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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0523100 |
| Transcript ID | LotjaGi3g1v0523100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Armadillo repeat only protein; TAIR: AT4G34940.1 armadillo repeat only 1; Swiss-Prot: sp|Q9FWY7|IMPA6_ARATH Importin subunit alpha-6; TrEMBL-Plants: tr|A0A1J7HYL2|A0A1J7HYL2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0523100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94019368..94021965) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAACCGTTACACCCGTCATTCCCTTCACCTTCACTCATCACCACCGCATCCCCCTGCCACCACTACCACCACCACC ACCACCATTCCTACCTCCAATGTAGAATGCAGAAGACACAACCCCACCTCCCTAAGCCTCAGCCAGATCCTCCTTGGCAT TATTCCCCTTGATTTCAATTTCCAACATCAAATAGCACATTAAAAGACACACAAAACAAACAGACAAACAACCTTTGATT ACAAACAAAACACTATAACCTTCAAACCATTTCTTTGTTTTGGAGGTTGAAAAACTAAGATTCCATCACCACCACCACCA CCACCGAAATCACCACAACCACCACCATGACGACAAGCATCGTGAAGGAGATCCTGGCGAGGCCGATACAGATGGCCGAC CATGTCTCAAAGCTCGCGGACGAGGCCGATCAGAATTTCCGCCAGGAATGTGCGGAGCTGAAAGGCAAAACAGAGAGGCT CGCCGGCCTCCTCCGCAGCGCGGCGAGGAACAGCAGCGACCTCTACGAACGCCCGACCCGGCGAATCATTGACGACACGG AGCAAGTCCTCGACAAAGCCCTCACGCTCGTCATGAAATGCCGCGCTAGCGGCCTCGTCAAACGTCTCTTCACCATCATC CCCACCACCGCGTTCCGCAAAACCTCCCAGCAGCTCGAGAATTCCATCGGCGATGTCCAGTGGCTCCTCCGCGTCTCCGC CTCCGCGGACGAGCGTGACGATGAGTACCTCGGCCTCCCCCCAATCGCCTCTAACGAACCCATCCTCTGCTTGATTTGGG AGCAGGTCGCAATCTTGCTCTCAGGGTGTTCGTTAGATGACCGAGGGGAAGCCGCTGCCTCATTAGTCTCTCTCGCCCGC GATAACGACCGATACGGCAAGCTTATCCTCGAAGAAGGTGGTGTTCCGCCGCTTTTGAAGCTTCTCAAGGAAGGGAGAGG GGAAGGTCAAGAGAACGCTGCCCGGGCCATCGGCCTTCTTGGCCGAGACCCGGAGAGCGTGGAGATCATTGTAAATGCTG GAGTTTGCTCAGTTTTCGCGAAAATCCTCAAAGAAGGTCACATGGCTGTTCAGATCATGGTGGCGTGGGCGATTTCGGAA CTAGCCGAGAATCACCCCAAATGCCAGGACCATTTCTCTCAGAACAATGCAATTCGCTTGCTTGTTAGCCATCTCGCATT TGAAACCATTCAAGAACACAGCAAGTATGCAATTCCAACTAGACAGAACATGGCTTCAATTCATTCTGTTCTAATGGCAA GCAATGCCACCGGCACTGACGCGAAAACAGTTCAAGAAGATGAAAGGAACACGGTTTCTCACCCAATGGGGAGCCAATCC ACCAGCCAAATGCACAATGTGGTTGCAAACACATTGGCCTTGAAAGGCAAGAATAATAATTCTGATGGATTAGGAAACAA TGAAAACAACAACTATGGAAACAACAGTGCTAATGCTAGCAATGTTAGTGCAAAACACCACAACCAGTCACATGTTTCTA TATCAGGAACAAGTATTAAAGGGAGGGAAATGGAAGATCCATACACAAAGGCGCAGATGAAGGCCATGGCGGCGAGAGCA CTGTGGAAGCTATGCAGGGGAAATGTCACAATCTGCCGCATCATTACTGAATCAAGAGCGCTTCTGTGCTTTGCTGTTCT