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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0501300 |
| Transcript ID | LotjaGi3g1v0501300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosome biogenesis protein BMS1; TAIR: AT1G06720.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog; TrEMBL-Plants: tr|I1LQB2|I1LQB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0501300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91983364..91991103) extracted from Lotus japonicus Gifu genome v1.2.
CTAGGGTTACTCCTTAAAAAAAAACTAAAATTAGAATTACTAATATATCATATTTACCGTAAAACCGGTGTAACCGCCAT TGCTGCTGTTCTGAAACTGTAAAACCTTGACGACACTCTGGTCTTCAGCTACCAGCTCCCACCATGGCCGTCAACGATGC TGATCAATCCAACAAGGCTCACAGGACCCGTCAATCTGGTGCCAAATCCTTCAAGAAGAAGCAGAACAAGAAGAAGAAGC AGGACGATGATGATGGACTCATTGACAAACCTCAAAACCCTAGAGCCTTCGCCTTTTCTTCCACTAACAAAGCCAAGCGG TTGAAATCACGCGCCGTCGAGAAGGAGCAGCGTCGCCTCCATGTTCCCATTACCGACCGCTCTTACGGTGAATCTGCCCC TTATGTCATCGTCGTGCAGGGTCCACCCCAGGTGGGGAAGTCACTGTTGATCAAGTCTTTGGTTAAGCATTATACCAAGC ATAATTTGCCTGAAGTTCGAGGTCCAATTACTATTGTGTCAGGTTTGTGCAGATTTTTTGTTTACCTTATTGTAACTTGC TGTGTGTGGTTTGCTGTGTTGAGTAAATGTTTGATCACATTTATATGACAGGGAAGCAAAGGAGGCTGCAGTTTGTGGAA TGCCCTAATGATATCAATGGCATGATAGATGCAGCAAAGTTTGCTGATCTAGCACTTCTCCATAGATGGGAGTTATGGTT TTGAAATGGTTAGTTATATATAATAAGAGGGTCAATATAGGGTTGTCAGTTTTGCATGTGTTCATTTATACTCATTCAGT CACTGTTTGGTTTGCTATTCTGTTTTTTGAAATTTTGATTTGCTTGCAGGAAACATTTGAGTTCCTTAATATTTTGCAAG TTCACGGGTTCCCGAAAGTCATGGGGGTTCTTACACATCTTGATAAATTCAAGGATGTTAAAAAGTTGAGGAAAACCAAG CAACGGCTCAAACACCGCTTTTGGACTGAAATATATGATGGTGCTAAGTTGTTTTACTTATCAGGCCTTATTCATGGAAA GTAAGTAGTTTGATGAATATGTTATGGGGATTAAATGGTTTTTTTTTCTTTTACACCTGCTGTCTAGTAGTGTTTCCTAA GCTTAGTTACAACTTTTACTATGTAGTTTATAACATTGCTATTCCTAACTGAACAGGTATGTCAAGCGTGAAGTTCACAA TCTTGCTCGATTTATTTCGGTCATGAAGTTTCATCCTTTATCTTGGAGAACTTCCCACCCTTATGTTTTGGCAGATCGTT TTGAAGATATCACTCCTCCTGAAAAAGTGCATTCAAATAATAAATGTGATAGAAAAATCACACTTTATGGTTATCTCAGA GGCTGTAATTTGAAAAAGGGCAATAAGGTGTGTTCCACAGCTCTACCATACTATTGTCTCTGAACCAATTAGTTGAAAGA TGATGATGATCAAAATATAATTCTAAATCATAATATTTGTTTCTAGGATTTTCATACGAATTTTGCTGAAATTTGATTCA AAATTACTAATTCATGCTCATGTTTTTTTGTATGTGTTAATCAACTACTAATCAATTTTTTACGCTATTTATGCAATCTA