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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0512200 |
| Transcript ID | LotjaGi3g1v0512200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | cytochrome C oxidase subunit; TAIR: AT2G38780.1 cytochrome C oxidase subunit; Swiss-Prot: sp|P18940|NU5M_CHICK NADH-ubiquinone oxidoreductase chain 5; TrEMBL-Plants: tr|Q70I33|Q70I33_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0512200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92928612..92933816) extracted from Lotus japonicus Gifu genome v1.2.
GGAGGGAGTATCATATCATATGGGTCATTCTCCAATTTCTCATCTAAGATTAAAGTGTTAAGATAAACATGAGTGGGTGG TGATGGGTGATAGATATGAGAATGAGAGACAGACACAAGTGTGCATTTGTTATTTGCTTATCCAACAACTAACCAGAATC CAAATGCATATGTTCATGTTCAATCCTTCATGTTCCAGCTCCACGCTTCTCTGAGGCAAACACAGTGACATAATAGTTCA TTTGATTCTCACCCACATGGCTTCTTTACGGTCTCCATGGTTGCGTTGCATTGTATCCCCCAAGAACGGTGCTATTTTCC CCTCCACAAACGTGTCCGTGTGCATGTGCTTGCCTTCTTCAACAACAACGTTCAAGCTCTGTTGTGCTCTGAGCTCTAAC AACGCGGAGTCTTCTGAACCCACCTCGCCGGAAGCTCAAACGGGTCCGGTTGATCCCGTGAAGCTAGCGTTTAACAAGGC AAAAACATACAAAGAAGAATCGGGAAAATCAAACCCTGGTTCTGGAATTGAGCAAAGCGATGCTAATGGTGAAAATTCGG TTAATCAGGGTGATGCTGTTGATGGTAGGCAAAAGGATTTGCCTGTTTCTTTGAAGATTGCTATGGAGAAGGCCAAAAAG TATAAGCAGAATAAAGGGGTTGCTATTGCTGAAACAACTCAAGGTAATATAATACTTATTCAATATAAAATGGTTTAGGT GTTTTCAGGTAAATTTTAGATAATTAAGTGATTTAGAGTGAGTTCCAATGTTTGGTCATTTCTACTTCCTGTTATTTTAA CTGAGAAGTTGAAATCAAACTCAAGCTAGGGAGTAGGGGGGCATTATCCTCGTTTCAAGTCCATGGACTATTGTGCAAGC AAGTGTTAGTGCATGTTTGGAAATCCTATTACAATTGATTTTGAAGCCAAAATCAATTATGGGGAGTTAGCTTATAATAA AAGAAAAGATGGTTTATATGTTTTATTTTGTGTTGATGTTTTTTGAAGTAATTATATGCGTGGTTATTGTAAAATTGTTT TCCATAGAATTGATTTTTGTAAAATTGATTATGGTAAAAGTGAGTTCGAATAAGTTGTAAGTGAAGTGATTTATGTTTAG ACATGTTTGTGAATAAAAAAAGTAATATCTTAATGGTAATGTTGTGAAATTGTAAAGTTCCACAATTGATTATGTCCAGT GTCCACCACAAAAACTGCTCTCTCTAGCTTCTCCGTAGAATTGATTATGAGACCGAAATCAATTCTTCGAGACGATTCTC AAACACCTATGTATATCCATAAGCGATTTTGCTAAATGAGATTTGATTCTAACTTCTAAGGTTTACCAACGGGGAACCAA ACACAGGTATAACAGCAATGCAACAAATTGTTAGGTACAAAACATGGAAATTTCGAGTATATAATGACAAGCTATGTGTT TTTACTATGCAGTTTGTGCTGAAATGGGTATTTAAATTCATTTTTAGGACTGCAGGGAGGGAGGGAGAGGACTTTGGAAA