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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0511400 |
| Transcript ID | LotjaGi3g1v0511400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT1G76390.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43; TrEMBL-Plants: tr|K7LSX6|K7LSX6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0511400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92867307..92872161) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAGCTGAAGGGTAAGGAAGAAAAAGCTTGGAAATGGACCTGGAAAGAAAGATTAAAGGGTCCAAGCAAGTGGGAGCA AATGGCCAAGCTCATCCAATAAATAAAGACAGAGAAGAGAAAGATACCATGTGGAACAAAGTAGGAGAATATACAATACA ATCTTATATTTATTGGGTCACAGTCATAGCCATCTTAAAATGACTTGTTCTTACTATATTCATTCCAAACTTCAAACCCC TTGTTTTACCCTTCAGGTTCAAGGCCAACAGTAAGAAGAAGAACAAGTGGGGTGGTCTTATTCTTTGCTTGTTGGTTTGG ATTTCTTGAAAAATTCTCATCTTTAAACATGTGGGGCCTGAGATTCTAACTAAGCTCAAGAGTAGAATAATCAGTTTCCT TTGTCTGATCAGCTTTGCAATCTCTCTGCAGGTACCATTCACTTTCCCTGAGTTTCTTTCTTGTACTGCTTGTGTGATTT TCTTTCTGTTTCTATTCACTTCTTATCAGTTAACTTAAATAACTATCTGTTGTTTCCCAGCTATAGTTTATTTATTCTCT TCTTTAACTGATTATTCTTTTTTTTCTCCAAAAATACAGTTTTCATGAATGATTAACTAATTATGATGGAAAAGCGAGAC TTTTCTGAATTCCTATCAGAGCTAATAGTGCTAAGCAATGAGGTTGCTTCTTTTGCCAAGAATCCTGAAATTGAGATAGA TGCTTTTGATGAGTTTGCTATGCTCGTTGAGAAATTCGCACCTATCTTCAATGATTTGAGGGACAAAAGCACAATCATGG GCAAGCCAGCTATTAGAAAATCGTTGGAATCAATTGAGAATGAGCTTAACCGTGCTAAAGCTTTGATCAGAAGTCCCTAT TTGAAAGAGCCTGTTAAACAAATTGAGGACATAACTCGTGATCTTGGTCGATCATTTGGCCTGCTTATTGTGGCTAGCCT TGAAGTGTCCACAGATTTTAGAGAAAAGATTGGTGTATTGCAAAAGCAGTTGATGAATGCAAGATTTGGTGGATATAATA CTAGTCTAACTTCAAGTCCAGTGTCAAATTTTGTCAGGGATGTGAAGGTGGAAGGGGAAATAGAAGAGGAAATAGTTAAT GTCATTGTCACCCTTGAGGATGTTGTGCTGCAACTTAAGAATGGTAGTGCTGAAGAATTTGCTGTTGTACTTATGAGACT AAAGAAGTTAATCAGGGATGGACAACTGGATAGTGGTTTAATTAATGAGAATTTTATTGTTTGTGTTCTTTTTAATCGTC TAAGTTCATGTAAGGCAGAAGATAGGCTCACAGTCATTCAATTGCTACGAAGTATCGCCTTGGGAAATGATGAGTCAAAG GTAAAATCCAGTGAGATTGTCCCATTTGGAAGAGCTTATTTGATCTTATTTTAAAACATAAGTGCTTATGAAAGTGTTTG TGAGAGTTTGTGTAAATAGCTTATGACCTACTTATAAGCTATTTTGAGCTTATTTTCATAAGCTACTTATATTAGCTTAT