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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0508300 |
| Transcript ID | LotjaGi3g1v0508300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial transcription termination factor family protein; TAIR: AT2G21710.1 Mitochondrial transcription termination factor family protein; Swiss-Prot: sp|F4IHL3|MTEF2_ARATH Transcription termination factor MTERF2, chloroplastic; TrEMBL-Plants: tr|G7JG65|G7JG65_MEDTR Transcription termination factor family protein; Found in the gene: LotjaGi3g1v0508300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92510334..92515118) extracted from Lotus japonicus Gifu genome v1.2.
CCAGAACAAACGAAATCTCGAAATGAAGAGTGGTCACTGTTAACTGCAAACTCTTATCCATTACCATCTCTTCCATTCAT AACCACCTTTAGCTTCCTTCAGCTAACAAGAAGAACCAGAGATGCTTCTTTCATGTCAAAAATTCTACAACCTTTACCTT CCATGCTCCTCCTCCTCCTCCAACTTCTCCAACCCATCATCCACCATTGTCAGTTGCCAAAACCAAAACGAGCACCACCC CATTATCCGCACACACAACTCCAAGTCCTCCTCCTTTCTCCTCCACAACCTTTCCCTCAAGGAAGACGACGATCACCCTT CACTCTCTGAGCTTCAAGACACAACACCCCATGAAGAAAAGGTGAAGCTCTTGGAACTTTCACTCGTTAGGAAGAGAACC CCTCGATTCCCTGGCTCAATCTATGCTCAATCTCCCAGTGACCCTGATGTGGGTTCTTCTCTTCCCCCTCTGCGTACTCT GTTTCGGTCAAGTGATGGTGAAGATAAGGGTGAGGAAGAGGAGATGATCATGCGCGCGCTTCAGATTCGTAGGAAGGTTA CAGAAGAGATTTTCAAGGAAGTGATGGAGAAAAAGGGGAAATTTGGAATCACGTATGTCAACAATTTGACTCGCAGGTTG GGTGGTTTCATTGATTTCATCATGATTGAAGCTGCTAATTTGAAAAGGTTGCCGGAGTATTCTCAATCCACCTTCAATCT ACGCGCTATAACCGTCATTGATGACTCTCAGGTTGTGTCACTTGTCAGGTATGAACTAGATTGATGTAAGTTTGTTGCCA TTTGAAGTTGTTTGTAAGCTGTTTGTTTAATTGTTTGTGTGAATTGTGAAACTGAATTGTGTGTTTGGTGATTTCATGTG TGCTAGTTGTTTCTTAATGGGGTTACATGTGTAGGATTTTAGCTTTAAATGATTGTGTTTGATTGTGTTTCTTCAATTCT CTAGATGGTTGAAGCATAATGCAATGTCATATCCTCAGATAGCAAAGCTCATTTTGATGTCAAGAGGAAACCTTGAGTTG ATAAGGAACCGTGTTGAGTGGTTGAAGTCGGTGCTTGTGAAAGGAGACTTTATCGGGGAAGCAATGTTGAAGGCTGGAGA TAATATTTTGCAGCGCAGCAATGAGGAGCTGGATGAGATTGTTGGGTATTTAGAATCTAATGGAGTCAGGAGGGATTGGA GGGGTTATGTCATGAGTAGATGTCCTCAATTGTTGTCTTACAGCATAGAAGAAGTGAAGGCACGTGTCCATTTCTATCGA GATATGGGTTTGGATGAGAAGGATTTTGGCACAATGGTTTTTGAATTTCCTAAAGCACTTGGTTTCTATACTCTGGAGGA AATGAACCAAAAGGTACATAAGTTTTTAACAAACTTTCAAGTCTCAAACTCAAAGTCATCTGGCAATATATCCTCATTTT CTTCTCCCATACTTTACCAGTTTATTCAGTTTTAGTAGCATCCAAGTCGAACATAAAGCAAGTTTGCCAGCTTAAAGATA TACTTTATTTTGATATGCATGCTGGTAATTGTTTCTGATATGTAGATGTACAATAAAGTGTGATTGTGCAATTATAAATT