TCAATCTCCTGCCCTGAATATTGGAGAGCTTCTTCCTCCTCCTTGAAGGAATTTGAGTATATATTATATAAAAGGAATTC AGTTATGTGATGGTTTAAGAGTTTTAGTTTGATGCTTGCTAGAATTGTGTGATTAACTTTGAATATCTGCTTTGAGTGAT ATGGTGTTCAGGTGGTACTTGAATTGTGCTGTTAATTTCCCCCCAACTATTTGTACTTTAATTTGTATTCTGGATATCAG GTGCACATAGCTGGGGTCGGTGATTATAGTTTAGCTGGTGTTACTGCTTTACCTGATCCATGTCCTCTTCCATCTGCTGC CAAAAAGAAGGGACTGCGTGATAAGGAGAAATTATTCTATGCTCCAATGTCTGGCCTTGGGGATCTCTTGTACGACAAAG ATGCTGTATACATAAATATTAATGATCACTTTGTTCAATTCTCAAAAGTGGATGATGAAAACTCTGCTATTACGAGAAAA GGTCATTGGATAGTTTTTTTTCATCATGCACTTTATCCTATTTTAGAAACTTTTATTATTATGATCATATGATGGCAGAT TTATTTGTCTTTTGTGCATATTATCCTTGTGAAATTATACTATGATCATATGGTAGCAATTCTTTTTATAGAAAATTTCA GGTACTGTGCTGTCTTGGAACTTTTATCACTCCTCTATGTCACTCCTTGATTCCTGTATCGTTACAAATAATATTACCAG TTAAATTTTATGGTTATATCATGCATAACACAATGGGATAAATTGTTTATTAAAAAGTGTACTTTCATGCATTCGACAGG AAATGAAAGAGATATAGGAGAAGTTTTGGTGAGATCGCTTCAGGAAACCAAGTACCCAATCAATGAAAAGCTGGAGAATA GCATGATCAATCTTTTTGCTCAATCTTCAGAAGCTCTAGCTGAGGCTCAGGGTACAAACATGGATGTCGAGCAAGATGGC ATAATAGAGACTGTGGATTATAACGAGATGGATTCAGATGGTGGTTCAGAATCATCTGATCAGGATGAAGCTGATGCCAT GACAGGTTCAGGATTACCCGACCAAGCTGAAGACGATGCAGCGGGTGACAAATCTACAAACAAAGACCACTTAGAAGAAC ATATTGAGTTTCACAATGGAAGAAGAAGGAGAAGAGCAATCTTCGGTAATGATGCTGATCAAAGTGATCTGATGGTAAGC ATAAGTTATCGTGTTTGTTGTGTAATGCGTGCAATCATGTATCCTTTCATGCTTACAGAAATTAAATTAGCTTGTATTGT GCCCATTGCCTTTTAAATTCATTCAGGTATTTGTATGCCTAGAGCCGTTTGGATACTGACCACAGAGCATCTATTGGAGC TTCTCTACAAGAAAATGCACCAGATAAACTCCAATAAATGCTCTTTGGTCTGCATATAAACATGCTTATAGGATCAAGTT CAAACTACATTAGTAACATTACTACACTGAATTGTAGGCAAGCTTCAAACTTATATTGGATTTACTGATTCAATATTTTG AATTCAATTGTTTTACTTTTGTTTTATGTGATATGTATGTCTGCATTGACAATTTTCTGGTGGAATGCTCATAATTTCTT GACTGACTTCATTGATAGGATTCATCAGGAAATGAGGATGGTTCTGCCAGTGATGATGGGGCATCTTCTGATTCAGAATC TTTAAACGAAGAGGAGGAAGATGGTAAAATTGTGCAGTTTTCTCCTTTGATTATTAAGATTCATGCATAGATATTAAAAT TATTCGTCATAACATTCTCTTTTCTCACTTATTCTTGCCATCTGAGTTGCAACAAATAATTGACTTGTTACTGGAGACTT ACTATATTGATGATTCCTTTCTTTATTTTCCTCATAGATGACATGGGAAATGTTTCAAAGTGGAAAGAGTCTTTGGCTGA AAGAACACTCTCACAGAAAACTCCTAGTTTGATGCAACTGGTCTATGGGGAATCTACTGCTAATTTAATATCTATAAACA AAGAGAATGATAGTAGCGAAGATGAGGAAAGTGATGGTGACTTTTTTGAGCCTATAGAAGAAGTGAAAAAGGTTGGTCCT TTACTAGCTTGCATGATTTGTAGCTGTACCTAATTTTTTGTGTAACTATTGCTTTTCAATGGCACCTTCCCTGTTAATGG