CTTGGAGAAAGGTCCAGATGAGGTCAAGCTTTACTCAGCGCAGGCTCTGATGGAAATCACTGCTGTGGCGGAGAATCACT CAGAGCTGCGGCGCTCCGCCTTCAAACCAACCTCTCCTGCTGCCAGAGCGGTGGTGGAACAGTTCCTCAAGATCATTGAG AAGGCTGATGATGATGAACTGCTCGTGCCTTGTATTCAATCCGTCGGTAACTTGGCGAGAACTTTCAGAGCAACTGAAAC AAGGTTGGTTGCTCCTCTAGTGAAGCTTCTGGACGAAAGAGACGATCCTGTTCCCATGGAAGCAGCGACTGCCTTGATCA AATTCGCCTGCACTGATAACTACCTCCATGAAACTCACTGCACCGCGATTATAGAAGCTGGTGGTGCAAAGCATTTGATT CAGCTTGTTTACTTTGGGGATCAAAATGTGCAAATCCCTTCTTTAATTCTTCTTTGTTACATAGCTCTGCATGTTCCAAA GAGTGAGACTCTGGCTCAAGAAGAGGTGCTGATAGTTCTTGAATGGTCCACAAAGCAAGCGCATCTAATAGGAGTTCGTG CCATTGAAGAACTGTTACCAGAAGCTAAGAGTAGATTGGAACTCTATCAGTCAAGAGGTACCAGGGGATTTCACTGATTT TTAACATTGTCTGCAGAAACACTGAGATGATCCTTTATGTTGTTTTCGACAGTCTTGCATGATGAGTGTGTAGTGTATAA TGTGTATAGAGATATAGATTACTAAATTAGCAAATGAAATGCTTTCTTGTTACATTCCAACCTTTGGTATTGGTATGTCT GCAATTTGATGCTTAGATGGAAGATAAACAAGAAAATTAGAGACAAAATTAACCCTTTCAAATGCTAATAGGACGCCCTT TTTTAGTACTCACTGTCTAGTAATAGTTCATTTTCTAA
CDS sequence (LotjaGi3g1v0523100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGACAAGCATCGTGAAGGAGATCCTGGCGAGGCCGATACAGATGGCCGACCATGTCTCAAAGCTCGCGGACGAGGC CGATCAGAATTTCCGCCAGGAATGTGCGGAGCTGAAAGGCAAAACAGAGAGGCTCGCCGGCCTCCTCCGCAGCGCGGCGA GGAACAGCAGCGACCTCTACGAACGCCCGACCCGGCGAATCATTGACGACACGGAGCAAGTCCTCGACAAAGCCCTCACG CTCGTCATGAAATGCCGCGCTAGCGGCCTCGTCAAACGTCTCTTCACCATCATCCCCACCACCGCGTTCCGCAAAACCTC CCAGCAGCTCGAGAATTCCATCGGCGATGTCCAGTGGCTCCTCCGCGTCTCCGCCTCCGCGGACGAGCGTGACGATGAGT ACCTCGGCCTCCCCCCAATCGCCTCTAACGAACCCATCCTCTGCTTGATTTGGGAGCAGGTCGCAATCTTGCTCTCAGGG TGTTCGTTAGATGACCGAGGGGAAGCCGCTGCCTCATTAGTCTCTCTCGCCCGCGATAACGACCGATACGGCAAGCTTAT CCTCGAAGAAGGTGGTGTTCCGCCGCTTTTGAAGCTTCTCAAGGAAGGGAGAGGGGAAGGTCAAGAGAACGCTGCCCGGG CCATCGGCCTTCTTGGCCGAGACCCGGAGAGCGTGGAGATCATTGTAAATGCTGGAGTTTGCTCAGTTTTCGCGAAAATC CTCAAAGAAGGTCACATGGCTGTTCAGATCATGGTGGCGTGGGCGATTTCGGAACTAGCCGAGAATCACCCCAAATGCCA GGACCATTTCTCTCAGAACAATGCAATTCGCTTGCTTGTTAGCCATCTCGCATTTGAAACCATTCAAGAACACAGCAAGT ATGCAATTCCAACTAGACAGAACATGGCTTCAATTCATTCTGTTCTAATGGCAAGCAATGCCACCGGCACTGACGCGAAA ACAGTTCAAGAAGATGAAAGGAACACGGTTTCTCACCCAATGGGGAGCCAATCCACCAGCCAAATGCACAATGTGGTTGC AAACACATTGGCCTTGAAAGGCAAGAATAATAATTCTGATGGATTAGGAAACAATGAAAACAACAACTATGGAAACAACA GTGCTAATGCTAGCAATGTTAGTGCAAAACACCACAACCAGTCACATGTTTCTATATCAGGAACAAGTATTAAAGGGAGG