TCAGGTTGATTACTTAAAAGAATTTGGGCTTGAAAGTAAGGATGTTGGCAAATTGCTTGCAGTTAGACCACAACTGATGG CGTGCAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATCTCTACTATTATGGGATCACCCGAGATGGTATGAAGAGA ATGCTTACCCTTAAACCAATGGTCTTTTGTGCTGACTTGCAGATGACTATTGTGCCAAAGGTATGCAAACACCGTTTTTA TTTGTTTCCCTTATCAGTTGTGTGAGGCTTGTGGTTAAGGTGGAAGCTGGTACAATCTAGTAGTATTTCATACTGGGGTT CCATTTTATTATCATCATTTTCATTCCTCCAGCTCCTGAAATCTAGATGTTAATGTATTCGTAAATATGATGTTTAATAG ATTCAGAAACTAAAATTTCCGATGGTGTTTGTCTTGATTTCTGATGATAATTCTGACAATTTGTTGCTTATTTTATCATG AAGGTACAATTTTTTCAGGACATAGGGGTTCGAAATGAAGCAATTGGCAACATGCTTGTAAAATTTCCTACTCTACTCAC TTACAGCCTGCTCAAGAAGATTAGGCCAGTGGTATGTCCTTTACTTCACAGCTACAAAATTTGTTACTATTAAGTTATTT TTCCAAAGATTCACTGTTTTAATAGTGTTTTTTTTAATATTAAAAGAATAGTCTGCATAATAATGTTGAAGAAAACCGGC TACGATGTGATTGGGGCCCCTCAGTTTTACATTTCAATGCTGTGATAAAAGTATGTCAGTAACCAATCTCATACCTTATA CGCACATGAAACTATCTCCACAAATGATAAACTGGTGGGTTGCAAATGAGAACTCAAGCAGCAAGTGCTACTAACATGTT CTTCCTGTCACGTAGCAGTGATTTCTATTCAGACATAATAAATCACAATAATCATATATCAATAAACTGACTGATATAGA GACCTCATTTGTCTCATCTGCTGAAATATTCTTGTTGTATAGGTCATATTCTTGTTGACCAAGGCTGGAGTCAGGGACAA AGATATTGGCAAGGTTGTAGCTCTTGGACCTGAGCTCTTGGGATGCAGCATAGTACATAAGCTTGACGTAAATGTGAAAT ATTTTTTGTCTCTTGGCATACGCCTTCCGCAATTGGGTGAAATGATTGCGGATTTTCCAATGCTGCTCAGATACAATATA GATGTCCTTCGACCTAAGTATAGTTATTTGCGGAGAACCATGGTCCGGACTTTGCAAGATCTCATCGAGTTTCCAAGGTA TTGTAGAATGATATTTTGACCAGAGATAATTTGTAAAAATCTTGTTTGATTCTTAACATTTTTTATTCAATTGCATGGTT GCCTTCAACTATCCAACTCCCTTGCTGTTAACAGGTTTTTAAGCTATTCTCTTGATGGCCGAATTATCCCAAGGCACAAG GTTCTGGTGGAGAATCAGATTAATGTGAAGCTAAGATACATGTTGGCTTGCAGTGATGAAGAGTTTAACAAAATGGTCAA GACTATGGTTAGAAAACGCCAGAAATTTCAATCTTCTGTCATGGAGGAGGATGCTAATCATCCACAATCAGTTATTACCA GTGAGATTACAACACTCGAGACATGAAAAAAAACAATAAATGGCTCTGTGGATAGCCAAATGGTAATTCAGTTTTTGGTA AGTAAAACCATATACTATTTTTACTGTCTTCACCAGTCAGACAAGTATCAGAAAATCATGATTGTTCTTCTCAAAGATGG AGGTGCTAAATGATTCTGTAACAGATGACAAGAGCAGCAGAAACACCTTAGTGGAGGAAAAGGAACTCCTGTGTCTTAGT AAACAAAAAGAAGCTTGCAATTTATCATCCACGGCATCACTTGTAAAGATAGAACTGCTGTAGAGTGTGCTAATGAAACA TACCACTGCAGAATAGAGTTTTGGAGACCTGACCTATGTACTTCTTGCAATGATTTGAGGTATATGCTCACAACACACAA ATGTACTTCTACTACTTGTTACTATGTTCATTTTTGTCACATGTCGGTTTTGCTCTTTCTTCATTTTATCTTAATTTTTG ACCTGATTTTCCCCCAACAGGAGAGCAGGAAAACATTTGACTGTTGTGCAATTGAATAATCTGTCTGAACATGTAATCAT GGTCGCCATTCTTGCGCTAGAGAGGAGCTGAACACCAAACTTTTCCCTTATGGAATATCAAGACTCAAATTTATATACAA AACCCAGTTAAATCTATCTTGATCAGCATTTCTGTTAACAGCAGCATTGTTGCATGCTCTTTGAGGACAAGATATCATTC