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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0505800 |
| Transcript ID | LotjaGi3g1v0505800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0496 protein; TAIR: AT4G34320.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q9SYZ7|U496A_ARATH UPF0496 protein At4g34320; TrEMBL-Plants: tr|I1LJG7|I1LJG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0505800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92322307..92324845) extracted from Lotus japonicus Gifu genome v1.2.
CCAGAAACAGTTATGGGGTTTATTTGATGGCATTGAATATTGATTGATTAACCTTAGTTGGAAACTTGCTCTACAATTAA GCCTCAACTCCTCTTCCATCCTAGTTTGTTGTAAAGTGAATGTGTCTTGTGTTGTTATGTTGTGTTGCTTCTCACCTCAT CTCTCTCTCACAACACTGTTGCTTTCCGCGTTAAAATTGAACGTGGATGCAGAGAAGAAAGGGTGACACAGAAACCAAAC CAGTAGTTTTCAAGAGAGAGAAGGGTTTATCATTCATTGCTTCCTTCCTGCATTTTCCATCTTTTACCTCATTTTTCTCA TGCGTGCAAGCGATTCTCACTCCCACCACCCACATTTCTTGCTTCTTAACACCTTTCATCATTGCCTTTAAGATTCTGCA TTCTCTTTCCGCCTCAAATTTCTTTGCTTTACCTCACTTTCCTCTTCATTCTCATAGATCAAAACCCTCTATTAACCTCA ATATAGATTTGCATTGTCCCTGTCTGGATTATTTCCCTATCTGCTGCTTCCGTCGCTTTCAAAGGTTTCAACTTTACAAA AATCTCTATCTGGGTCTGTTTTATTTCACTTGCCCATTTCATATTTTCGACATTTTTTGCTTTTTTTGTTGACTAAGTTG TTAATCTCTGATTTTTGCAGTTGTTTCTGATAGCTTCAATTGGTTTAGCTTGTCTTGAAGTTGTTCACACCTTTGATAGG TAAAAAAATCTAATTTTCTCTTAATTGTTCTCTCATGTATGCAATTATTTCACATAAGGGTTTTCATTCACTTTATTGAT TGCTAGAGTAAGGAATCACATAGGGGTTTTGGTTCTGGTTCTGAGTTTGAATTGGTTGTACTATTTTTTTGTATTAGATC ATTTCAATTGAAGCAATGGGGAATCATATGAGCAAGAAGATTCCTGAAACATCGTCTGCTGTTAATTTGAGTACTGAATT GCATTATAGATCTGAGCTGAGCTCCTATGAGGCTGCTTGCAAGATTGATAATGATTTGCAATCCTTTGACACAAACCTTC AAGCTCGAACGAATCAAGTTATCAACACGCTTGCTGTTGGTGTTGAAGTTCGAGCCCTTTCTTTTGAGTCTTTGAAACAA GTCACGGAATGTCTTCTGGAGATGAATCAGGAAGTTGTTAAAGTGATCTTGGACTGCAAGAAGGATATATGGAAGAGCCA AGATCTGTTTGAACTGGTGGAGGAGTACTTTGAGAACAGTTTGCAAACGTTGGATTTCTGTGCTGCGCTGGAGAAGTGCC TGAAGCGCGCTCGCGATAGCCAGCTTCTGATTCTGGTAGCTCTTCAACAGTTTGAGGAGGAATCATCATCAGAGGTAGGA GGATCGAACAACCGCTACACGAGGACATTGCAAGAATTGAAGAATTTCAAGGATGCTGGTGACCCTTTCACAGAAGAGTT CTTCCAAATTTTCCAATCTGTTTACAAGCAGCAGATACTCATGCTTGAGAAGTTGCAAGTTAGAAAGAGCAAGCTTGACA AGAAGCTGAAATATATTCATTCATGGAGGAAGGTTTCAAGCATGATATTTGTAGCTACATTTGCTGCTGTTTTGATATGC TCAGTGGTAGCTGCAGCAATTGCAGCTCCACCTGTTGCTGCTGCTTTAGCTGCTGCTACCGCAATCCCAATTGGTTCAAT GGGGAAGTGGATTGATTCCCTTTGGAGGAACTATGAAAATGCATTGAAAGGGCAGAAGGAAGTGATTAGCTCAATGCAGG CTGGTACCTATGTTGCTATCAAGGACTTGGATAACATCAGGATTCTCATTGATAAGCTGGAAGTTGAGATTGAATCTCTG TTGCATAATGTGGATTTTGCCATTGCAGAAGAAGCTGTGAAGATTGCAATAGAGGAGATCAAGAAGAAGCTGGGAGTGTT TATGAAGAATGTTGATGATATAGGAGTTCAAGCTGATATTTGTAGCCGTGACATTAGGAGGGCAAGGACTGTGGTCCTGC AGAGAATCATAAAACACCCCAACAATTGAAGTCTGAAGATAATCTTATAGCATGTTTGGATCAGCTTCTTCTCTTTGCTC AGAATCAATTCCGAAACTCATAAGTTATTCACAGAAGCTTCTATCCAGAAAGGATTTCCAAACATGCAGGTCTTGCTAGC CAGTAGTTGTTGTTTGTTGGAAGAACACATCTTTTCCTTATGTATCTTGTGAAATTTGTTGTTTCATGGATCTAAGCACA AATGGGTTCTTGTTGAAGATAATAATCAGACATATTCAGTATGTCTTGACACTTGCAGCTAAATTTTTTATTCTTTTCAT ACAATAGTGTACTCATGCAATTTTTTTATAAATTCATTTTGTTCTTTTAATTTGTTGATGTAAAACTAACTTATGAGTGA GTTTGGTTTCACTTCTGAAAATCACGTTAAATAATAAGTTACAATGTTAGCAATGTGCATCCTAACACGCTTTCGAGTCT TTATATATCTTGAAATTTGTTGGAAAACTAATTATTAGGTAATTAAACTATGGAAATGT
