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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0501400 |
| Transcript ID | LotjaGi3g1v0501400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidylprolyl isomerase; TAIR: AT2G43560.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|O22870|FK163_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic; TrEMBL-Plants: tr|I1LJL8|I1LJL8_SOYBN Peptidylprolyl isomerase; Found in the gene: LotjaGi3g1v0501400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91993032..91997349) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGTCATTCTTTGTCATTCATCTAGATTTGGTTTATCCATTTGCGGACATAATCGCATGGTATTGCATCCTTGGATAT GCCTGCCATGGCTTCCTCTCTGCTTCTTCCACTCTGTAAGTTCTTTCATTTTGCTTCCATCACACTATATACATACAACT CATACATTTTGCATTGCTAATTTCACTGATTTTCTAAACTTAGTTTCTTGGGCAGGTTCTACTTGTGGTAAAACTCCATC TTTTACACCTCCTCAAGCCTTTGCTGTTGACAAACTTCGAAGATTACTTTTCAAAGTCAAGTCTTCAGAGACAAAGGAAT GCACTGCTATGTTCAATACCAATTCACGTAGAGAGATTCTTGGTTTGGCTTTAGGAGTCTCAGGTATCTTCATCCATGCA TTGGATGCTTATGGAGCTGGTTTGCCCCCAGAGGAAAAACCAAAACTATGTGATGACAATTGTGTGCGAGAGCTTGAAAA TGTATGGTGAGATTACTTACACAGTCCCCTTATCTTTCTCCTTTATTGGTTTTATGATTTATCTACTAACATTTGGCAAC AGGTTTTTGAAAGTTAAATAATATGTGAAGGAAAGTTTTTCATTTGAATATTAGGAACCTGAAACATCATTATTATTGTG CACAAGATATATAATAGCAATTTCATTTTAGCTTTAAAACGTGGTTAGAGATTTCACAACCCCACTCCTCTTAAAATATT TGAAACTTTGGAAAAACGACTTCCATGGTAAGGTTCTTCACGAATAATTGCTAGACTTCTAGTCTTATAGAGAACATCAG AAGGATCATCATATGCTGTCACTGCATTTCAAGTTTCGTAACCCAAAAATCCAAGACAATTGAGCTTTGTTCACTTGCTG AGAGAACTAATAGAGACATGCAGTGTCTAATATACTCCCATATTCATTCCAGATGACAGGATCCAAAATTCTAACTGGAA TTAGCAGGGATTCTTATAGTTATACTGATAGATAAGCTGCGGGTTCAAGCCCCGCCAGTCCCGATGAATACAAATCCAAT AAAAAAACATCAATTCATTTTGTGTCTGACGAGCACAGGTTATTTATAGATGCTGGTCTCAACCGGTTCACTAGAATGGT TGGAGAAACTGGAGCTCCTCCCCTCCCTAGAAGCTGATGTTGGTTGTTGGCTAGGCTCAACTTGAACCACCGGGCTTACC CATTTTTAGAATCAGATTGATTTTTCGATCAGAAGTACATAGCATTTGAATCAATTGAGAGCTCATGTTCAATGGTGCAT CATGCAGTAAAGAATATGTTAGTTACACTTAGTAATCAATATGATAGCACTTAAATAAATCGGTAACCTTGTTTAGACCT TTGACCATCAATAAATGATAGGCAAAGTTGTTTTTCTTTATTGACGCTTTAATATCCATGGTCAATAACTGATGCTGTTT TTGAATTTTTTATGCAATGAAGGTGCCTATGGTAACTACTGAATCAGGGTTGCAATACAAAGATATTAAAGTTGGGCAAG GCCCTAGTCCCCCAATTGGATATCAGGTGTGTAAAGTCTTCTGACCTGTTTCAGGATCTCTTGTATGAATGTCTCCACTT