GAATAAGTGCTTATGCCTACCTACGACCTATTTTCAACTTATTTCAACAAGCTTCTCAAATTAAGTTATTGAATAAGTAC TTATGTGATAAGCGCTTATTGTCATAAAGGACTTAATTAATCTGTTTACCCAAGCGCACCGTGAATTCAAAGCACTTCTA GTTTTTAGTTATCTTATGTTCTAAAGTACTTCTGTGCAGGAGAAGATGGCAAATATTGAGTTTTTATCAGCATTGGTGAA GTCTCTAATAAGGGGTGAAGAAGAGAGGAGGGAAACAGTGGGACTGTTGCTAGAACTATCTGACCTTGCCGCAGTTAGAC GTCAGATTGGAAGAATTAAGGGGTGCATTCTTATGTTAACTTCTATCCTGAATGGAATTGACCCTGTTGCTTCACATGAT GCAGCAAAGTTATTGGATATATTATCCAGTAATTCTCAAAATGCACTTCATATGGCTGCAGCTGGTTACTTTAGGCCACT AGTGCATTATTTGGAGAAAGGTAGTGCTAAATTTTGCTTCACTGAAATTGCTAAATTTCTTTGTTATTTTATATGGAGCA TGCATTGATCATATTAATACAAGTGATTTAAGAACTATAATTAGTTGAGGATGAAAATCATCATATCTCTGGATTTTATA TAATAATCTGATAGTCTTGGCAAACCTTATAATGTAATCTGATAGCATGAGTTGGTGTTTCCCTCTATCTAAATGTGACA TGCATTTACTGATAACAAATTTAGTTTGTATGATGTCCTGTATTTGGGTCTATGTTAACGATTTTAATTATATAAATCAA ACAAATTGCAACTAGCTGGTTCAATAGTGAGAATGTCACGGAAAACTTTTGTAGCATCTTCAAATGTGAAGGTAAATTAA ATGCTATGTTTACACAATAGTTGCAATGAGACTTCAAAACTAATCCAGCCAAAAAATAAGGATCTTCAACCAACTACTTC AAACCTAATACCTGTTTTGCAAAATTTGTAGGCATTAGATGTTGCTAAAGTGAGCCTTTTGATTCAACTCACTGTAATTA AGTAAAAAAACCCTTTTGATTCAACTCAATGAATTAAGGTGTGGGGTCAATATGAATTTAAAATTTAGGACTGAGCTGTA ATTGCAATAAACTGATTAATCAAGATTGCATTGATCAACAGAAATGGCACCCTAAAGGCCAAACTTGTTCTTCAAATAAA GCAGTGGAGCAATTACTTTCATCTTTACTTAGTTACATGTGTAGTTTATAGATGAGCCCATAATAGGAGTTGAAGTAAAT TTCTCTGCATTCCCTTAACTTGAAAACTTCAATTCAGACCATGTTATCGCAGGATCTGACATGAACAAAATCCTTATGGC AACATCACTTTCTAGGTTGGTTCTCACTGATCACTGCAAACTTTCCCTTGGACAAGAGGGGGCAGTTGAATCCCTTGTCA AAATGTTTAACTCAGGGAAGCTTGAGTCCAAGTTATCTGCTCTAAATGCATTGCAAAACCTTTCGAGCTTGACCGAAAAT GTGCAACGTCTGGTCAAAACTGGAATTGTAGGATATCTGCTGCAACTCCTTTTCTCTGTAACTTCTGTGCTCATGACTTT GCGGGAGCCTGCATCAGCTATGCTCGCAAGAATTGCTCAGTCAGAATCCTTTCTTGTAAACCAAGACGCGGCGCAGCAAA TGCTTTCACTTTTGAGTCTTAACAACAGCAAGGTAATTCAAGGTCATCTATTAGAAGCTCTAGACAGCATTGCGTCCCAT CCTGGTGCTTCTAAAGTGAGAAGAAAAATGAAGGAAAAAGGTGCCCTTCAGCTAATTTTACCCCTTCTGAAGGAAACTAA AATAAGGAGCAAGGCCTTGAGTTTGCTATATACTCTCTCCAAAGATCTAACAGAAGAGTTTAGTGAACATCTTGATCAAA