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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0503600 |
| Transcript ID | LotjaGi3g1v0503600.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Long-Chain Acyl-CoA Synthetase; TAIR: AT1G49430.1 long-chain acyl-CoA synthetase 2; Swiss-Prot: sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2; TrEMBL-Plants: tr|I1LQ81|I1LQ81_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0503600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92195588..92196779) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGGGAACGGTTGGAGTCCCCATGACGACCATTGAGGCCCGGCTTGAATCCGTGCCAGAGATGGGATATGATGCACT TTCCAGTCAGGCCCGTGGAGAAATTTGCCTCAGAGGGAACACCTTGTTCTCTGGTTACCACAAGCGTCAAGATCTTACTG AACAAGTCCTGGTTGATGGTTGGTTTCATACAGGTAAGTCCCCAAGGTTTTATGGATTGATAGGGGCTCTACAATTTCAC TGAAAATTTCCTTTTTCCAGACTTCATTAGGATTCTCCACTTGAATCTTTAGTATATAGACACTACTCAGAATCTTGTAC AACTATTACTAGATAGTATTACAGACACAATTATGTGCAGAAATAGAGTTCTATGGACTGTTTAACACTTGGATATCTCC GTATAATTTATTAATGATCGAAGGGGAAGTCAATGTAAATTGAGCAATCAAAAAAGTTCATTTCGAAGCTGCTTATTAAT TTGGAATCTCAGAATCAGTGTGATAGGGCACATGAAATCAAGTTTAGAGTTTTATCATGAACATCTCTATATTTCACTAT TCTTGTTTTTCTACTGCATATATAGATTATTGAAGTTGCTATTTGCCTCTAATGCAGTGTGTTTTGGAATGACTTGAAAA CCATTACAGGTGACATTGGAGAATGGCAGCCTGATGGAGCCATGAAAATTATTGATAGGAAAAAGAATATCTTCAAATTG TCTCAAGGGGAATATGTTGCTGTGGAGAATATTGAAAACAAGTACCTGCAATGCCCTCTTATAGCATCGGTATGCTTCTG CTCCAATCACAGAACATTCTGATTTGAGAAACAAGAATTGTATCACACTTTTGTTGGATGCTAAGTTTCATTGAAAAGTT GATTTGCAAATTATTAAATTTTGCAGATTTGGGTCTATGGAAACAGTTTTGAGTCTTTCTTGGTGGCAGTGGTGGTCCCT GAAAGAATGGCTCTTGAGGATTGGGCAGTGAAGCATGATGTAACTGATGATTTTAAATCTTTATGTGAAAATCCAAAGGC AAGAAAGTACATTTTGGATGAGCTCAATAGCACTGGTCAGAAACACCAAGTATGTTAGAATGCACTTCATTCTGGTGTTT TGTCATCTTTTTTATTTCCAAAGCTATACTACATTTTACATGATCGATTTTCTTGCAGCTTAGAGGTTTTGA
CDS sequence (LotjaGi3g1v0503600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGAACGGTTGGAGTCCCCATGACGACCATTGAGGCCCGGCTTGAATCCGTGCCAGAGATGGGATATGATGCACT TTCCAGTCAGGCCCGTGGAGAAATTTGCCTCAGAGGGAACACCTTGTTCTCTGGTTACCACAAGCGTCAAGATCTTACTG AACAAGTCCTGGTTGATGGTTGGTTTCATACAGGTGACATTGGAGAATGGCAGCCTGATGGAGCCATGAAAATTATTGAT AGGAAAAAGAATATCTTCAAATTGTCTCAAGGGGAATATGTTGCTGTGGAGAATATTGAAAACAAGTACCTGCAATGCCC TCTTATAGCATCGATTTGGGTCTATGGAAACAGTTTTGAGTCTTTCTTGGTGGCAGTGGTGGTCCCTGAAAGAATGGCTC TTGAGGATTGGGCAGTGAAGCATGATGTAACTGATGATTTTAAATCTTTATGTGAAAATCCAAAGGCAAGAAAGTACATT TTGGATGAGCTCAATAGCACTGGTCAGAAACACCAAGTATGTTAG
Protein sequence (LotjaGi3g1v0503600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGTVGVPMTTIEARLESVPEMGYDALSSQARGEICLRGNTLFSGYHKRQDLTEQVLVDGWFHTGDIGEWQPDGAMKIID RKKNIFKLSQGEYVAVENIENKYLQCPLIASIWVYGNSFESFLVAVVVPERMALEDWAVKHDVTDDFKSLCENPKARKYI LDELNSTGQKHQVC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 173 | 173 | 2.1E-115 | – | |
| PANTHER | 1 | 173 | 173 | 2.1E-115 | – | |
| Gene3D | 1 | 85 | 85 | 8.3E-22 | ||
| SUPERFAMILY | 2 | 149 | 148 | 1.44E-34 | – | |
| CDD | 3 | 170 | 168 | 8.40773E-97 | – | |
| Pfam | 3 | 89 | 87 | 7.8E-24 | ||
| Pfam | 99 | 168 | 70 | 2.5E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi3g1v0503600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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