAATATGCAGTGTGATCTGGTT CTACATACAGAAGAAAAATATTGGGTATTCACATGTGGGTCTGAGTTATGAGACTGCTATTGAAGGGCAGCATTGGAGGA TAATCACCTCTGCATTTTCCCATATTAGTGTTATTCATCTTGTTTTTAACATGAGTGCACTTTGGAGTCTTGGGGTGGTA GAGCAGCTAGACCACTTAGGCCTTGGTGTTGAGTACTATTTGCAGTATACACTTGTGTTGGTTATTTTATCAGGAGTGCT GGTTCTGGCTATGTACCACTTGTTGATTCAAAGATTTAAGATAGAGTATTTTCGTCGAGTTACGGCTGTTGGGTATTCCT GTGTTGTTTTTGGGTGGATGACAATTCTTTCGGTGAAGCAACCGTCTTCCAAGTTGGATCTGTTTGGGTTTCTGTCTCTC CCTATCAGTTTTGCGCCGTTCGAGTCGCTTATTTTCACTTCGATTATTGTTCCACAGGCAAGTTTTCTTGGCCATTTATC AGGGATTGTTGTTGGGTATGCTATAGCATGGGGTTTGATTCATGGGATGAGCAATTACTGGGCACTTTCCTTGTTGGGTT GGATTGTGCTTGTCTTTGTCTTGAGTTTAAAGAGATCGGGTGTGCTTGAGCTAAACTTCCTTGAGATTGAATCTGTTACT GATCCTTCCTTACCGTCTGTGCGGTTTTTGGCATCTGGCAATGGGAGAACCTTGCAGATGAGTGCATTGCCGGATGGAAA TATTGACCTTGTCTAA
Protein sequence (LotjaGi3g1v0499900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKPLFYEILEKPATSVLIGICSVIWFYIQKKNIGYSHVGLSYETAIEGQHWRIITSAFSHISVIHLVFNMSALWSLGVV EQLDHLGLGVEYYLQYTLVLVILSGVLVLAMYHLLIQRFKIEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSL PISFAPFESLIFTSIIVPQASFLGHLSGIVVGYAIAWGLIHGMSNYWALSLLGWIVLVFVLSLKRSGVLELNFLEIESVT DPSLPSVRFLASGNGRTLQMSALPDGNIDLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 2 | 269 | 268 | 6.4E-128 | – | |
| PANTHER | 2 | 269 | 268 | 6.4E-128 | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Gene3D | 10 | 200 | 191 | 1.1E-18 | ||
| Phobius | 12 | 29 | 18 | - | – | |
| SUPERFAMILY | 13 | 199 | 187 | 3.66E-24 | – | |
| Phobius | 30 | 57 | 28 | - | – | |
| Pfam | 48 | 201 | 154 | 1.5E-26 | ||
| TMHMM | 57 | 79 | 23 | - | – | |
| Phobius | 58 | 80 | 23 | - | – | |
| Phobius | 81 | 91 | 11 | - | – | |
| Phobius | 92 | 116 | 25 | - | – | |
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 117 | 122 | 6 | - | – | |
| Phobius | 123 | 142 | 20 | - | – | |
| TMHMM | 123 | 145 | 23 | - | – | |
| Phobius | 143 | 153 | 11 | - | – | |
| Phobius | 154 | 175 | 22 | - | – | |
| TMHMM | 155 | 177 | 23 | - | – | |
| Phobius | 176 | 181 | 6 | - | – | |
| TMHMM | 182 | 201 | 20 | - | – | |
| Phobius | 182 | 200 | 19 | - | – | |
| Phobius | 201 | 205 | 5 | - | – | |
| TMHMM | 206 | 223 | 18 | - | – | |
| Phobius | 206 | 223 | 18 | - | – | |
| Phobius | 224 | 271 | 48 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0499900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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