ATTCTGTTGGTGAGAAAGAGGGAAAACTATCGGTTTCAAAGATTGATTTTGTGGGGCTTGACTTTGGGGATAAGAAGAAG ACTAGGGGATTGCCACCTGGACTGGTTCCTGTCACAGACTCCTTCTCTGACGGAGACTTGACTGAGGTGGAGTTTATTGT TGGAGATGCAACCAAGTTTGATGCTGTAACAGATCCAGAACCTGAACAGACTAAGGAAGAAGAGTCAGAGTTATACAAGC CAACAGTTTCTACATGGGGTGTCTTTCCTAGACCTGGCAATATTTCAAAAACAGTATGTTTTTTTAGTATTTGTCAATTG ATTTTTATTCTTGCCAACTTGTTCATGTTTTCCCTTTCTCATTTGCCCCACTTTTTACTGGTTTATTTATTGGGTCCACA TTCAGTTTGGAGGTGGAAGAGTTATACGTCCTGGAGAGGTTCTAGAGACTGATGAAGAAAAAGCTATGAGAGAAGTGCGC ACGAAGCAGCTACTTGCTGCTTACAAGAAGAGAACTGGATTAGATATTGATCCAAAGCTAAAATCTGAGTGTGAGGAGGT GAGCATTTACTGAAATTGATAGATTGACATTCAAGTTAATTATCGTTCTTCCTAAGAAGCTCCAAGTGCATCAAGTGGTC TACTGGTCATAAAAATTGACTACATTTTAAGCCGTTTAACGGTTTTAATCTCAAAAACAATTATATTTGCAAGCAAAAAT ATTGTAAATTTTAAAATGATAATTCTGTGCAAACAGGCCTTTTTTTAATTCCTTTTTGCTTGGCCATATTAAAAACCAAG CAACTTCAAAATACCAATTTGGAATAATATGTGCCTTTAATGTTTGAATTGACTTAATCTTTATGGTCACACTAATAGTA TTGGACTCCAAATAGAACTCATATTCTCCTCGTTTTGTATTAATGGTTTGCGCCTTCAGCTATTCACTTTTAAGTTTTAA TTGATTATAGCAATAAAGCCTTTGGTACAGAAAATAGATTACGATTGAAGTATTCCTAGGCTTGGGGGAATGGGGGATAT GTGATGAAAATGAGGATTAGGTAAAGGTAGGATATCTTAATTTCCAAATGCTTTAAGTTTCTTTACAAGGTTGTCTTTCT GATTTAATTTGATATTTGCCTCTTCTTTTATTGTGTATCTGTTGCTTAATTATCCTGACAGAATATAATTTCTAAATTGC ATATACTTTTTGTAGGCATTGAAGGATGGTGACTTGTTAATGAATGCAGGGAAGCTGAAGGAAGCATTGCCCTACTATGA GAAGGTTATGGACAAAATAACCTTCAAGGTAAACATTTTAATTTAAACTACTCACCTACAAGTTGTCGCGGGGAAAATGC ACTTATATCTTTCTAGTAAGAAGCTAGCATCATCTCTCTGAATGTCATTTCCAACTAAAGTTTATTGAGATGAACCCTTT TTCTTCAAACCAAAAGGGCATATTGATTGACCTTTTTTTTTACTTTTTAAGTTTTATTGAGCATTACATTGTGTCTAGTT TTTGAACTTTTAAATGTAATGACATACTCTAGCAGGGAAACTAGGAAATATATATTTGGAGGAATATATACATGAGATTG AACATGTCTGTGCAGAGTGAGCTCCATGGATTAGCTGCTTTGCAGTGGTCAATTTGTCTAGACTCCCTCAATAGGTATGT TCAGAAACTTCAGGCAATGCCTGAACTTATAATGGGACCTACCAGATTGTGTTCTACAAGAATTGATGACTCCTTAATAT GCATATGCAATGTTTGCTACTTCAGTTCTGTGTGACATGATCACGTTGGCAACTGTGTTTTGATTCAATGCTAAGTATAG TGCCTATATTTAACTTGAAAGGATAAGGTTATGTTTGGATTGGTGTTTGGGAGCTTCTAACCCCCGTTTGGAACTCTCAG TTGTGATTTGCATATTTGATTTTTTTCTTTTCTAAACGTTACTCTGCTTCCAAAGCTACATTTTACTTCCAGAGTTCATT TCAACACTACTTGGGTCATTAGTGCCCTCCCCTGGCTAAAATTGCCCAGGCTTTGTTGAAGTTCCGTCTGGAAACAGGGA