CTCATCTTCTCAACATTGTTAACATTGTCATATCAACAACATCAGATAATGAAAAGGCTAATGCTGTTGGCATACTGAGT AATCTTCCGGTTAACGATAAGAAAGTGACAGATATGCTAAAGAGAGCAAATTTGTTGCCAATGTTGGTACACATTATGGA TTCAAGCACTGGAAGTAACTCACTCACAAGAAGTATCATAGCTGAGAGTATTGCAGGTATTGTAATCCGGTTCACGTGTG CCTCTGACAAGAAACTACAACTTCTTTCAGCAGAGCAAGGGGTGATTCCTTTGCTTGTAAAAGTTCTCTCAGGTGGTTCA ACAATCACAAAATTTAGAGCTGCTACCTCTCTGGCTCAACTATCACAAAATTCTCTACCTCTCAGGAGGTCTTGGAAGTC AAGGTGGTTGTGTGCTTCTCACTCAGTTAATAATGCATATTGTGAAGTTCATGATGGCTATTGCTTTGTGAACAGCACTT TTTGTCTGATTAAAGCAGGTGCTGTTTCTCCACTTATCCAAATATTGGTAGATAAGGATGAGGAAGCAGTGGAAGCTTCT CTGAGTGCCCTTTCAACTCTCTTGCAGGATGAAATTTGGGAAGGAGGTGTGAAATGCATAGCTGAATTGTCAGGAGTAGA CCCTATTGTGAAAATTTTAGAAACTGGTAATTTGAAGGTTCAAGAAAAAGCACTGTGGATGTTGGAGAGAATATTCAGGG TTGATGGGTACAGAGTAAAATATGGTGAATCTGCTGAGGCAGTTCTTATTGATCTGGCACAGAAGAATGATTCTGGATTG AAGCCAACAGTTGCAAAAGTTTTGGCATTGTTGGAGCTCCTGCAAGCTCAATCTAGTTATTTCTGAATCAAAAACCTTGT GATCAAGTGATTTTGTTAAGTTCCATTCATTTATATTTTCTTTTTTTTTTTTTGAAGACAAAAGTAACCAATTATATTCA AATCAATGAGAATCTACATCAGGAGCATCAGCAGCTAAGCTGAGTAAAATATCCACAGGTGGGTCATCCCACCAAGTACA ATCTTTATATGTAAAACTATTTGCTGCTAAAGTATTGGCCACTCTATTAGTGCCTCGAGGTTCAAACATAAACTGAAAAA AAGAAAAATTCCTGGCTAGACCCAAACAATCTTGTAACAACACAAACAGTACAGGGAAACTCTGAGGCTCTGCATACGCA TCCACCAGCTGCTTGCAATCTGATGAGAAAATCACATCATCCAACCCCCAATCCACTACCAAATTCAAACTCCACCTGAG ACACAAAGCTTCAGCCAATAAAGGGTCCATCCTATAAGGGACATAATGAACCGCAGAAGCCTGAAACTTGCCCCTTTCAT CTCTTATCACCAGACCAAAACCAGTCCCTTCCTTCCCAGCCCACCCAGCATCAAT
CDS sequence (LotjaGi3g1v0511400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAAAAGCGAGACTTTTCTGAATTCCTATCAGAGCTAATAGTGCTAAGCAATGAGGTTGCTTCTTTTGCCAAGAA TCCTGAAATTGAGATAGATGCTTTTGATGAGTTTGCTATGCTCGTTGAGAAATTCGCACCTATCTTCAATGATTTGAGGG ACAAAAGCACAATCATGGGCAAGCCAGCTATTAGAAAATCGTTGGAATCAATTGAGAATGAGCTTAACCGTGCTAAAGCT TTGATCAGAAGTCCCTATTTGAAAGAGCCTGTTAAACAAATTGAGGACATAACTCGTGATCTTGGTCGATCATTTGGCCT GCTTATTGTGGCTAGCCTTGAAGTGTCCACAGATTTTAGAGAAAAGATTGGTGTATTGCAAAAGCAGTTGATGAATGCAA GATTTGGTGGATATAATACTAGTCTAACTTCAAGTCCAGTGTCAAATTTTGTCAGGGATGTGAAGGTGGAAGGGGAAATA