TTTAAAGAGGCATCCTATGCCAATTTTGAACCAGTTCAATGCCTAACTACATAATTTGTATCTTGGGAACAACTGAATAT TTTTTTCCTTGTAAATGGTCCGTCTAATCATATATTTATTTTTACCTTCTAGGTAGAAAATACTGTTCAAAGATTGATGA TTTCGTTACCTGATATGGCTTGCCATCTACTAAATTCTTCAAGATAGCAAATGTGCCTGCAGATGCAATGCACCCTTCTT TGCTTCCTTTCAAATCAAAATTAGCCCTTGAAAGGCACCATAGAACTTTGTCAAGTGCTTTAAACATAGTAGACACATCT AAAAATTATGTCATACATAAGGCAATAGCCACATTTATTCCACAACTACAAAGTGAGCCAAGTCTCGTCACAATGGTATA TTTCTTTGGCCAGTCGTTGTTCTCTAATCTCTGCCACCTCCTGTCTGAAGTAGCTGAAGTTTGAAATTACCTTATTAAAG CATTAAAATATCTTCACTTTTTTAACCTTGAGAAAACTTAAACAGATGACTTTTGTCTGGAGTAGTATTAAGTCCTCTAT CAGCATGTTATATTCTTCCCATGTCAAGACTCACTTCATTTCTGTGTGCCTCTGTGTACTGAATTGTTAATACCTTATTT TCATTTCATTATAGGTGGCTGCTAATTATGTTGCCATGGTTCCATCTGGACAAATATTTGATAGGTACCTGCCAATTACG AATTCTATAAATCTTTTCTTGCTCCATGAATTGCAAGATGTGAATTGATGTTTGTTATTGTCTATACAAAAGAGAAGTTT TGTTTGAACATAGCAGAACTGCACCACCATCCTTAACCAGATGCTGATATCTAATTATGCTATTACCAGCTAATAGTATA GGATATTTTGGTGTTTTAAATTTTAACTTGCCTGTTTTTTCTTCAGTTTTTTGCCACCAAAAATATTTGATTTTGAAGAC ATTCTCTTTGACCCTTGAGTACAATGTTAAACTACATGTTTTCACTTTTCTGAGAATGGTTTTGAACTGTTAAAATGACC TAGACAAAGGTGCATTTATGTGTCTCTATTCCCCTTTGTACAGTTCATTGGAGAAAGGCCTGCCTTACCTTTTTCGTGTT GGTTCCGGCCAGGTAAACTCTAAAAGTTGCTTCGAGTTTTATATGCTTAAGAATTTCACCTCATCGTAGCTACCATTCAA ACTTGAAGAACAGTAGTTTCGGGGCCAACATGTTTGATAATCCTTTTAAAAGATTGAGTGATATTAAACCAAATGTAACA GGTGATAAAAGGTCTTGATGAAGGTCTTCTGAGCATGAAGGTAGGAGGGAAGCGTCGACTGTACATACCTGGATCAGTAA GCTTTTATCTTGATTATTGATAGTATATGCTCTGTTAGAAATATAATATAAAGCCGTTCATGTATTCTTTACCCAACAAC TTAAGCTTTTGGAGTAGTTGATTCATGCTCCAATCTATCTTTACCTGTGTCTTTGAAATCTACCGACATAGCAAGATTCA AAGTCTACCAGAAATTTGGATGATTGTTTAGAGTAGAACTTTAAGTCTCTTGTGAAGCTAATGTAGTACTTTTTCCAACA CTAGGCTTCCATATTCGTAGTTTCTCAGTTCATATGTGCATTGACCACAGAATGGTCAGAATTTATATAAGGAAGCATGC TAAAGAACAATCACTCAATGCTGGCAATTTTGTTTGCTGGTTTCATTCACCCTCCTAGAAAATTGTGTTTGGATTTCTTT TAGCAATGCTTAGAAGCATGGAAATTCATGTCTTACAATGAATTGAAATGAAAGTGCTTTTAAATGAATATAACGAAAAT CCAACACTAAGTCTCCGGTTCTAATTGTTGGCTATATATCTTTACTTTGTTTGTCTTATTTGGCAGTTGGCATTCCCAAA AGGCCTTATTTCAGCTCCTGGAAGGCCAAGGGTGGCTCCAAGTAGTCCAGTTATATTTGATGTAAGTTTGGAATATATAC CTGGGCTTGAACTTGACCTGGATGAGGAATGAAATTAGGTTGTCCATTCCATTGATTGTAAGCAGTAAATCCAAAACAAT TGTTAATTATTTTGATAGGCTTGAAACTCATAGCTATGCAGAGTAACATTGTTTGAGTGTAAAATATCAAGATCCAAGAG