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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0504200 |
| Transcript ID | LotjaGi3g1v0504200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine/histidine-rich C1 domain protein; TAIR: AT2G16050.1 Cysteine/Histidine-rich C1 domain family protein; Swiss-Prot: sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1; TrEMBL-Plants: tr|A0A0L9V791|A0A0L9V791_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0504200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92230078..92231980) extracted from Lotus japonicus Gifu genome v1.2.
TTTGCAGTAATATGATAACCAATTAACCATAAATCAATTCCTAATTTCATGTACAAAAGATGAAAACTTGTGCTGATGGA AGCAATCTATCATGTTAAGAACATCACCTAAAGTAAATTAAAAGAAACAATGGTATATATTCTCTTGTGGGGGCATTTCC CAATATGCCTTATGTCTGGCTCTTTTCCTTCACGTTGACGTGGTGATTCTCCCATGAACTCTCTATTACCATCATCACCA CCATCTCAGGAGGAGGTATAATTCCTTTCCAATCGCTTCAACCATAAGCCAAAACAATCCCAAACCACTGTAATTGCCCT TCAAGCCAACACAAATCCACATCACACGCCCTCCATTTATAAATACAATTACCCTTAGACAGCAAAATGCACATTCTCAT CAGAAGGACACAACATACAGAAGAACCATGAAATACAGTGAGATATCACACTTCAGCCACCCCCAACACAAGCTCAGATT TGAGCACAATGCATTCCCCTTCAAATGTGATGGCTGCAAAGAAATCGGCATAGGATCGCGTTACAAATGCAGCATATGTG ACTATGATCTTCACATGCAATGTGCCATACCTTCCCCTACTCTGGTCCACCCCTTCTACACCAAATGCTCCTTCCAATTC ATGTCTTCCCCCCCAGGTAACTAGGGACCAAGCCTGGTGTATTAAATGAGTACGTACTCAGATCAATGAGTTGGTTACTA ATTTTCAAATTCAAATTTATTCTCTTATCTTTTTTATATTTTCTGTTATTCTGCACTATTTATACTCATGTAATCTTCAA GTATTTTAATAAGACAAATTTATGTCTTTTCTATTCACCTCCAACTGAAAAAAAATTCCTTTATAGGAGTAGTATTCAAT TGTTATAGATGTTATTTTAGTATTTTTTTAGTGACTCCTCTGATTAAGCATTGTTAATTTTACTTAATGTGTTAAATTTT CGCTGCCCAGGTAACATCCCACGTTACTGCAACGCGTGCGAGAAGGACGTGAACGGCTTTGTCTACCACTGCAAGTCCTG CGGGTTCGACCTCCACCCGTGTTGCGCGAAGCTGCCAATGGTGCTTGATGATGGTGAGGTGAAGCTGTACTTGTACCGGA AAGTGAGCTCACCGTGTCATCGGTGTGGGAGGAAAGGGCGGAGCTGGAGTTACAGGTCGAAGTGCAAGAGCTATAATCTG CATGTGGCGTGTGTGAGGGAGATGGTGGTGGAGAATTGGGACCATGTGTATGTTGCAGGAGGAAAAGGGAGGAATAAAGT GGTGGAGACTAGTGTTCCTGGACTAAAAAATACTCTGTATGCAGCACATAACAGCAGAAGAAGTAAGGGGAAGGTGAAGA AGTGCTGTGAGATTGCAGGGTTGGCTGTGCAGTTTGTGATATCTGCAGTGTTGGGTGATCCTACTGCTCTCATTGCAGGT GTTGTTGGGTCATTGATGTCGTGAGCTTGATGTGCAGAGACAGAGTGCTTTGAGTAATGGTATCAACGAGTATCCAAACA TAAAATTTAGTGGTTTAAGGACTGTACTTGAGACATGTGATGGGTTTATGTAACTCTTTAGTTCCACTTCCGGGATGTTC ATATCTACTTTTAATTCTTCCAAAGTCACTTCTCCAGTTCTCCTCCTTAATAAAAACTGCTTCTTGTAGAGAATTACTTC TCTCCCAAACATGAATAGGCCAAATGCTCGGTGGTACAATTTATATGGAGACAAACACCAACGAACATATTTGATTGGTC AATATGTAACATGTAGCAATGCTCAATAAATAGTATTTGGAACTTTTTTTTTTTGAAGCAGTATTTGGAACTTGAAAAAA TATAATTAGTTTAAAAGAAGGGGTTGTCTAAATAACCCTAGTTAAAAATTGGGTTAAATCACT
CDS sequence (LotjaGi3g1v0504200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATACAGTGAGATATCACACTTCAGCCACCCCCAACACAAGCTCAGATTTGAGCACAATGCATTCCCCTTCAAATG TGATGGCTGCAAAGAAATCGGCATAGGATCGCGTTACAAATGCAGCATATGTGACTATGATCTTCACATGCAATGTGCCA TACCTTCCCCTACTCTGGTCCACCCCTTCTACACCAAATGCTCCTTCCAATTCATGTCTTCCCCCCCAGGTAACATCCCA CGTTACTGCAACGCGTGCGAGAAGGACGTGAACGGCTTTGTCTACCACTGCAAGTCCTGCGGGTTCGACCTCCACCCGTG TTGCGCGAAGCTGCCAATGGTGCTTGATGATGGTGAGGTGAAGCTGTACTTGTACCGGAAAGTGAGCTCACCGTGTCATC GGTGTGGGAGGAAAGGGCGGAGCTGGAGTTACAGGTCGAAGTGCAAGAGCTATAATCTGCATGTGGCGTGTGTGAGGGAG ATGGTGGTGGAGAATTGGGACCATGTGTATGTTGCAGGAGGAAAAGGGAGGAATAAAGTGGTGGAGACTAGTGTTCCTGG ACTAAAAAATACTCTGTATGCAGCACATAACAGCAGAAGAAGTAAGGGGAAGGTGAAGAAGTGCTGTGAGATTGCAGGGT TGGCTGTGCAGTTTGTGATATCTGCAGTGTTGGGTGATCCTACTGCTCTCATTGCAGGTGTTGTTGGGTCATTGATGTCG TGA
Protein sequence (LotjaGi3g1v0504200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKYSEISHFSHPQHKLRFEHNAFPFKCDGCKEIGIGSRYKCSICDYDLHMQCAIPSPTLVHPFYTKCSFQFMSSPPGNIP RYCNACEKDVNGFVYHCKSCGFDLHPCCAKLPMVLDDGEVKLYLYRKVSSPCHRCGRKGRSWSYRSKCKSYNLHVACVRE MVVENWDHVYVAGGKGRNKVVETSVPGLKNTLYAAHNSRRSKGKVKKCCEIAGLAVQFVISAVLGDPTALIAGVVGSLMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 240 | 239 | 9.4E-131 | – | |
| PANTHER | 2 | 240 | 239 | 9.4E-131 | – | |
| Pfam | 9 | 53 | 45 | 5.9E-11 | ||
| ProSiteProfiles | 13 | 67 | 55 | 8.369 | ||
| Gene3D | 20 | 66 | 47 | 2.4E-6 | ||
| SUPERFAMILY | 35 | 115 | 81 | 9.27E-19 | – | |
| Pfam | 73 | 109 | 37 | 3.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular signal transduction | The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. |
Expression pattern of LotjaGi3g1v0504200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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