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LotjaGi3g1v0520200.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0520200
Transcript ID	LotjaGi3g1v0520200.1
Lotus japonicus genome version	Gifu v1.2
Description	Heavy metal-associated domain containing protein, expressed; TAIR: AT4G38580.1 farnesylated protein 6; Swiss-Prot: sp\|Q9SZN7\|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26; TrEMBL-Plants: tr\|I3S0N9\|I3S0N9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0520200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:93674296..93675355) extracted from Lotus japonicus Gifu genome v1.2.

TTATTAACCGACATCGGTGAGTATTTCATTCGGATAATTACTCAATTCAACCATATATATTTAACCCACCGACCTGTCAG ACTCACTCTGTCACATACTTCCTCGCTATAAATAAACGTAGCAACAAACAAACCAACCAACCAACCAAGTAACCAACCAT TCAACTGCATAATTTCATTCATACACAACAACATGGGTGCCCTGGATCACATCTCTGAACTCTTTGACTGTTCTTCCTTT GGAAATTCCAAATACAAGAAGCGCAAGCAATTCCAGGTACATATAATTTTAATTCAACTATTATATTGTTTGATTAATAC TACATAGTAGCATGTAACTATGCATGATTGTATAAATGAAACTGGTATATATTATTAATTGTTTGATTGGAATATTGATT GATTTTTGATGAATGATCAGACGGTGGAGGTGAAAGTGAAGATGGACTGCGAAGGATGCGAGAGGAAAGTGAAGAAATCG GTGGAGGGGATGAAGGGTGTCACCCAAGTGGAGGTGGAACGAAAAGCAAGCAAGGTTACAGTTACAGGCTATGTGGAACC TTCTAAGGTGGTGGCGCGTATTGCTCACCGCACAGGTAAGAGGGCGGAGCTGTGGCCATATGTGCCGTACGATGTGGTGG CGCATCCCTATGCTCCCGGTGTTTATGACAAGAAAGCGCCATCTGGTTATGTTAGGAATTCGGAGTATGATCCCAACGTG TCCCACCTCGCTCGTGCTAGCTCCACCGAAGTTAGATATACAACCGCTTTCAGCGACGAAAACCCCACCGCTTGTGCTGT TATGTAATTTCGCTGTTTCATTGCTTTTTTTTTTTTTCTTGTATCACATCGCAAAGGGTGGAGAAAAGAAGATGAAAATA GTGAAAGTATAATAGGATTAGGTGATAAACATGTTATGTTTGGGTTTTTATTTTTTGCTAGGGAAATATATTATCTTTGA TTGCAAATTATTTTTATTTTGATTAATTTGAGTTATTGCATGTTTTTGAGTTGCTTCATTTAAAAAAAAAATTCAGTTGT ACTACCTTTCACAATAAACT

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0520200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTGCCCTGGATCACATCTCTGAACTCTTTGACTGTTCTTCCTTTGGAAATTCCAAATACAAGAAGCGCAAGCAATT CCAGACGGTGGAGGTGAAAGTGAAGATGGACTGCGAAGGATGCGAGAGGAAAGTGAAGAAATCGGTGGAGGGGATGAAGG GTGTCACCCAAGTGGAGGTGGAACGAAAAGCAAGCAAGGTTACAGTTACAGGCTATGTGGAACCTTCTAAGGTGGTGGCG CGTATTGCTCACCGCACAGGTAAGAGGGCGGAGCTGTGGCCATATGTGCCGTACGATGTGGTGGCGCATCCCTATGCTCC CGGTGTTTATGACAAGAAAGCGCCATCTGGTTATGTTAGGAATTCGGAGTATGATCCCAACGTGTCCCACCTCGCTCGTG CTAGCTCCACCGAAGTTAGATATACAACCGCTTTCAGCGACGAAAACCCCACCGCTTGTGCTGTTATGTAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0520200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGALDHISELFDCSSFGNSKYKKRKQFQTVEVKVKMDCEGCERKVKKSVEGMKGVTQVEVERKASKVTVTGYVEPSKVVA RIAHRTGKRAELWPYVPYDVVAHPYAPGVYDKKAPSGYVRNSEYDPNVSHLARASSTEVRYTTAFSDENPTACAVM

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR22814 View details on PTHR22814 Search for proteins/transripts with this domain View external data on PTHR22814	1	156	156	2.3E-96	–
PANTHER	PTHR22814:SF313 View details on PTHR22814:SF313 Search for proteins/transripts with this domain View external data on PTHR22814:SF313	1	156	156	2.3E-96	–
Gene3D	G3DSA:3.30.70.100 View details on G3DSA:3.30.70.100 Search for proteins/transripts with this domain View external data on G3DSA:3.30.70.100	16	94	79	2.4E-17	–
SUPERFAMILY	SSF55008 View details on SSF55008 Search for proteins/transripts with this domain View external data on SSF55008	27	94	68	1.31E-14	IPR036163 Show description in modal box View details on IPR036163 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00371 View details on cd00371 Search for proteins/transripts with this domain View external data on cd00371	31	91	61	8.62855E-14	IPR006121 Show description in modal box View details on IPR006121 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00403 View details on PF00403 Search for proteins/transripts with this domain View external data on PF00403	32	87	56	2.2E-13	IPR006121 Show description in modal box View details on IPR006121 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50846 View details on PS50846 Search for proteins/transripts with this domain View external data on PS50846	36	92	57	9.499	IPR006121 Show description in modal box View details on IPR006121 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0030001 View details of GO:0030001 AmiGO InterPro QuickGO	Biological process	Metal ion transport	The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.	Subterm of View details of GO:0006812
GO:0046872 View details of GO:0046872 AmiGO InterPro QuickGO	Molecular function	Metal ion binding	Interacting selectively and non-covalently with any metal ion.	Subterm of View details of GO:0043169

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0520200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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