CAATTAGATATGCAATACATGAAATTTACATGTTTGAAGACTGAGGATTTGTTGACCTTCAGAATATCTGCGTATTTTCT TCATAAACTAAGTGTTTGCTTTTGTCTTTTAAACTGCACAGAAAAATGTGAGAGATGGATTTAATGATGGAAACGTCAAC ACTGAGGATTATTCCAAGTGCGCACAATTTATGGATAAGAGATGGGATAAGAAAGATAATGAGGAGATTCGCAACCGTTT TGTGACTGGAAATTTGGCAAAAGCAGCACTCAGAAATGGACTACCAAAGGCTACTACTGAAGAGGAAAATGATGATGTCT ATGGGGACTTTGAAGATTTAGAAACAGGAGAAAAAATTGAGAATAATCAAACAGATGATACGACACACAATGGAGATGAT TTGGAAGCAGAGACGCGGAGGCTTAAGAAACTTGCTCTTCGTGCAAAATTTGATTCTCGATATCCTTTTTCTCTCTCTTC ATGTACCTAATTAACATGAATGGGTAGTTTATACTTTCTGATTCCTGCACCCCCAATTTTTTTTTTTCTCATAATCACGG GGCATGGCACATTCTCTGGTTGATTGCCTTAAGTGTCTGAGTATGCTAGAGTCATGACTGTTATCAAAAGGCTGAAACCC CCCCCCCCCCCTCCCCTAAAAAAATTCAGGAAGGACAAGAAAGTGGTAAGGAATTTATTCTCAATCTATGGAGATGATCT GTGATGTCTTTTCATGCTAAATTGTTTTATTTAAACTTTCTTTGGGTTAAGAACCTTCGAAGTTTGAAGTTTTCTAATTA GGGCCTAGGCTAACTCAGTGGTGGATGGACTACAAGGGTGATATGTTTTTTTTGTAATTATGTCACAGCCATTGACATGA TAGCAATGTGGAATGTGAACCTTTTGTTTTCTGCGTGACTTGACTAATCAAATTGCAAACAAATTGTTAGTTGCATTACT TCAGTATGTTAGTTACCTTAATTTTGATCCACATTTGATGATGACCCTGGGACACCAGAGGAAGATGGTGGTAATGAAAA TGAAGCCAAGTTTCGTCGAGGTCAGCCTAATGAAACCAGCTACTTTGACAAGGTACAACTTGTTGCTTACATTTAATGTA AACTACCGTGTTATAGAATGGCTACTAATTCTTGTGTTTCGCCAGTTGAAGGAGGAGATAGAGCTCCAGAAACAAATGAA TATTGCTGAACTGAACGATCTTGATGAGGCTACCAGATTGGAGATAGAGGGTTTCCGAACAGGGACATACGTAAGATTGG AGGTCCATGATGTTCCTTGCGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGATTGGAGGAGTCGGTTTAGGG GAGGAAAATGTTGGATACATGCAGGTCAGTAGTAGGCTTTTCTAAAGCATAGCTCCTCCTCATAGAGTTTGTGGTAACAA TTGTTAGAAAATTTTAGTCAAGAAAATTATTGATATATGCCAAAGATGTCTATGATTAAGGACACTATCATAAGGGAAAT TTGTGTTGATCCCTAGTCAGTGGTTGGGTTTTCTAATTGGTCATTTGTTTAGTGATATAATTTCAAGTCTAAAAGATATG TCACTATATTTGGTAGTAGATGATCAAAATGAGTATATCCTGTAATTAGGTTTGGAATAGAGCTTGATGGTTTGGGTAGA GGTTCCTTTTGTTGTTCCAGGAAAATAATAACTTGTCTTTATTTTATTGATGTTGGCATGGGCCATCTGTATGGAAGGTA AGGAACATAATGAGTTGTTTGTACAGAAGATGAAAAGTTGGTTTCTAGAACATGTAATGAATTGTTAATAATAGTAATAA GTTTAATGAGTTGATGAAACTTTCTTATGTTTCCCCTTTCTTTTAAATTCATCTGTCCCCCCCCCCCCCCTCTTTCTCTT TCTGCTTTTCCAATCTTTTTTCGCTTTCTCTTACCTTCCAGGCCAGGTTAAAGCGACACAGGTGGCATAAGAAAGTCCTG AAGACTAGAGACCCAATTATTGTTTCTGCTGGATGGAGGCGTTACCAGACAACTCCTGTATATGCTATTGAGGATCACAA TGGAAGGCACCGTATGCTGAAATACACTCCAGAACACATGCATTGCCTAGCTATGTTTTATGGTCCTCTTGCTCCTCCCA