TCTTTGTCATTGCAGAGGTCAAATTTGGAACCATTCATTGTCAATATTTTTTGCCTGATCCAAGGGACAATATATAAGTA GTTCATAGTTAATTAAATCCTTTACCAATGAATAAGATGAGCTTTCACTAATTTAACCACTCCTCAAGTGGTAGAGTGAA ATTGCAGTTTTGGCAGATATCCTTGTCACATCAGCATGCTGAAATTTAGCTAGTTTTGATCATGAAACCTTGTTTCCTTT TCAAAATGAATTTGTCATAGTTTTATCAATGTGTCTGTAGACCGTAGTTTAGTAAATGTTTTAGGTTCTAAGGTAGTGTT TGGCTTGTGCACATAACAGAACGGAACTCATTCTCTTTGGTTTGGGTCATTGGGTGGAACCAAAATATGCCATTTGTCCT ACTTTATGTCTTGTTTTGTTCTGCTTCTAATATAACACCAAACATAGAACAGAACCTGTATTGATGTATTGATATGTCAC TTTGCTATGACCGTAACTTAGTCCAGAAACAACTATAGCCTCTTGACCTGAAAGTGGAGGGGCTTAGCATTAATTGGTTT GTTCTTTCTGTTCTTAAGATTTCCAAACATATTTTGATGATTGACAGGTCCAATGAGGCTCAAAGCATGTATGAGAAGCT CAAATCTCACCCAAATGCTAAAGTAAGCAAGAAAGCAAGACAGTTCTCGTACAGCTTTCAGGTAGTTTCTGGTAGGAAAA TGGTCTGCAAGATAACATGCTACGTGCACTTGAAAAAAAAAGTGTCTGTCTTTGTCTAGTATTTAAAACACTCTAATCAA TGATATTTCCTATGTATTAGGATTATTAGCAATCTTCCATGTTTATAATTTTTTTTCACACATCTCAAGCCACATATTTG TTTTATATTTACATTCATTGTGGGTTATGAACTCTGCCAGGCCATGGAAATGATGAAATTTACAGCAGGATCATCATCAT ATTCAAAGAACACATACTACCAGAATTATTTTGATGCATTTATAGAGAATAAATCCAACTACCCCTTACAAGATGGTGTG GCTCAAGAAAATGCAATGAATCTGCAGGTTTTGCCGTATATTATTTTCATGGTTTCTCCTATTTTTGTCATACTACTTAT TGCTCTGCAGAAAAGAATATAATTATAAATTTCTCTCTTTTGTTTGCACATAGTCCACATGCAGACCGTTTCTTTGTTTT ATAGTGTCAATGATCAAGTCCTTTAAACAGAAGATAACTCTTCCGAGTTGGACAACTTCATATAATTGTATAGGTGTATT ATAGGATAGGATTGAATTGTAAATATAAGAATTATGTATTTTTTTTAGCAATACTTTACCAAGCTAAAAAAAACATTTAA TTTCTCATTTAGAAGAGACTTCAAAGGATTTCATTTCAAAGGAGAATTTCATGGCTTATCCCATGCTTTTTTGCATTGTC TCATCGCCTGCTCACTTGTGTCGTCGTGCCATCACTGGCGGAGCTGTTTTCTCATCCACGTCGGTGTGTTGGCTGGATCT CACTGGCACCGTTGGGTCACAATCTTACCGGTGTCACGATCTCACTAACGTACTCACCTATTTTTTTCAGCAGTACTTTA CCAAG
CDS sequence (LotjaGi3g1v0512200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTTACGGTCTCCATGGTTGCGTTGCATTGTATCCCCCAAGAACGGTGCTATTTTCCCCTCCACAAACGTGTC CGTGTGCATGTGCTTGCCTTCTTCAACAACAACGTTCAAGCTCTGTTGTGCTCTGAGCTCTAACAACGCGGAGTCTTCTG AACCCACCTCGCCGGAAGCTCAAACGGGTCCGGTTGATCCCGTGAAGCTAGCGTTTAACAAGGCAAAAACATACAAAGAA GAATCGGGAAAATCAAACCCTGGTTCTGGAATTGAGCAAAGCGATGCTAATGGTGAAAATTCGGTTAATCAGGGTGATGC TGTTGATGGTAGGCAAAAGGATTTGCCTGTTTCTTTGAAGATTGCTATGGAGAAGGCCAAAAAGTATAAGCAGAATAAAG