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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0523900 |
| Transcript ID | LotjaGi3g1v0523900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|I1KT07|I1KT07_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0523900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94102621..94105529) extracted from Lotus japonicus Gifu genome v1.2.
TTTCGGCAACCACCAACTAACCATGGAACACCCACGTCCGTTTCTCCCTGAAGAACTCGGGGTAGAAATCTTATCATGGC TTCCAGTAAAATCCTTAGTGCGATTCAGGTGTGTTTCTAAGTCATGGAACTCTACTATCTCTGATTCTCAGTTCATCAAA CTTCACCTTCACCGATCTTATTCTACAAGAAACTTAGATTTGGCCCACCTCCGCTCACTGATAACTTTGCCATTGGAAAA CCGTCCAGCAATTGTAGAAACAAGGCCAAGTTGTCTTTTAGAGTACGGCTTCGTTGAAACCTTCAACGGGTTAATTTGTT TGCGTTTTGTATCAGAATATGACCGTGAACTTAAACACTACGTCTCTCGTGTCCGTTTATGGAACCCAGCCACGAGGTCA TCGTCTCAACCTTCACCACCTCTAATTCACCCCACCACCTGTTGTTATTTTGGGTTTGGTTGTGATTCTTCAACTGACAC CTACAAGGTGGTGGCAGTGATGTTCTCTCAGCATCGGTTCGATCAAGATCGGGAGAAAACGGTGCATGTTTACAACATGG GTGCTACTTGTTGGAGAACAATTCAAGTTCCCCTTCTTCCCTGTATGGATCATGCAAGTGGTGCAGTTTATGTCAGCAAC TCTCTTAACTGGGTAGTAGCTCTAACTTGGGATGTAATAATCTATGGGAAAGGTGAATTATTTAACTATGATCCGTACAT GATTTTTTCGTTTGATTTGGGAGAAGAAAAATGTGTACAACTGTCATTGCCTTATTGTTCTCGACGTAGAGATGAATTCA ACGATTTTATGCCAACTCTTGGGGTTTTGAGAGGTTGTCTATGTATTTGTCAAACTCAAGACAAGAAGATACATTTTGAG ATTTGGCATATGAAGGAGTTTGGAGTGCACGAGTCTTGGACTTTGTTGTTTAACATTGCTAACTATGAAAGTATTACTCG AAATATAGATCGATGGCCCTGTCTTACAATGTACATGTCTGAGAATGATGATATCTTGTTGTTGTCAAAATCTATTTATC ACCCATACGAAGCACAAGCAGTTCTCTATACACACAAAGACAATGACTTACAAGTCATGAACATTGCTAAAGACATTGGT GATTTCTATGCCAATAATTACATTGAAAGCTTGGTTTCACCTTATTAAAAGTAAGTGACATTTAGTTATCATCCTTGGAC TTTATTATTAAATCATGTATCATGCATCCAGACTCTTACGATCATTGTACACTGAAGTTACTTCAATGAAATCAGCTTAT AAAAAAAAACTTCAATGAAATCAATTTTCTTTTTTCTTCCATGGTCGTTCACTCGTTTGTATCAATTTGGTATGCACTTA TCAGATTCACATGTAAATTTCATTTGAAGGGAAAGTGTAACAATGAAGGTTGAAGTATTGAATTAGATCATGCGAGGAAG TTAAGGATAGTCATAGGTTGTATATTATATTAAATCTTGTGATTGTAAATTTGGTTCCATTGCTTTAAACAGATTTGTGT TGAAACTTGTGTAGTTCAACTTATTTTCCTTTTCCATTACTGTACTTTTGGAGTTTTGATTTGCTTTGATGATCCAACTT TCTGAATTTGACTTTTATTCTATCATTGTTTGATATTTACTTTATATATGCATGGTGTGAGTGGTGACTACATTATCATT TCTTATCCAGTATATGTTTGGTCGTCTATAGTGTGTTAACTATAGGTTACATGAGTTCGTTTAAACAAGTGATCTTGGAT GAAGTTTCAAAACATCAGTTGCAACTAGCTACCTTATTATTTGGTTCGATGAAACTAGGATAGCTTGTAATATTTTCCTT GAATAAAGACTGTTCAAAGCAGAGGACATCTTAATATGGTGAAAATGTAAATGATTATCAGCGCTTTATCTAATAGGTGC AAAATTTTGTGATGGCATTTGGTTTGAAACAACTTTTATTTACATTTAAGCATGGCTAAAACAAATAAGCAACCATAGTT