AATCTTCATTGCATCAAAAAAATCTTCCTCATACATTATACGTTCAACAAGTTTTGTGCACACCTAAAGGTCTAGTGAAC CTGCACTTGGTAGTTTATGTTGGATTCTCTGCTCTCCAAGAGGAATACAAGACATTTGTTCCACCTGGGGAGGAAAAATC TACATTTCTCCTGTAATAGGTATTCCCTCTATTGAAGTAATAATACATGTCGCATAATTTGTTCAGCTATGTTTGGATAT CTGTTACTTCCGGTGCAAACCGATGTTGACACGCATTTCAAGGTAAACGTAAACAGAACTTTTGTTATGAAAGTCTATTC GCATTGCATTTAATTGTTATTCAATCACAACTTAGTTATTCATTTTTTAAAAGTAAACATGGAAAATGGAATGCTTATGA GAGAATTAGTTCAAAATCTCCAGAAGTCCAGAACTACACTGTAATTGAAGACTTGCTCTGCCTGGGCATATCAACCAGAG GATGTCATTGTCCCTCCTTCCAGTTCAATCCCACCGTAATTCCCCCAGTTTTACAGAGAAATTAAATGTTGAAGCACT
CDS sequence (LotjaGi3g1v0501400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGCCATGGCTTCCTCTCTGCTTCTTCCACTCTGTTCTACTTGTGGTAAAACTCCATCTTTTACACCTCCTCAAGC CTTTGCTGTTGACAAACTTCGAAGATTACTTTTCAAAGTCAAGTCTTCAGAGACAAAGGAATGCACTGCTATGTTCAATA CCAATTCACGTAGAGAGATTCTTGGTTTGGCTTTAGGAGTCTCAGGTATCTTCATCCATGCATTGGATGCTTATGGAGCT GGTTTGCCCCCAGAGGAAAAACCAAAACTATGTGATGACAATTGTGTGCGAGAGCTTGAAAATGTGCCTATGGTAACTAC TGAATCAGGGTTGCAATACAAAGATATTAAAGTTGGGCAAGGCCCTAGTCCCCCAATTGGATATCAGGTGGCTGCTAATT ATGTTGCCATGGTTCCATCTGGACAAATATTTGATAGTTCATTGGAGAAAGGCCTGCCTTACCTTTTTCGTGTTGGTTCC GGCCAGGTGATAAAAGGTCTTGATGAAGGTCTTCTGAGCATGAAGGTAGGAGGGAAGCGTCGACTGTACATACCTGGATC ATTGGCATTCCCAAAAGGCCTTATTTCAGCTCCTGGAAGGCCAAGGGTGGCTCCAAGTAGTCCAGTTATATTTGATGTAA GTTTGGAATATATACCTGGGCTTGAACTTGACCTGGATGAGGAATGA
Protein sequence (LotjaGi3g1v0501400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPAMASSLLLPLCSTCGKTPSFTPPQAFAVDKLRRLLFKVKSSETKECTAMFNTNSRREILGLALGVSGIFIHALDAYGA GLPPEEKPKLCDDNCVRELENVPMVTTESGLQYKDIKVGQGPSPPIGYQVAANYVAMVPSGQIFDSSLEKGLPYLFRVGS GQVIKGLDEGLLSMKVGGKRRLYIPGSLAFPKGLISAPGRPRVAPSSPVIFDVSLEYIPGLELDLDEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 29 | 12 | - | – | |
| Phobius | 30 | 228 | 199 | - | – | |
| PANTHER | 39 | 224 | 186 | 1.2E-94 | – | |
| PANTHER | 39 | 224 | 186 | 1.2E-94 | – | |
| SUPERFAMILY | 42 | 215 | 174 | 3.25E-31 | – | |
| Gene3D | 100 | 218 | 119 | 1.4E-32 | – | |
| Pfam | 124 | 215 | 92 | 6.5E-19 | ||
| ProSiteProfiles | 127 | 219 | 93 | 20.251 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). |
Expression pattern of LotjaGi3g1v0501400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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