GAAGAGGAAATAGTTAATGTCATTGTCACCCTTGAGGATGTTGTGCTGCAACTTAAGAATGGTAGTGCTGAAGAATTTGC TGTTGTACTTATGAGACTAAAGAAGTTAATCAGGGATGGACAACTGGATAGTGGTTTAATTAATGAGAATTTTATTGTTT GTGTTCTTTTTAATCGTCTAAGTTCATGTAAGGCAGAAGATAGGCTCACAGTCATTCAATTGCTACGAAGTATCGCCTTG GGAAATGATGAGTCAAAGGAGAAGATGGCAAATATTGAGTTTTTATCAGCATTGGTGAAGTCTCTAATAAGGGGTGAAGA AGAGAGGAGGGAAACAGTGGGACTGTTGCTAGAACTATCTGACCTTGCCGCAGTTAGACGTCAGATTGGAAGAATTAAGG GGTGCATTCTTATGTTAACTTCTATCCTGAATGGAATTGACCCTGTTGCTTCACATGATGCAGCAAAGTTATTGGATATA TTATCCAGTAATTCTCAAAATGCACTTCATATGGCTGCAGCTGGTTACTTTAGGCCACTAGTGCATTATTTGGAGAAAGA CCATGTTATCGCAGGATCTGACATGAACAAAATCCTTATGGCAACATCACTTTCTAGGTTGGTTCTCACTGATCACTGCA AACTTTCCCTTGGACAAGAGGGGGCAGTTGAATCCCTTGTCAAAATGTTTAACTCAGGGAAGCTTGAGTCCAAGTTATCT GCTCTAAATGCATTGCAAAACCTTTCGAGCTTGACCGAAAATGTGCAACGTCTGGTCAAAACTGGAATTGTAGGATATCT GCTGCAACTCCTTTTCTCTGTAACTTCTGTGCTCATGACTTTGCGGGAGCCTGCATCAGCTATGCTCGCAAGAATTGCTC AGTCAGAATCCTTTCTTGTAAACCAAGACGCGGCGCAGCAAATGCTTTCACTTTTGAGTCTTAACAACAGCAAGGTAATT CAAGGTCATCTATTAGAAGCTCTAGACAGCATTGCGTCCCATCCTGGTGCTTCTAAAGTGAGAAGAAAAATGAAGGAAAA AGGTGCCCTTCAGCTAATTTTACCCCTTCTGAAGGAAACTAAAATAAGGAGCAAGGCCTTGAGTTTGCTATATACTCTCT CCAAAGATCTAACAGAAGAGTTTAGTGAACATCTTGATCAAACTCATCTTCTCAACATTGTTAACATTGTCATATCAACA ACATCAGATAATGAAAAGGCTAATGCTGTTGGCATACTGAGTAATCTTCCGGTTAACGATAAGAAAGTGACAGATATGCT AAAGAGAGCAAATTTGTTGCCAATGTTGGTACACATTATGGATTCAAGCACTGGAAGTAACTCACTCACAAGAAGTATCA TAGCTGAGAGTATTGCAGGTATTGTAATCCGGTTCACGTGTGCCTCTGACAAGAAACTACAACTTCTTTCAGCAGAGCAA GGGGTGATTCCTTTGCTTGTAAAAGTTCTCTCAGGTGGTTCAACAATCACAAAATTTAGAGCTGCTACCTCTCTGGCTCA ACTATCACAAAATTCTCTACCTCTCAGGAGGTCTTGGAAGTCAAGGTGGTTGTGTGCTTCTCACTCAGTTAATAATGCAT ATTGTGAAGTTCATGATGGCTATTGCTTTGTGAACAGCACTTTTTGTCTGATTAAAGCAGGTGCTGTTTCTCCACTTATC CAAATATTGGTAGATAAGGATGAGGAAGCAGTGGAAGCTTCTCTGAGTGCCCTTTCAACTCTCTTGCAGGATGAAATTTG GGAAGGAGGTGTGAAATGCATAGCTGAATTGTCAGGAGTAGACCCTATTGTGAAAATTTTAGAAACTGGTAATTTGAAGG TTCAAGAAAAAGCACTGTGGATGTTGGAGAGAATATTCAGGGTTGATGGGTACAGAGTAAAATATGGTGAATCTGCTGAG GCAGTTCTTATTGATCTGGCACAGAAGAATGATTCTGGATTGAAGCCAACAGTTGCAAAAGTTTTGGCATTGTTGGAGCT CCTGCAAGCTCAATCTAGTTATTTCTGA