ACACCGGAATAGTCGCTGTTCAGAATTTATCAAACAATCAGGTCGGGTTGTTTCTCTTGTTGATTAGATTTTGTTAAAGT CCTCTCGAAATGTGCACTCTATTTTTGTACGTACCTTTATTCTTTTGTTTTTTCCCCCTCTAGTATTTGTGTTTAGTGTC TGAAATGTTGTATTTGATTTATCAGGCAACATTTAGGATTACTGCAACTGCAGTTGTACTTGAGTTTAATCATGCAGCAA GGATAGTGAAAAAAATCAAATTGGTCGGTTACCCATGCAAGATATTCAAGAAGACAGCTCTTATCAAGGAAATGTTTACT TCGGATCTTGAAATAGCTCGGTTTGAAGGTGCGGCCATTCGAACAGTCAGTGGGATAAGGGGGCAGGTCAAGAAGGTATC TGAGTTGTCACTTTGAAGACAATCGCATTACTGATTATTTGTCCCATTAGTTAACTAAAAGACAACTAAATAATGTTTCA GTTGGATAGTTAAATTTTGCAATCTATTTTGTGCTGAGTTATTTTTAATTTGGCAGGCTGCAAAAGAAGAGATAGGTAAC CAACCAAAAAGGAAGGGTGGGATAACCAAAGAAGGAATTGCTAGGTGCACCTTTGAGGACAAAATTTTGATGAGTGACAT TGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCTCAGTTCTATAATCTGTTGACAACGGCACTGCAGCCTCGTGACC AGACCTGGAAAGGAATGAGAACTGTTGCAGAATTGAGAAGAGACCACGATCTTCCTGTGCCTGTAAACAAAGATTCTCTT TACAAGAAAATTGAAAGAAAACCTAGAAAGTTCAATCCATTGGTGGTTCCTAGGAGTCTACAGGAAAGACTTCCTTTCAC ATCCAAACCCAAGGAGACACCCAAGCGAAACCAGCCATTACTTGAACAGAGAAGGCAAAAGGGTGTTGTCATGGAACCTC GCGTGCGAAAAGTTCTTGCTCTTGTTCAGCACATCCAGTTAATAAATCATGACAAGGTAAGCATGTCGTCTCATTGATTT TTGCTTGCCTTCTTATTTGAAATTTCTATCCGAGATTTCTTAGCTGATAGTGAAAAGAATTAGGGGACCATATTCCATTG CAAATAAGTATTTCAGCCACTTTATGGATGTTTTTTTCTTTATATTCAAAGTTGAGGATGACTGGGAAGTGGGAACACAT TTTTATGATGCTCTCAATTATTATTATTTTTCTCATTTTAAAGTACTATCTGGCATGTCTTTTGACATTGTTTTTCCTAC GAGCTTGTAGATGAAAAAGCGAAAACTTAAGGAAAACGAAAAGAGGAAAGCACATGAAGCAGAAAAAGCAAAAGAAGAGC TGTTGTCGAAAAAGCGCCGGAGAGAAGAAAGACGAGAGAAGTACCGGACACAAGACAAGTCGAGTAAGAAAATGCGGAGA TCAGAGGCTTGAGTATCCAAAGTTGATTTCATTTGAACTTCTTCACTCAGTTTGAGCATCATGGACATTGTTCTTGATTG CGGGCATAATGCTAAGGAAATTACTAAGATGTCTGTCCACTAGGCTTTCAGCTACTTATAGCTCAATGTTATTATTGATG TATTATGGTTTTGTCATGCTAAGTGAGGATTATAATATATAATTATGAGAGTATGTAATACGGGAGTTTTGGGATTTTTT TCCTCAATTTTGAGCCTCTTAGCTAGTGGTTGAGGTCCCTTCTACTTTGATGGTGTAAACTGTAAAAATTATTCATTTAT TTCCAGGGAAATTAACGAGCAGCTTTTTTGACAAATAGAAAAAGGGCTTTTAGCTTGAGT
