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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0506100 |
| Transcript ID | LotjaGi3g1v0506100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; TAIR: AT5G66680.1 dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein; Swiss-Prot: sp|Q944K2|OST48_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; TrEMBL-Plants: tr|A0A0L9V7A3|A0A0L9V7A3_PHAAN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Found in the gene: LotjaGi3g1v0506100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92343997..92347750) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGAAGCTCTTGTTTGTGCTCCTCGCTCTCATTCCTCTTCTATGCAGCTCCTTCTCCCCTGACTCACCATCAGATCG CCGCATCCTCGTTCTTCTCGACGATTTCGCCCTCAAATCCTCCCACTCAATCTTCCTCAACTCTCTCCAATCTCGCGGCT TCGATCTCGATTTCAAGCTCGCCGATGACCCCAAAATCGCGCTCCAGAGATACGGCCAGTACCTCTACGATGGCTTGATT TTGTTTTGCCCCACCATCGAACGTGAGTTTTCCAATTTTCACACTGCACCCCAATTTTCATGAGATCTTAATTTCGGTTT TGTTTTTGTTTTTTAGAAATGGGTCTTGTTGAAGTTTCGTTCTTAGCTTATACATGTTCTGAAGTTTCGATTTTTAATTT TAGATGCATAAGGGTGTTTTGTGATGTGCAGGTTTTGGAGGATCCATTGATGCAGCTGCAGTTTTGGATTTTGTTGATTC CGGTCATGATTTGATAGTTGCTGCTGATAGTAATGCATCTGATTTAATCCGTGAAATCGCCACCGAGTGTGGAGTGGACT TTGATGAGGTGCTTACAGTTGAATTGATTTTTGTACATTGTGTTCTTTTAATTTCTCGTTTAGCTAGTTTTCTTTCTAGT GAGTTTGACATTTCCCAGTTATGTGTTTATACTTTGGTGGGGTGGTGTAATGTGTTTAGCTGTTATTGTTTTTGTTTTAT GTTGGGCACTGAAGACCTATCCTTTGCTTTTTTCTTTTTTAGGATCTTTCTGCTATGGTTGTAGATCATTCTGGATATGC AGTGTCTTCTACCGAAGGAGATCACACGTTGATTGCTAGTGATGATTTGATCAAGTCTGATGTGATATTGGGAAGCAAAA AAATTGAGGCAAGTTCATTGTTAATGTACTAGCTAACTGCATTAGGCTCAATTAACGCTTAAGGCATTAAAATTACTTTA TGTTACTGGCAAATTCTTATACACAATTTCTCATTACATGCAACAGGCTCCAGTACTTTTCCAAGGGATTGGACATTCTT TAAATCCTTCTAATAGCCTGGTAATATTTGGTAATCTTAGTTCAGTTGTCATCATTGGCCTTATTGCATTTATAAGTCTA CTTTAGTTTAGTTATACTTTTATATGTATTTCAATTTAGGTGTTGAAAGTTCTCTCAGCATCTCCTACAGCTTACTCTGC TAACCCCAAATCTAAGTTGACAAGTCCTCCATCACTAACTGGATCTTCTATCTCGTTAGTTTCAGTTGTACAGGTATGTC TATGTTTCATCATCCTGTTGTACTATTTCTATCCTCAATTTGCCCTTTTCTGCTTGACTTTTAATATGGATATGGCCTTG TTCTATTGCTTTTAAATATGTATGCAAATTATGCTTGCTAATTTTGTTTTTACTCCTTTAGACATTATCCATTTCCCTTT TGGAATAGTATATTTTTTAAATGCAAAAAAGTACACAAATATGTTGTCAAATATCTGGTGTTTCATCTCATTTTTTCATA ATACGTGATTTACACACATTTATTTTTCATTACATGCTGTTATGATTTTTTAAAATATTAATTCTGAACCTAAGTAGTAA CTCATCGCTTATTCTCTCCTTTTATGTTGCTTAGGCAAGAAATAATGCTCGGGTATTGATCTCTGGCTCATTGAGCTTGT TCAGCAACCGGTATGGAAGGCTTAGTTGTTAATCTAGGTTTTCTAATACTATGTATGCTCTGAAGCTCATTCGAACTTAT ACTAACTAACTTGGATTTATTTTATTTTGTTTGCAGATTTTTCAGGTCTGGTGTGCAAAAGGCTGGGAGTCCAACCAAGT