CAAGGCATAACAAATATTTCCAGCCCTTGAGATATTTTTTGTAAATATAAATCAGTTAGTATTCATAAATAACATGGTTG CAGTTATTATGTCTCGTTTTTTGTCTTTAAGCTATTTTATCAATCATGTATTGTTCCAATGCGTGTAATAATTCTGTGTC ACTAGCATTATGACAGTAGAAGTGACATTTTCCTATGAGTTGTGTAGAATCCTTGGACGAGTCCTTGATTTCACTGCCCG TACCAGTGAAATTGAAGACTGCCAACAAATGATTTTGGATAAGCCTTTTGAACTACTATCTATTATCGCTATCATAGTAA TCCTTACTCTATTCATTTGGTCAACTTTTAAGACTCTTGCACAAGTGAGTGCACGGAAAATCCAAGCAAGTCCTTATCGT AAGCGTGACTCACATTTTGTGTGACTTGCACAAATGTAGCCTAACAAAAGAAAACACTTGAATATGTATTGGATTGCCTC CCCACTTTTAACTAGTGTTTATTCAATTGGTGAAGATCAAAACACATCATTACAAGGCTTAGTTTTCTCCATAGTATGTG ATGTATAAATAGTATGTAAACCATTGCTCAGGTGAGGACCAAAGGGAAAAAAAAATGGAGGCTTATCACAATTTGACAGG TTTATCCTGTAGGTTATATCATAATTCAACAGTAAAAAAAATGCTATTACCACAAGGAACCTCTTTTTTTCTTGTTACAT ATCAAAATTCTTCATACAGAAATTGAACTAGTCCACTAGTTTATCTTAAGAGCCAAAAATTTATAAATGATAGACATGAA TGAATCATTTTAGTCAATTCCAAGACGACATATTGGATTTTTCTTCATAAGGCCAAGATCCACCT
CDS sequence (LotjaGi3g1v0508300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCTTTCATGTCAAAAATTCTACAACCTTTACCTTCCATGCTCCTCCTCCTCCTCCAACTTCTCCAACCCATCATC CACCATTGTCAGTTGCCAAAACCAAAACGAGCACCACCCCATTATCCGCACACACAACTCCAAGTCCTCCTCCTTTCTCC TCCACAACCTTTCCCTCAAGGAAGACGACGATCACCCTTCACTCTCTGAGCTTCAAGACACAACACCCCATGAAGAAAAG GTGAAGCTCTTGGAACTTTCACTCGTTAGGAAGAGAACCCCTCGATTCCCTGGCTCAATCTATGCTCAATCTCCCAGTGA CCCTGATGTGGGTTCTTCTCTTCCCCCTCTGCGTACTCTGTTTCGGTCAAGTGATGGTGAAGATAAGGGTGAGGAAGAGG AGATGATCATGCGCGCGCTTCAGATTCGTAGGAAGGTTACAGAAGAGATTTTCAAGGAAGTGATGGAGAAAAAGGGGAAA TTTGGAATCACGTATGTCAACAATTTGACTCGCAGGTTGGGTGGTTTCATTGATTTCATCATGATTGAAGCTGCTAATTT GAAAAGGTTGCCGGAGTATTCTCAATCCACCTTCAATCTACGCGCTATAACCGTCATTGATGACTCTCAGGTTGTGTCAC TTGTCAGATGGTTGAAGCATAATGCAATGTCATATCCTCAGATAGCAAAGCTCATTTTGATGTCAAGAGGAAACCTTGAG TTGATAAGGAACCGTGTTGAGTGGTTGAAGTCGGTGCTTGTGAAAGGAGACTTTATCGGGGAAGCAATGTTGAAGGCTGG AGATAATATTTTGCAGCGCAGCAATGAGGAGCTGGATGAGATTGTTGGGTATTTAGAATCTAATGGAGTCAGGAGGGATT GGAGGGGTTATGTCATGAGTAGATGTCCTCAATTGTTGTCTTACAGCATAGAAGAAGTGAAGGCACGTGTCCATTTCTAT CGAGATATGGGTTTGGATGAGAAGGATTTTGGCACAATGGTTTTTGAATTTCCTAAAGCACTTGGTTTCTATACTCTGGA GGAAATGAACCAAAAGGTTGATTACTTAAAAGAATTTGGGCTTGAAAGTAAGGATGTTGGCAAATTGCTTGCAGTTAGAC CACAACTGATGGCGTGCAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATCTCTACTATTATGGGATCACCCGAGAT GGTATGAAGAGAATGCTTACCCTTAAACCAATGGTCTTTTGTGCTGACTTGCAGATGACTATTGTGCCAAAGGTACAATT