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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0507200 |
| Transcript ID | LotjaGi3g1v0507200.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BURP domain protein RD22; TAIR: AT1G49320.1 unknown seed protein like 1; Swiss-Prot: sp|O65009|BNM2A_BRANA BURP domain-containing protein BNM2A; TrEMBL-Plants: tr|I3SBJ5|I3SBJ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0507200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92439179..92441437) extracted from Lotus japonicus Gifu genome v1.2.
AAGCCACTATGCTATACCAAACTACCTACACAAGGACACTACCCAGTTGCAACCATCATGCATATGTGATTGCTTGAATA GAGGTGAATAATAGAGAAACAAACTTGGAGACGTTTCATAATCAATCGTGGCCAGATGAGTTAAAAGCATACACAATTGA TCTTTAAACCTTCGTCATTCAGGCGCACATTTTTTTCACTATCATTTCTCTTATTTAGGTCTTTTCTATTCCTCTCTTTA TCGTCGAGGTGAAATTTAAGTGTGAAGAAATTATTTTCTTATTATAAACAAGGAAGTTTATAATTACAATATTCATTTGA AGTTAGAACATTGATATTGATAAGTGAAGTGTCGGTGGTTAAAACCCCACTAAAATATATGTTGATTGAGCGTCAACTGA AAAGAAATGTCTATTATTTAACATAACACAATTTAATTGATGGGAAAAATTACACAACGAATGAGACAAAATATTTCGGT TCCAATGTGTAAAATCCATTCCTGCTGTAAATTATGTATAATGTGTGGATTAAATATTGAATTATTCACTAAGTGATGTT GGATTCTAACATTATGTTATGTACTCTTACTCCTTATGGGCCACCAAGGTGTTCAATTGGGGTCTTTGTTCTTGTAGACA AAAGGTGGACAAAAGAGTTCAATCCCTGAGAGCAGAAACATGGGTGAAAAACTTGTATCTTGGATCCTCTTTCTTCATCT GCTAGTAATCATGGTACATTAATTAAGCGCTCAATTTCTTCTTGAATCTCTGTTTCTCTTTCAGGTTCTTTAATTCACAA CCAATTTGTTGAGAAATGGTATAATTTTCTTTCACTGTTGCAGAGTTCCTATGGTGGAAGCAGAGCAAGGGAATTGGCTG GAACAGAAAACAAACTCCAAGCAATCTCTGCTGATGATGAACATCAAACAGCACACACACACCATCATCATCATTCCCAT GTAGACCCTTCTGTGATGGTGTTCTTCACCTTAAAAGACTTGAAGGTTGGGAAAAGAATGCCAATTTATTTCCCCAAAAG AGACCCTGCAACTTCCCCTAAGTTCTGGCCAAGAGAAAAAGCAGATTCAGTTCCTTTCTCACTGAACCAACTACCAAACC TTCTCAATTTTTTCTCTTTCTCTCCAGATTCTCCTCCAGCCAAAGCCATGGAAGATACCCTGAAGGAATGCGAGAGCAAA CCCATCCAAGGTGAGGTAAAATTCTGTGCTACCTCTTTAGAATCCATGCTTGACTTCACTCATAGCATTCTTGGGTTGGA ATCTGATGATCTTCAAGTATTTGCTACTTCACACCTAACCAAATCCAGTGTCACTTTCCAGAACTACACTATCTTAGAAA ACATCATGAGAATCTCAGCTCCTAAGATGGTGGCTTGTCACACCATGCCTTACCCTTATGCTGTTTTTTACTGCCACAGC CAAGAGAGTGAGAACAGGGTATATAAGGTTTCACTTGTTGGTGATAATGGGGATAAGGTGGAAGCTATGGTTGTTTGTCA TTTGGATACCTCTCACTGGGGTTCTGGTCATGTTTCTTTTCAAATTCTTGGGGTTACACCTGGAAGCTCGTCTGTGTGCC ACTTTTTCCCAGCAGATAATCTCATTTGGGCTCCCAAATTGCAAGCTCATGGTCTTTCAACCATGTGATTTCAGCATCAA CATCCTAATGTCAAGTGAAATATTGTGTTTATCTCTATCTCTATAATTATTTTGAGAGTCTCATTTATTTAATACTTATG