GAGTGATTTGTTTATCCTGTTTAGTATCAGAACTTTGTTCACTGCTAGAGTGGTTGTCTTCTCTCTTAACACTGTCATAA TTCAGTTTTTATCAACTATTTTGCGTAATAATTCCATTAAACCCAACTTAATTGCCAATGTGTCTCTTTCCCTTTAGAAT CTAATTTTTAGGGAAACATACTTTCTGCTAAATGAAGTTTGGTATTTTCTTTTCTTTTGCGAGGAACAGACATGACAAGT CCGGTAATGAGCAGTTCTTGACTGAACTTAGCAAATGGGTTTTCCATGAAAGAGGTCATCTTAAGGTAAGGCAAATTCTT CCATCAATTCTATTGTCATTGTTCATATACTACTATTTGATATTTGACATCATCATTTACCATCACTATTATTAATTAAT TTGCTTTTACTTCATCTTTTGACATTAAGGCGGTGAATGTGCAACACCATAAAGCCGGTGAAGCTGATGAACCATCCATC TATAGGATCAACGATGATCTGGTAATTTAAATATTATTTCGATGATGATGTGCTTTAATTGAAACATTATTTTCGGTTGG CGCTCACTTCTCAAATCTCGTTAAAGGAATACTCTGTTGAAATTTATGAGTGGTCTGGGACAACTTGGGAACCCTATGTA GCCAATGATGTTCAAGTGCAATTTTACATGATGAGCCCCTATGTCTTGAAGACTTTATCAACTGACGGGAAGGTTGGTTT GAATTTCCTTTCGAACGTCTTAATTTCTTCTCTAATAAGCTCTTTACTGAAATTTGTTGGATTACGTTTTCTCTTTCAGG GTCGTTATTTCACATCATTTAAGGTTCCAGATGTCTATGGGGTTTTCCAATTCAAAGTTGAGTATGAAAGACTTGGATAC ACAAGCTTATCATTATCAAAGCAGGTAATTGCTGATCCTCAAGTATTTCATTTCAGTGTGGAGTCATTCTGCCTAGAGTA ATTGGAGAGACTCAGCCACTCTCCCTAAGCTCCAAACCCCAAATGATCCAAAAGATATCAATTCTAACCCTTAACTCTCT ATTTATAGGCTACATACGTCACACTAACCCACCCACTAATTAACCCGCTTCACTAATTGAGCGTGTCTAACACATTCCAC CTAAACACCCTTACAAAGTTCACGCACTTTTCTGTATCATTAAATTTACTTGTGTTTGGGCAGGAGCACATCTAAACTTT TCTTCACGTATCCATATGTAATGTAACAGCTTTACACACACTAACACTCAGCATCTTTATGGGTTTAGAATTTCCTGTTC CCAGTGACTATACTTTTAGCTGCTGGCCTTTATGATACATAGATATGCATTGTTCACTAGCTTTGTGCCTTTGTCTCTTA AACTGGTCATATTTCTGATTTAATTGCTGGATAAGAGTTTGTTACATGATCAAAGTTGAAAGCGAAACTTTGGGAACCTG TAGTTGTGGAACACTGAAACTTCTTTTTTATTTATTGGAATTATAGATTGCAATAAGCAAAATATTATAAGCGTTATTTA TGAATATTGTTGAACTTTCCATGTAGATTCCTGTTCGCCCCTTCAGACACAATGAATATGAGAGATTTATACCAACAGCT TATCCATATTATGGAGCATCATTTTCCATGGTAAGGATCTCTCTCTCTCTCTCTCTCACACACACACACACACACATTGG GTAAGTTGAAATATAATCTTTGATTTTCGACTTTGATACTCTGGATAAACCTTTATGTGCATCCCAAAAAGGTGATTAAT CTTTCCTAAAGGCAGGTCCAGTTCTCTATTTTCAGATTGTTTGAGAGCCACATTTAGAAAATTCTTCATGGCTTTTTGGT AATTTAACCTTTTGATTATGATGCAGATGGCAGGTTTCCTCATTTTCAGTGCTGTTCATCTATACAATAAATAG
CDS sequence (LotjaGi3g1v0506100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAGCTCTTGTTTGTGCTCCTCGCTCTCATTCCTCTTCTATGCAGCTCCTTCTCCCCTGACTCACCATCAGATCG CCGCATCCTCGTTCTTCTCGACGATTTCGCCCTCAAATCCTCCCACTCAATCTTCCTCAACTCTCTCCAATCTCGCGGCT TCGATCTCGATTTCAAGCTCGCCGATGACCCCAAAATCGCGCTCCAGAGATACGGCCAGTACCTCTACGATGGCTTGATT TTGTTTTGCCCCACCATCGAACGTTTTGGAGGATCCATTGATGCAGCTGCAGTTTTGGATTTTGTTGATTCCGGTCATGA TTTGATAGTTGCTGCTGATAGTAATGCATCTGATTTAATCCGTGAAATCGCCACCGAGTGTGGAGTGGACTTTGATGAGG ATCTTTCTGCTATGGTTGTAGATCATTCTGGATATGCAGTGTCTTCTACCGAAGGAGATCACACGTTGATTGCTAGTGAT