CDS sequence (LotjaGi3g1v0505800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAATCATATGAGCAAGAAGATTCCTGAAACATCGTCTGCTGTTAATTTGAGTACTGAATTGCATTATAGATCTGA GCTGAGCTCCTATGAGGCTGCTTGCAAGATTGATAATGATTTGCAATCCTTTGACACAAACCTTCAAGCTCGAACGAATC AAGTTATCAACACGCTTGCTGTTGGTGTTGAAGTTCGAGCCCTTTCTTTTGAGTCTTTGAAACAAGTCACGGAATGTCTT CTGGAGATGAATCAGGAAGTTGTTAAAGTGATCTTGGACTGCAAGAAGGATATATGGAAGAGCCAAGATCTGTTTGAACT GGTGGAGGAGTACTTTGAGAACAGTTTGCAAACGTTGGATTTCTGTGCTGCGCTGGAGAAGTGCCTGAAGCGCGCTCGCG ATAGCCAGCTTCTGATTCTGGTAGCTCTTCAACAGTTTGAGGAGGAATCATCATCAGAGGTAGGAGGATCGAACAACCGC TACACGAGGACATTGCAAGAATTGAAGAATTTCAAGGATGCTGGTGACCCTTTCACAGAAGAGTTCTTCCAAATTTTCCA ATCTGTTTACAAGCAGCAGATACTCATGCTTGAGAAGTTGCAAGTTAGAAAGAGCAAGCTTGACAAGAAGCTGAAATATA TTCATTCATGGAGGAAGGTTTCAAGCATGATATTTGTAGCTACATTTGCTGCTGTTTTGATATGCTCAGTGGTAGCTGCA GCAATTGCAGCTCCACCTGTTGCTGCTGCTTTAGCTGCTGCTACCGCAATCCCAATTGGTTCAATGGGGAAGTGGATTGA TTCCCTTTGGAGGAACTATGAAAATGCATTGAAAGGGCAGAAGGAAGTGATTAGCTCAATGCAGGCTGGTACCTATGTTG CTATCAAGGACTTGGATAACATCAGGATTCTCATTGATAAGCTGGAAGTTGAGATTGAATCTCTGTTGCATAATGTGGAT TTTGCCATTGCAGAAGAAGCTGTGAAGATTGCAATAGAGGAGATCAAGAAGAAGCTGGGAGTGTTTATGAAGAATGTTGA TGATATAGGAGTTCAAGCTGATATTTGTAGCCGTGACATTAGGAGGGCAAGGACTGTGGTCCTGCAGAGAATCATAAAAC ACCCCAACAATTGA
Protein sequence (LotjaGi3g1v0505800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNHMSKKIPETSSAVNLSTELHYRSELSSYEAACKIDNDLQSFDTNLQARTNQVINTLAVGVEVRALSFESLKQVTECL LEMNQEVVKVILDCKKDIWKSQDLFELVEEYFENSLQTLDFCAALEKCLKRARDSQLLILVALQQFEEESSSEVGGSNNR YTRTLQELKNFKDAGDPFTEEFFQIFQSVYKQQILMLEKLQVRKSKLDKKLKYIHSWRKVSSMIFVATFAAVLICSVVAA AIAAPPVAAALAAATAIPIGSMGKWIDSLWRNYENALKGQKEVISSMQAGTYVAIKDLDNIRILIDKLEVEIESLLHNVD FAIAEEAVKIAIEEIKKKLGVFMKNVDDIGVQADICSRDIRRARTVVLQRIIKHPNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 376 | 376 | 2.0E-209 | ||
| Phobius | 1 | 219 | 219 | - | – | |
| PANTHER | 1 | 376 | 376 | 2.0E-209 | – | |
| Pfam | 41 | 371 | 331 | 1.5E-137 | ||
| TMHMM | 220 | 242 | 23 | - | – | |
| Phobius | 220 | 242 | 23 | - | – | |
| Phobius | 243 | 247 | 5 | - | – | |
| TMHMM | 247 | 266 | 20 | - | – | |
| Phobius | 248 | 266 | 19 | - | – | |
| Phobius | 267 | 377 | 111 | - | – | |
| Coils | 298 | 325 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0505800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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