AAGGTAGAGATAGACACATAATTTAACATGACAGTGTCATGTAAAGTTTACACATGAGAGGATTGTGATCCGTGACTTTA ATACTATTATGCTGACATGTGTAACTCAGAGTTGTCTGGTTTGGGTTTTACTTTGATTGTTGAATAAGGTACCATCTATA GATCTAAAAAATATGTAAAATTTCTTGTGGGTGCATTTTAGTGTTTGCTTGTGATGTCTTGTATAAACAATAAGCTCACC ATAAAGGGGGCAAACTACAGGCTTGTATTTCAGAATACATGATTTCTCCTGCTAGCCTAATTGATGCTTATGTTATGTTA TCTTCAACAAATGGTGCTAACTTAAGGATTTCAATTGCTTTGAATCCGCCATGCATTTAATTTAGGATTTGGAGTTGCAA GGTGCTGAACAGCTTTTGACATGAATTTTGATCGAGTACGATGAAAACACAGGACAAAATATACTTACAAGACTCAAAGT TCATATTTGAATAATAAAG
CDS sequence (LotjaGi3g1v0507200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGAAAAACTTGTATCTTGGATCCTCTTTCTTCATCTGCTAGTAATCATGAGTTCCTATGGTGGAAGCAGAGCAAG GGAATTGGCTGGAACAGAAAACAAACTCCAAGCAATCTCTGCTGATGATGAACATCAAACAGCACACACACACCATCATC ATCATTCCCATGTAGACCCTTCTGTGATGGTGTTCTTCACCTTAAAAGACTTGAAGGTTGGGAAAAGAATGCCAATTTAT TTCCCCAAAAGAGACCCTGCAACTTCCCCTAAGTTCTGGCCAAGAGAAAAAGCAGATTCAGTTCCTTTCTCACTGAACCA ACTACCAAACCTTCTCAATTTTTTCTCTTTCTCTCCAGATTCTCCTCCAGCCAAAGCCATGGAAGATACCCTGAAGGAAT GCGAGAGCAAACCCATCCAAGGTGAGGTAAAATTCTGTGCTACCTCTTTAGAATCCATGCTTGACTTCACTCATAGCATT CTTGGGTTGGAATCTGATGATCTTCAAGTATTTGCTACTTCACACCTAACCAAATCCAGTGTCACTTTCCAGAACTACAC TATCTTAGAAAACATCATGAGAATCTCAGCTCCTAAGATGGTGGCTTGTCACACCATGCCTTACCCTTATGCTGTTTTTT ACTGCCACAGCCAAGAGAGTGAGAACAGGGTATATAAGGTTTCACTTGTTGGTGATAATGGGGATAAGGTGGAAGCTATG GTTGTTTGTCATTTGGATACCTCTCACTGGGGTTCTGGTCATGTTTCTTTTCAAATTCTTGGGGTTACACCTGGAAGCTC GTCTGTGTGCCACTTTTTCCCAGCAGATAATCTCATTTGGGCTCCCAAATTGCAAGCTCATGGTCTTTCAACCATGTGA
Protein sequence (LotjaGi3g1v0507200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEKLVSWILFLHLLVIMSSYGGSRARELAGTENKLQAISADDEHQTAHTHHHHHSHVDPSVMVFFTLKDLKVGKRMPIY FPKRDPATSPKFWPREKADSVPFSLNQLPNLLNFFSFSPDSPPAKAMEDTLKECESKPIQGEVKFCATSLESMLDFTHSI LGLESDDLQVFATSHLTKSSVTFQNYTILENIMRISAPKMVACHTMPYPYAVFYCHSQESENRVYKVSLVGDNGDKVEAM VVCHLDTSHWGSGHVSFQILGVTPGSSSVCHFFPADNLIWAPKLQAHGLSTM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 5 | 17 | 13 | - | – | |
| PANTHER | 8 | 282 | 275 | 5.6E-121 | – | |
| PANTHER | 8 | 282 | 275 | 5.6E-121 | – | |
| Phobius | 18 | 26 | 9 | - | – | |
| Phobius | 27 | 292 | 266 | - | – | |
| SMART | 63 | 283 | 221 | 6.9E-78 | ||
| Pfam | 64 | 281 | 218 | 1.1E-78 | ||
| ProSiteProfiles | 65 | 283 | 219 | 79.797 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0507200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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