CDS sequence (LotjaGi3g1v0501300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATATTGCTGAACTGAACGATCTTGATGAGGCTACCAGATTGGAGATAGAGGGTTTCCGAACAGGGACATACGTAAG ATTGGAGGTCCATGATGTTCCTTGCGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGATTGGAGGAGTCGGTT TAGGGGAGGAAAATGTTGGATACATGCAGGCCAGGTTAAAGCGACACAGGTGGCATAAGAAAGTCCTGAAGACTAGAGAC CCAATTATTGTTTCTGCTGGATGGAGGCGTTACCAGACAACTCCTGTATATGCTATTGAGGATCACAATGGAAGGCACCG TATGCTGAAATACACTCCAGAACACATGCATTGCCTAGCTATGTTTTATGGTCCTCTTGCTCCTCCCAACACCGGAATAG TCGCTGTTCAGAATTTATCAAACAATCAGGCAACATTTAGGATTACTGCAACTGCAGTTGTACTTGAGTTTAATCATGCA GCAAGGATAGTGAAAAAAATCAAATTGGTCGGTTACCCATGCAAGATATTCAAGAAGACAGCTCTTATCAAGGAAATGTT TACTTCGGATCTTGAAATAGCTCGGTTTGAAGGTGCGGCCATTCGAACAGTCAGTGGGATAAGGGGGCAGGTCAAGAAGG CTGCAAAAGAAGAGATAGGTAACCAACCAAAAAGGAAGGGTGGGATAACCAAAGAAGGAATTGCTAGGTGCACCTTTGAG GACAAAATTTTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCTCAGTTCTATAATCTGTTGAC AACGGCACTGCAGCCTCGTGACCAGACCTGGAAAGGAATGAGAACTGTTGCAGAATTGAGAAGAGACCACGATCTTCCTG TGCCTGTAAACAAAGATTCTCTTTACAAGAAAATTGAAAGAAAACCTAGAAAGTTCAATCCATTGGTGGTTCCTAGGAGT CTACAGGAAAGACTTCCTTTCACATCCAAACCCAAGGAGACACCCAAGCGAAACCAGCCATTACTTGAACAGAGAAGGCA AAAGGGTGTTGTCATGGAACCTCGCGTGCGAAAAGTTCTTGCTCTTGTTCAGCACATCCAGTTAATAAATCATGACAAGA TGAAAAAGCGAAAACTTAAGGAAAACGAAAAGAGGAAAGCACATGAAGCAGAAAAAGCAAAAGAAGAGCTGTTGTCGAAA AAGCGCCGGAGAGAAGAAAGACGAGAGAAGTACCGGACACAAGACAAGTCGAGTAAGAAAATGCGGAGATCAGAGGCTTG A
Protein sequence (LotjaGi3g1v0501300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNIAELNDLDEATRLEIEGFRTGTYVRLEVHDVPCEMVEYFDPYHPILIGGVGLGEENVGYMQARLKRHRWHKKVLKTRD PIIVSAGWRRYQTTPVYAIEDHNGRHRMLKYTPEHMHCLAMFYGPLAPPNTGIVAVQNLSNNQATFRITATAVVLEFNHA ARIVKKIKLVGYPCKIFKKTALIKEMFTSDLEIARFEGAAIRTVSGIRGQVKKAAKEEIGNQPKRKGGITKEGIARCTFE DKILMSDIVFLRAWTQVEVPQFYNLLTTALQPRDQTWKGMRTVAELRRDHDLPVPVNKDSLYKKIERKPRKFNPLVVPRS LQERLPFTSKPKETPKRNQPLLEQRRQKGVVMEPRVRKVLALVQHIQLINHDKMKKRKLKENEKRKAHEAEKAKEELLSK KRRREERREKYRTQDKSSKKMRRSEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 420 | 420 | 2.2E-213 | – | |
| SMART | 1 | 257 | 257 | 9.8E-113 | ||
| PANTHER | 1 | 420 | 420 | 2.2E-213 | ||
| Pfam | 16 | 258 | 243 | 3.0E-83 | ||
| MobiDBLite | 323 | 349 | 27 | - | – | |
| Coils | 371 | 414 | 44 | - | – | |
| MobiDBLite | 374 | 426 | 53 | - | – | |
| MobiDBLite | 383 | 426 | 44 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. |
Expression pattern of LotjaGi3g1v0501300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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