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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0516000 |
| Transcript ID | LotjaGi3g1v0516000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor TFIID subunit 14b; TAIR: AT5G45600.1 YEATS family protein; Swiss-Prot: sp|Q9FH40|TA14B_ARATH Transcription initiation factor TFIID subunit 14b; TrEMBL-Plants: tr|V7ADV7|V7ADV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0516000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93333908..93336990) extracted from Lotus japonicus Gifu genome v1.2.
GATTGGCCCGTTGGAAAAAAGTGCCCATTTCAGTATTGAACCAAAAACAAAAAATCACAAACGACGTCGTACGCGCATGA ACAATGCTGTCTGTGTCTGATTTTGACAAACCCTTAGAACTTGTTACCCAGCTTCAGCTTGAGATGCGATCTCGTGAATT GATATGACAAACAGCTCATCTTCGAAAAAACATGATCAGGATCAGCCTGAGTCAAGTAGTCCTACCCTGAAATCTCAGCG AACCAAAATGCCCAAATCCGAAGACACCGATAAGAAGGTAATTAACATTGTTTCGATTCAGATTCAGATTCGGATGAAAA TTAAATCCCCATTGGTTGTTTTGTATAATCATTTCTGGGTTTTTTGTGTAGAACTCGGGTAAGAAACTCAAAGATGTAGA GATAAGTGTTCCAATTGTGTATGGGAACATAGCATTCTGGCTTGGCAAGAAGGCTAGTGAGTAAGTATCTCAAATGGTTA TAGCTTACTGTGTTGGAGGTTCAATTCAATGTATAGCTTGCTTATAGTCACTGAAATGGAAAAATGAAAAGTAACAATTG ACCATGTTTATGTTAAATACAAGGTATCAATCACATAAGTGGACTGTGTATGTTCGAGGAGCGACCAATGAGGACCTTGG GGCGATAGTAAAACGTTGCGTTTTTCAGCTGCATTCTAGTTTTAATAACCCCACACGGGTTGTGGAGTCACCGCCTTTTG AGTTGTCTGAGACAGGATGGGGGGAGTTTGAGATTGCCATAACATTGTATTTCCACAGTGATGTTTGCGACAAGCCTTTG AACTTGTGAGTTTTTTGCTACTGCTTTTTATTTTGTAGCTGGTTGCTGCTTTTTGTGTGGAGTTCATTGGGCCTTTTGTT GATTCTCTGATTCTTGATTCAGTGTAGAAGTTTAGATTATGCTAATAGTGGCTAGAATCTTAACTAACATTTTAGTATGT TTCAACATTGACGTATCGGCAACAATGTGATAATGCATCTGATTCACTGCAGGAGTGCAGCTCTACCCATTGCTAAGTTT AGTTCAATACATATAGCGATTAGTAATTTGGCTTCAGTGCTTCAAGTTTTTATTAATATGATAAGCTTGGATGACTATAC AGTTTACATCTACCTTCATAAGTTTGTTTAGAGTATGCAGCTATATGGTTCAAGTGCTTGAATATTATCTAATGATATAC TAGATGACAATAGAAGTGTTATTCACTGTTATTAATCATGCAGATTGCAAACTTGGTGAAGGTCAAAATCATTTCTGAAT CATGTTTTTTATTGAAGTGTAATGTCTATGCAGATATCATCACTTGAAATTGTATCCTGAGGATGAAAACAGTTCCATGA CCACTAAGAAGCCTGTTGTTGTGGAACTTTATGATGAGATAGTCTTCCCTGATCCTTCTGAGGCTTTCTTATCCCGTGTG CAAGGTCATCCAGCTGTGAACTTGCCAAGATTACCTGCTGGGGTCACCTTGCCTCCTCCCAGTATGTTACTTAGCAATCA CCATTGTCATCTACAACTTTCTTCTTTCTATGTCTGATTTGAATGAAATCGTATAATATAAATGCAGTACCTGTTGAGGA TGCAAGTAAAAGAAGGAAAGGTGATACCAAAGATCATTCCTTAACCCAATGGTTCACGAATTTCTCAGAAGCAGATGAGC TCTTGCAGCTTGCTGCAGCTCGCCAGCAGGTATATATGACATGATAGTTAATATTAAGAGTATGTAATATTTGTGGAAGT CAAAGTAATTTTTTGATGCCTTGATGGTATATTTATGTGAATATTAAGGAACTATAGAGTATAGACTACTTGCATACACT CTACTAATGGATAAATCTGTATCATGCATGTGGAACTGTTTTGCTGTTTACAAGCACCACCTTTGCCATCTAGATTATTG ATGTTCATGTTAGTCTCTTTGTTGAGAAATGTGATAACCAATAGGATCAAGTTCTATTGTATATAAAAAATGATTCAATT CAACTTCTAAAGGAAGAGGGAAGCCAGTGAAGGGGGAGGGTGAGAGAGAGAGAAACCAGAAAAAAATGACAGATAAGATG TTTTTTTATGCAGATTAACATTATTTCTAGTTTTTTCTAATGGCTATCTTGCACAACCACCCCTGCTTGTTCCTAATGAA