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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0508900 |
Transcript ID | LotjaGi3g1v0508900.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Transcription factor RADIALIS; TAIR: AT1G75250.1 RAD-like 6; Swiss-Prot: sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6; TrEMBL-Plants: tr|K7LSY9|K7LSY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0508900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92596031..92598132) extracted from Lotus japonicus Gifu genome v1.2.
GTTCATTTGAAACTGATTCCCTCTGGCTCTATTCAGTACCAAATAAAATCCTCTTGTCCTGCTTCATTTCGTGGTTCCAA AGAATACAGGTCACTAGATCTTCCAACTTTTGGCAATTCAGATTCCAAAAACCAGCTACAACCCACTATCCTCACCAATA TATAAGCACATCACAAATGCATTTTCTTACACAACCTACCTTTCAACCAAAAAAAATACTCATTGTTCTTTTTCCCTTAC CATCAATCTTTCACATTCTTCTATAACTAGCAACCTAAAAAATTACACTCTCTTTTAGGCTCTTACCATCCAACAAATTA GCTATTTAGAGAGTAAATTAAGATTAGTCATGGCCTCAAGCTCTCTCAGCAAACAAAAGCCTTGTGACTCAGCTTGGACA CCAAAACAAAACAAGCTGTTTGAAAAGGCGCTTGCGAAATATGACAAGGACACCCCGGACCGGTGGCAGAATGTAGCCAA AGCAGTAGGTGGAAAATCGGTGGATGAAGTGAAGAAACACTATGAGATCCTCCTGGAGGATCTCAGACACATAGAGTCTG GCCATGTTCCCATTCCCAATTACAAGTCCACGCCAAGAAGCATCAATGTGGATGAAGAAGAGAGGTAATTGCAATGCTTC CAAAGAAAACTGATATTTCCTTTCTATCTTTCCATCTATATACCATTAACTAACTACTTTTTTCACAATCCCTTCTAAAT TCTCATCTTTCTCACCCTTGCATTGTTCCATTCATGGTCCTTTTTTAATAGCTATCTATACTTTTGTATAAACTCCAATG TGAGCACCAAGAAATGGTTAGTTCATGTGGTACATGTCTAGTTCCCCTTAAGCAATATGTCGGATTCGAGTTCTATAAAT GGACAAAAAAAAACCTCTGGGAATCTAGTTTCACCAAGATGTGAATGTTTTGGTTTTGAACATGATTGACTTATGTGAAG AATATATGTGCTTCACCCCCCCCAAAAAAAAAAAGTCCAATGTGAGCCAACAATATTGCAAAACTGCATTTGATATGAAT TTTCATGTTAAGGTAGAAAAGAAGTTGCTGCTAAAAACTTCTGCAGCATTATTGTGAAACTAGATAGTATATAGAAAGAA CATCAGTCTAGTAACTAAAACTAATAGTATTTTTTGTCAAATTTGAATATTTACATGTGTAGCTTTACTAGTTCTGGAGG TTAAATTGCATGAGCCAGGGGAAAATTATATGGTAGTAAAACACCATTTTCTTGTAACCAAGAGACATGCACGTTTCTTG TTATGCACCACAAATTTCAATTTCAAATCTCTAAACTCAAAAATTGTCTACTTACCTATTCAATGTCAATCTAACAAATG CTAAATTAGGTGTAACTGCTTTCTCTTTAAACAATTTTATGTCAAACTGTTTTTGAAATTTGTGCAGGGCCGGCCCAAGG GCCAAGCCACCCAAGCAAGGGCTTTAGGCCTCCAAATTTTGCTTATATTACCAAATAAAAAAAGGCCTCCAAATTTTTCT TACTAAGTAAAAAAGGCCTCAAAAATTTTAATAAATAAAGATTTCTTTAGATAAAAATGCCTCACTTTTAAAGTTTGCTT TAGGCTTCATTTAGTATTGGGCCGGCCCTGAATTTGTGGCAAAGAGTGTTGTATAATCACTGGTGTAAGTCATGCTACAA ATATCTTGTTACACTGCAGAATTACTATAATCCCTCATCAGACATTGAAATATTCAATCTGAAGTCATTATTCAAAATTC TGTTACAACTTACAACAACATTGCTTATATACACATGTGTTCATTTTTATTTTATTTTTTGTTGCTCCAGGCTTCTGAAG TATCTTAAGCTGAATTGATTCGAAGCAATACCTGTGCTATCATCAACTATCGGCAGCAGCATCTATGTGGTTTTCCATGA TGAATCTGCAGAAATATCTTCCTCTCTTTATGAGTCTCTCTTTATTCCATTTCCTGTCATTGTAATTTAGGTCATTTCAA ATTTTGAATTAATAATCTTATTCTTGAAATAGTATCAGTATCAAGTTCTTAACCACAATATTCTGCCGTTTAAACTTTTT TTTTACACCCTTTAATGTCAAG
CDS sequence (LotjaGi3g1v0508900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCAAGCTCTCTCAGCAAACAAAAGCCTTGTGACTCAGCTTGGACACCAAAACAAAACAAGCTGTTTGAAAAGGC GCTTGCGAAATATGACAAGGACACCCCGGACCGGTGGCAGAATGTAGCCAAAGCAGTAGGTGGAAAATCGGTGGATGAAG TGAAGAAACACTATGAGATCCTCCTGGAGGATCTCAGACACATAGAGTCTGGCCATGTTCCCATTCCCAATTACAAGTCC ACGCCAAGAAGCATCAATGTGGATGAAGAAGAGAGGCTTCTGAAGTATCTTAAGCTGAATTGA
Protein sequence (LotjaGi3g1v0508900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSLSKQKPCDSAWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSVDEVKKHYEILLEDLRHIESGHVPIPNYKS TPRSINVDEEERLLKYLKLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 96 | 96 | 4.5E-46 | – | |
PANTHER | 1 | 96 | 96 | 4.5E-46 | – | |
Gene3D | 9 | 75 | 67 | 2.8E-23 | – | |
ProSiteProfiles | 11 | 66 | 56 | 10.488 | ||
SMART | 12 | 64 | 53 | 6.1E-8 | ||
Pfam | 14 | 58 | 45 | 6.4E-7 | ||
SUPERFAMILY | 14 | 70 | 57 | 3.66E-13 | ||
CDD | 15 | 62 | 48 | 8.50888E-7 | ||
Coils | 87 | 100 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0508900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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