Protein sequence (LotjaGi3g1v0511400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEKRDFSEFLSELIVLSNEVASFAKNPEIEIDAFDEFAMLVEKFAPIFNDLRDKSTIMGKPAIRKSLESIENELNRAKA LIRSPYLKEPVKQIEDITRDLGRSFGLLIVASLEVSTDFREKIGVLQKQLMNARFGGYNTSLTSSPVSNFVRDVKVEGEI EEEIVNVIVTLEDVVLQLKNGSAEEFAVVLMRLKKLIRDGQLDSGLINENFIVCVLFNRLSSCKAEDRLTVIQLLRSIAL GNDESKEKMANIEFLSALVKSLIRGEEERRETVGLLLELSDLAAVRRQIGRIKGCILMLTSILNGIDPVASHDAAKLLDI LSSNSQNALHMAAAGYFRPLVHYLEKDHVIAGSDMNKILMATSLSRLVLTDHCKLSLGQEGAVESLVKMFNSGKLESKLS ALNALQNLSSLTENVQRLVKTGIVGYLLQLLFSVTSVLMTLREPASAMLARIAQSESFLVNQDAAQQMLSLLSLNNSKVI QGHLLEALDSIASHPGASKVRRKMKEKGALQLILPLLKETKIRSKALSLLYTLSKDLTEEFSEHLDQTHLLNIVNIVIST TSDNEKANAVGILSNLPVNDKKVTDMLKRANLLPMLVHIMDSSTGSNSLTRSIIAESIAGIVIRFTCASDKKLQLLSAEQ GVIPLLVKVLSGGSTITKFRAATSLAQLSQNSLPLRRSWKSRWLCASHSVNNAYCEVHDGYCFVNSTFCLIKAGAVSPLI QILVDKDEEAVEASLSALSTLLQDEIWEGGVKCIAELSGVDPIVKILETGNLKVQEKALWMLERIFRVDGYRVKYGESAE AVLIDLAQKNDSGLKPTVAKVLALLELLQAQSSYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 422 | 422 | - | – | |
| PANTHER | 2 | 835 | 834 | 0.0 | – | |
| PANTHER | 2 | 835 | 834 | 0.0 | – | |
| Gene3D | 170 | 353 | 184 | 1.2E-8 | ||
| SUPERFAMILY | 171 | 435 | 265 | 2.3E-16 | ||
| SMART | 242 | 281 | 40 | 190.0 | ||
| Gene3D | 354 | 547 | 194 | 1.5E-16 | ||
| SUPERFAMILY | 356 | 788 | 433 | 2.25E-39 | ||
| SMART | 370 | 410 | 41 | 0.68 | ||
| ProSiteProfiles | 381 | 423 | 43 | 9.292 | ||
| SMART | 411 | 454 | 44 | 180.0 | ||
| Phobius | 423 | 441 | 19 | - | – | |
| Phobius | 442 | 835 | 394 | - | – | |
| SMART | 497 | 535 | 39 | 5.5 | ||
| Gene3D | 548 | 679 | 132 | 1.7E-8 | ||
| SMART | 630 | 670 | 41 | 45.0 | ||
| Gene3D | 703 | 833 | 131 | 1.1E-12 | ||
| SMART | 703 | 743 | 41 | 1.7 | ||
| SMART | 747 | 787 | 41 | 26.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0511400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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