TTTTCAGGACATAGGGGTTCGAAATGAAGCAATTGGCAACATGCTTGTAAAATTTCCTACTCTACTCACTTACAGCCTGC TCAAGAAGATTAGGCCAGTGGTCATATTCTTGTTGACCAAGGCTGGAGTCAGGGACAAAGATATTGGCAAGGTTGTAGCT CTTGGACCTGAGCTCTTGGGATGCAGCATAGTACATAAGCTTGACGTAAATGTGAAATATTTTTTGTCTCTTGGCATACG CCTTCCGCAATTGGGTGAAATGATTGCGGATTTTCCAATGCTGCTCAGATACAATATAGATGTCCTTCGACCTAAGTATA GTTATTTGCGGAGAACCATGGTCCGGACTTTGCAAGATCTCATCGAGTTTCCAAGGTTTTTAAGCTATTCTCTTGATGGC CGAATTATCCCAAGGCACAAGGTTCTGGTGGAGAATCAGATTAATGTGAAGCTAAGATACATGTTGGCTTGCAGTGATGA AGAGTTTAACAAAATGGTCAAGACTATGGTTAGAAAACGCCAGAAATTTCAATCTTCTGTCATGGAGGAGGATGCTAATC ATCCACAATCAGTTATTACCAGTGAGATTACAACACTCGAGACATGA
Protein sequence (LotjaGi3g1v0508300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLSCQKFYNLYLPCSSSSSNFSNPSSTIVSCQNQNEHHPIIRTHNSKSSSFLLHNLSLKEDDDHPSLSELQDTTPHEEK VKLLELSLVRKRTPRFPGSIYAQSPSDPDVGSSLPPLRTLFRSSDGEDKGEEEEMIMRALQIRRKVTEEIFKEVMEKKGK FGITYVNNLTRRLGGFIDFIMIEAANLKRLPEYSQSTFNLRAITVIDDSQVVSLVRWLKHNAMSYPQIAKLILMSRGNLE LIRNRVEWLKSVLVKGDFIGEAMLKAGDNILQRSNEELDEIVGYLESNGVRRDWRGYVMSRCPQLLSYSIEEVKARVHFY RDMGLDEKDFGTMVFEFPKALGFYTLEEMNQKVDYLKEFGLESKDVGKLLAVRPQLMACSIEEQWKPLVKYLYYYGITRD GMKRMLTLKPMVFCADLQMTIVPKVQFFQDIGVRNEAIGNMLVKFPTLLTYSLLKKIRPVVIFLLTKAGVRDKDIGKVVA LGPELLGCSIVHKLDVNVKYFLSLGIRLPQLGEMIADFPMLLRYNIDVLRPKYSYLRRTMVRTLQDLIEFPRFLSYSLDG RIIPRHKVLVENQINVKLRYMLACSDEEFNKMVKTMVRKRQKFQSSVMEEDANHPQSVITSEITTLET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 32 | 32 | 5.0 | – | |
| PANTHER | 37 | 613 | 577 | 2.5E-238 | – | |
| PANTHER | 37 | 613 | 577 | 2.5E-238 | – | |
| MobiDBLite | 97 | 129 | 33 | - | – | |
| Pfam | 224 | 357 | 134 | 1.4E-13 | ||
| SMART | 261 | 291 | 31 | 3100.0 | ||
| Pfam | 283 | 589 | 307 | 4.0E-65 | ||
| SMART | 296 | 326 | 31 | 3.7E-4 | ||
| SMART | 331 | 362 | 32 | 2.9 | ||
| SMART | 367 | 398 | 32 | 0.33 | ||
| Gene3D | 370 | 606 | 237 | 2.3E-46 | ||
| SMART | 403 | 434 | 32 | 0.035 | ||
| SMART | 439 | 471 | 33 | 8.5E-5 | ||
| SMART | 476 | 507 | 32 | 0.16 | ||
| SMART | 512 | 542 | 31 | 0.058 | ||
| SMART | 544 | 575 | 32 | 0.032 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Double-stranded DNA binding | Interacting selectively and non-covalently with double-stranded DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0508300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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