TTGATTTGACTATGGCACACGTTACCATTATATTGTAGGTTCTCTTTGTTCTAATGATTTTCTATGCGGGGCCTGAATAT TCAGAATGTATATCATAATGAAATTTTAAAATAATAATTAGCTCAATGCTAAATCGTGTAAAGTAGACATCATCTTACAC CAGTATAAGACATTTAGAATTCTTTCACTGTTAACAGCTTTTGGTGCTTGAATCTTATTTTCTTGGTGCTTTTGGTGTGA ATGTTTTAGATTTTCACCTCAACCTTGTAAGAAAACTGTGTTCCTAGCTGATAGTTGTTTTGTCCTCCTATTTCTTATTA GGTTCAAGCTCACATTGCTAAACTCAGACGACAGATAAGCTTGATAGATGGACAGCAACAGCAGTTTAAATCTACTCCTG AGCAGTAGTTGTACAATTTGGATGTTTCATGATTTATTTATTTTGAAAAAAATATAGGTAGAAGGCAGTAGAATGAGTTA ATTATATGCTCCTCAACTAATTTCTTTAGCTGTATTGTAATTTATTTCATTTTTTTTTGTCTGCGGTGTTGAAATTGTTT AACTAGTTTGTCTTTGGCCATAAGCATAAGCAGCCAAATATAAATGATTTAATCATAAAAGATTAACAAATGTAGTCTTT TGTTTTATTTGTTGATTATTCCCTTTGTTGATTATAATATACATTGAATATAACTGTTATAAATAGATATATCTCATGTG GATAGAGACTAAGTGTCTGTTTGGATACCTATTCTTCTTCTAAGGCGTTGATCTCCTGACTTTTGATTTAGTCAATTTAA ATTTATCTCATTGTTCTTGGTGTACACTTTTTTGTTTTTCTTGATGTACACTTTTAGAGCATGCAATGCTCAAAAAATGG ACAACGAAATGGATGAAATTAGTGGTTGAGGTAGTAAGTAGTA
CDS sequence (LotjaGi3g1v0516000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAACAGCTCATCTTCGAAAAAACATGATCAGGATCAGCCTGAGTCAAGTAGTCCTACCCTGAAATCTCAGCGAAC CAAAATGCCCAAATCCGAAGACACCGATAAGAAGAACTCGGGTAAGAAACTCAAAGATGTAGAGATAAGTGTTCCAATTG TGTATGGGAACATAGCATTCTGGCTTGGCAAGAAGGCTAGTGAGTATCAATCACATAAGTGGACTGTGTATGTTCGAGGA GCGACCAATGAGGACCTTGGGGCGATAGTAAAACGTTGCGTTTTTCAGCTGCATTCTAGTTTTAATAACCCCACACGGGT TGTGGAGTCACCGCCTTTTGAGTTGTCTGAGACAGGATGGGGGGAGTTTGAGATTGCCATAACATTGTATTTCCACAGTG ATGTTTGCGACAAGCCTTTGAACTTATATCATCACTTGAAATTGTATCCTGAGGATGAAAACAGTTCCATGACCACTAAG AAGCCTGTTGTTGTGGAACTTTATGATGAGATAGTCTTCCCTGATCCTTCTGAGGCTTTCTTATCCCGTGTGCAAGGTCA TCCAGCTGTGAACTTGCCAAGATTACCTGCTGGGGTCACCTTGCCTCCTCCCATACCTGTTGAGGATGCAAGTAAAAGAA GGAAAGGTGATACCAAAGATCATTCCTTAACCCAATGGTTCACGAATTTCTCAGAAGCAGATGAGCTCTTGCAGCTTGCT GCAGCTCGCCAGCAGGTTCAAGCTCACATTGCTAAACTCAGACGACAGATAAGCTTGATAGATGGACAGCAACAGCAGTT TAAATCTACTCCTGAGCAGTAG
Protein sequence (LotjaGi3g1v0516000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTNSSSSKKHDQDQPESSSPTLKSQRTKMPKSEDTDKKNSGKKLKDVEISVPIVYGNIAFWLGKKASEYQSHKWTVYVRG ATNEDLGAIVKRCVFQLHSSFNNPTRVVESPPFELSETGWGEFEIAITLYFHSDVCDKPLNLYHHLKLYPEDENSSMTTK KPVVVELYDEIVFPDPSEAFLSRVQGHPAVNLPRLPAGVTLPPPIPVEDASKRRKGDTKDHSLTQWFTNFSEADELLQLA AARQQVQAHIAKLRRQISLIDGQQQQFKSTPEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 42 | 42 | - | – | |
| PANTHER | 9 | 269 | 261 | 1.9E-134 | – | |
| PANTHER | 9 | 269 | 261 | 1.9E-134 | ||
| MobiDBLite | 27 | 42 | 16 | - | – | |
| Gene3D | 44 | 198 | 155 | 1.0E-52 | ||
| CDD | 49 | 180 | 132 | 6.58511E-86 | – | |
| ProSiteProfiles | 50 | 154 | 105 | 23.327 | ||
| Pfam | 72 | 151 | 80 | 1.3E-31 | ||
| MobiDBLite | 195 | 218 | 24 | - | – | |
| Coils | 236 | 256 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0516000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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