GGGTTGCTATTGCTGAAACAACTCAAGGACTGCAGGGAGGGAGGGAGAGGACTTTGGAAAATTCTGTTGGTGAGAAAGAG GGAAAACTATCGGTTTCAAAGATTGATTTTGTGGGGCTTGACTTTGGGGATAAGAAGAAGACTAGGGGATTGCCACCTGG ACTGGTTCCTGTCACAGACTCCTTCTCTGACGGAGACTTGACTGAGGTGGAGTTTATTGTTGGAGATGCAACCAAGTTTG ATGCTGTAACAGATCCAGAACCTGAACAGACTAAGGAAGAAGAGTCAGAGTTATACAAGCCAACAGTTTCTACATGGGGT GTCTTTCCTAGACCTGGCAATATTTCAAAAACATTTGGAGGTGGAAGAGTTATACGTCCTGGAGAGGTTCTAGAGACTGA TGAAGAAAAAGCTATGAGAGAAGTGCGCACGAAGCAGCTACTTGCTGCTTACAAGAAGAGAACTGGATTAGATATTGATC CAAAGCTAAAATCTGAGTGTGAGGAGGCATTGAAGGATGGTGACTTGTTAATGAATGCAGGGAAGCTGAAGGAAGCATTG CCCTACTATGAGAAGGTTATGGACAAAATAACCTTCAAGAGTGAGCTCCATGGATTAGCTGCTTTGCAGTGGTCAATTTG TCTAGACTCCCTCAATAGGTCCAATGAGGCTCAAAGCATGTATGAGAAGCTCAAATCTCACCCAAATGCTAAAGTAAGCA AGAAAGCAAGACAGTTCTCGTACAGCTTTCAGGCCATGGAAATGATGAAATTTACAGCAGGATCATCATCATATTCAAAG AACACATACTACCAGAATTATTTTGATGCATTTATAGAGAATAAATCCAACTACCCCTTACAAGATGGTGTGGCTCAAGA AAATGCAATGAATCTGCAGGTTTTGCCGTATATTATTTTCATGGTTTCTCCTATTTTTGTCATACTACTTATTGCTCTGC AGAAAAGAATATAA
Protein sequence (LotjaGi3g1v0512200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLRSPWLRCIVSPKNGAIFPSTNVSVCMCLPSSTTTFKLCCALSSNNAESSEPTSPEAQTGPVDPVKLAFNKAKTYKE ESGKSNPGSGIEQSDANGENSVNQGDAVDGRQKDLPVSLKIAMEKAKKYKQNKGVAIAETTQGLQGGRERTLENSVGEKE GKLSVSKIDFVGLDFGDKKKTRGLPPGLVPVTDSFSDGDLTEVEFIVGDATKFDAVTDPEPEQTKEEESELYKPTVSTWG VFPRPGNISKTFGGGRVIRPGEVLETDEEKAMREVRTKQLLAAYKKRTGLDIDPKLKSECEEALKDGDLLMNAGKLKEAL PYYEKVMDKITFKSELHGLAALQWSICLDSLNRSNEAQSMYEKLKSHPNAKVSKKARQFSYSFQAMEMMKFTAGSSSYSK NTYYQNYFDAFIENKSNYPLQDGVAQENAMNLQVLPYIIFMVSPIFVILLIALQKRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 433 | 433 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 52 | 52 | - | – | |
| PANTHER | 1 | 456 | 456 | 5.5E-179 | – | |
| MobiDBLite | 78 | 113 | 36 | - | – | |
| MobiDBLite | 82 | 107 | 26 | - | – | |
| Gene3D | 300 | 383 | 84 | 4.8E-5 | ||
| Phobius | 434 | 453 | 20 | - | – | |
| TMHMM | 434 | 453 | 20 | - | – | |
| Phobius | 454 | 457 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0512200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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