GATTTGATCAAGTCTGATGCTCCAGTACTTTTCCAAGGGATTGGACATTCTTTAAATCCTTCTAATAGCCTGGTGTTGAA AGTTCTCTCAGCATCTCCTACAGCTTACTCTGCTAACCCCAAATCTAAGTTGACAAGTCCTCCATCACTAACTGGATCTT CTATCTCGTTAGTTTCAGTTGTACAGGCAAGAAATAATGCTCGGGTATTGATCTCTGGCTCATTGAGCTTGTTCAGCAAC CGATTTTTCAGGTCTGGTGTGCAAAAGGCTGGGAGTCCAACCAAACATGACAAGTCCGGTAATGAGCAGTTCTTGACTGA ACTTAGCAAATGGGTTTTCCATGAAAGAGGTCATCTTAAGGCGGTGAATGTGCAACACCATAAAGCCGGTGAAGCTGATG AACCATCCATCTATAGGATCAACGATGATCTGGAATACTCTGTTGAAATTTATGAGTGGTCTGGGACAACTTGGGAACCC TATGTAGCCAATGATGTTCAAGTGCAATTTTACATGATGAGCCCCTATGTCTTGAAGACTTTATCAACTGACGGGAAGGG TCGTTATTTCACATCATTTAAGGTTCCAGATGTCTATGGGGTTTTCCAATTCAAAGTTGAGTATGAAAGACTTGGATACA CAAGCTTATCATTATCAAAGCAGATTCCTGTTCGCCCCTTCAGACACAATGAATATGAGAGATTTATACCAACAGCTTAT CCATATTATGGAGCATCATTTTCCATGATGGCAGGTTTCCTCATTTTCAGTGCTGTTCATCTATACAATAAATAG
Protein sequence (LotjaGi3g1v0506100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKLLFVLLALIPLLCSSFSPDSPSDRRILVLLDDFALKSSHSIFLNSLQSRGFDLDFKLADDPKIALQRYGQYLYDGLI LFCPTIERFGGSIDAAAVLDFVDSGHDLIVAADSNASDLIREIATECGVDFDEDLSAMVVDHSGYAVSSTEGDHTLIASD DLIKSDAPVLFQGIGHSLNPSNSLVLKVLSASPTAYSANPKSKLTSPPSLTGSSISLVSVVQARNNARVLISGSLSLFSN RFFRSGVQKAGSPTKHDKSGNEQFLTELSKWVFHERGHLKAVNVQHHKAGEADEPSIYRINDDLEYSVEIYEWSGTTWEP YVANDVQVQFYMMSPYVLKTLSTDGKGRYFTSFKVPDVYGVFQFKVEYERLGYTSLSLSKQIPVRPFRHNEYERFIPTAY PYYGASFSMMAGFLIFSAVHLYNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| PANTHER | 4 | 424 | 421 | 8.1E-246 | ||
| PANTHER | 4 | 424 | 421 | 8.1E-246 | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| Phobius | 15 | 18 | 4 | - | – | |
| Phobius | 19 | 399 | 381 | - | – | |
| Pfam | 29 | 424 | 396 | 8.9E-129 | ||
| Phobius | 400 | 422 | 23 | - | – | |
| TMHMM | 400 | 422 | 23 | - | – | |
| Phobius | 423 | 424 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. | ||
| Biological process | Protein N-linked glycosylation via asparagine | The glycosylation of protein via the N4 atom of peptidyl-asparagine forming N4-glycosyl-L-asparagine; the most common form is N-acetylglucosaminyl asparagine; N-acetylgalactosaminyl asparagine and N4 glucosyl asparagine also occur. This modification typically occurs in extracellular peptides with an N-X-(ST) motif. Partial modification has been observed to occur with cysteine, rather than serine or threonine, in the third position; secondary structure features are important, and proline in the second or fourth positions inhibits modification. |
Expression pattern of LotjaGi3g1v0506100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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