GAAATGGAAGATCCATACACAAAGGCGCAGATGAAGGCCATGGCGGCGAGAGCACTGTGGAAGCTATGCAGGGGAAATGT CACAATCTGCCGCATCATTACTGAATCAAGAGCGCTTCTGTGCTTTGCTGTTCTCTTGGAGAAAGGTCCAGATGAGGTCA AGCTTTACTCAGCGCAGGCTCTGATGGAAATCACTGCTGTGGCGGAGAATCACTCAGAGCTGCGGCGCTCCGCCTTCAAA CCAACCTCTCCTGCTGCCAGAGCGGTGGTGGAACAGTTCCTCAAGATCATTGAGAAGGCTGATGATGATGAACTGCTCGT GCCTTGTATTCAATCCGTCGGTAACTTGGCGAGAACTTTCAGAGCAACTGAAACAAGGTTGGTTGCTCCTCTAGTGAAGC TTCTGGACGAAAGAGACGATCCTGTTCCCATGGAAGCAGCGACTGCCTTGATCAAATTCGCCTGCACTGATAACTACCTC CATGAAACTCACTGCACCGCGATTATAGAAGCTGGTGGTGCAAAGCATTTGATTCAGCTTGTTTACTTTGGGGATCAAAA TGTGCAAATCCCTTCTTTAATTCTTCTTTGTTACATAGCTCTGCATGTTCCAAAGAGTGAGACTCTGGCTCAAGAAGAGG TGCTGATAGTTCTTGAATGGTCCACAAAGCAAGCGCATCTAATAGGAGTTCGTGCCATTGAAGAACTGTTACCAGAAGCT AAGAGTAGATTGGAACTCTATCAGTCAAGAGGTACCAGGGGATTTCACTGA
Protein sequence (LotjaGi3g1v0523100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTSIVKEILARPIQMADHVSKLADEADQNFRQECAELKGKTERLAGLLRSAARNSSDLYERPTRRIIDDTEQVLDKALT LVMKCRASGLVKRLFTIIPTTAFRKTSQQLENSIGDVQWLLRVSASADERDDEYLGLPPIASNEPILCLIWEQVAILLSG CSLDDRGEAAASLVSLARDNDRYGKLILEEGGVPPLLKLLKEGRGEGQENAARAIGLLGRDPESVEIIVNAGVCSVFAKI LKEGHMAVQIMVAWAISELAENHPKCQDHFSQNNAIRLLVSHLAFETIQEHSKYAIPTRQNMASIHSVLMASNATGTDAK TVQEDERNTVSHPMGSQSTSQMHNVVANTLALKGKNNNSDGLGNNENNNYGNNSANASNVSAKHHNQSHVSISGTSIKGR EMEDPYTKAQMKAMAARALWKLCRGNVTICRIITESRALLCFAVLLEKGPDEVKLYSAQALMEITAVAENHSELRRSAFK PTSPAARAVVEQFLKIIEKADDDELLVPCIQSVGNLARTFRATETRLVAPLVKLLDERDDPVPMEAATALIKFACTDNYL HETHCTAIIEAGGAKHLIQLVYFGDQNVQIPSLILLCYIALHVPKSETLAQEEVLIVLEWSTKQAHLIGVRAIEELLPEA KSRLELYQSRGTRGFH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 656 | 653 | 0.0 | – | |
| PANTHER | 4 | 656 | 653 | 0.0 | – | |
| Gene3D | 150 | 323 | 174 | 1.7E-24 | ||
| SUPERFAMILY | 157 | 613 | 457 | 1.25E-43 | ||
| SMART | 179 | 220 | 42 | 1.4 | ||
| Pfam | 186 | 217 | 32 | 4.1E-5 | ||
| ProSiteProfiles | 191 | 233 | 43 | 8.872 | ||
| SMART | 221 | 261 | 41 | 0.2 | ||
| MobiDBLite | 318 | 341 | 24 | - | – | |
| MobiDBLite | 353 | 375 | 23 | - | – | |
| Gene3D | 400 | 637 | 238 | 6.7E-21 | ||
| SMART | 426 | 466 | 41 | 150.0 | ||
| SMART | 482 | 518 | 37 | 510.0 | ||
| SMART | 561 | 601 | 41 | 0.27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0523100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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