TTAGCCATGCTTAATAAAATGGTTTCAAATCCGTTTTTAATGCAATTGGTGCAGATTGCATATGGCTTTACCCACTTTTA ATTTGTTACACGTTTTTGTGATAAATGGTTGAAATCAGCTTGTTGGTGGTCACTTTTCTGATATTACTATTTTCCAAATG TAGGAGTATTAAGAGAGATGGAGGAATGCTTGCTTCAGATGTTGGATGACTTTGTCACTCAGAATAGCATATTGGATCTT TACTCTTTTGTTTCCTTGCATCTCCTTGTTGACCGAAGCTATATATCAATGAATGCTATCATGTTAGCAATAATAGATAT TATAAATATGCTTTGCTAAAATTTATTCATGATGGATTGGAGGGAAGTGTCAAATACTATTCTTTCACAATTTCTGTAGT TGTTCTGGCTCCTCCCTTCACAAGACTAGTCTTGTTATATCTTATGATCATCACTTTACTACTCAGAAAATGGGTGAGAT TAATTGATCAAGTTATTTTGTCTGAGCTACCAACACCAGCTCCATCATGTTGTTCCCTTGAATCCAAATTTTTACTTTTT AACAACTGAGAAATTCCCCTTTTGGTCTCAAAGTCCATCTTACCATCCTATAAACCAACGCTCTCCAACTCCAAGCTGTC ATTTTTTCCAACATTTTTGTACATTTCATACATACAATTACAGTGCCTAGTTTCATCTCCAAGAATTGAGAGAAGAAGAA TTAGGAAAGTCTGAAGCATTGCCTTTCATATGGTTCAAAATAGTAAAGTATTTTGGTGAAGAATGTAATGATGGAAGTCT AAGAATGTGTTTGGATTTCAGTTTGTAAAACAGAATTTGTGTGAATGTAGATTTGCAAATCAGAGTTTGAGTTAATGTTG CCTGGTTGTAATGTGATTTATGTTTGGAT
CDS sequence (LotjaGi3g1v0523900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACACCCACGTCCGTTTCTCCCTGAAGAACTCGGGGTAGAAATCTTATCATGGCTTCCAGTAAAATCCTTAGTGCG ATTCAGGTGTGTTTCTAAGTCATGGAACTCTACTATCTCTGATTCTCAGTTCATCAAACTTCACCTTCACCGATCTTATT CTACAAGAAACTTAGATTTGGCCCACCTCCGCTCACTGATAACTTTGCCATTGGAAAACCGTCCAGCAATTGTAGAAACA AGGCCAAGTTGTCTTTTAGAGTACGGCTTCGTTGAAACCTTCAACGGGTTAATTTGTTTGCGTTTTGTATCAGAATATGA CCGTGAACTTAAACACTACGTCTCTCGTGTCCGTTTATGGAACCCAGCCACGAGGTCATCGTCTCAACCTTCACCACCTC TAATTCACCCCACCACCTGTTGTTATTTTGGGTTTGGTTGTGATTCTTCAACTGACACCTACAAGGTGGTGGCAGTGATG TTCTCTCAGCATCGGTTCGATCAAGATCGGGAGAAAACGGTGCATGTTTACAACATGGGTGCTACTTGTTGGAGAACAAT TCAAGTTCCCCTTCTTCCCTGTATGGATCATGCAAGTGGTGCAGTTTATGTCAGCAACTCTCTTAACTGGGTAGTAGCTC TAACTTGGGATGTAATAATCTATGGGAAAGGTGAATTATTTAACTATGATCCGTACATGATTTTTTCGTTTGATTTGGGA GAAGAAAAATGTGTACAACTGTCATTGCCTTATTGTTCTCGACGTAGAGATGAATTCAACGATTTTATGCCAACTCTTGG GGTTTTGAGAGGTTGTCTATGTATTTGTCAAACTCAAGACAAGAAGATACATTTTGAGATTTGGCATATGAAGGAGTTTG GAGTGCACGAGTCTTGGACTTTGTTGTTTAACATTGCTAACTATGAAAGTATTACTCGAAATATAGATCGATGGCCCTGT CTTACAATGTACATGTCTGAGAATGATGATATCTTGTTGTTGTCAAAATCTATTTATCACCCATACGAAGCACAAGCAGT TCTCTATACACACAAAGACAATGACTTACAAGTCATGAACATTGCTAAAGACATTGGTGATTTCTATGCCAATAATTACA TTGAAAGCTTGGTTTCACCTTATTAA
Protein sequence (LotjaGi3g1v0523900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEHPRPFLPEELGVEILSWLPVKSLVRFRCVSKSWNSTISDSQFIKLHLHRSYSTRNLDLAHLRSLITLPLENRPAIVET RPSCLLEYGFVETFNGLICLRFVSEYDRELKHYVSRVRLWNPATRSSSQPSPPLIHPTTCCYFGFGCDSSTDTYKVVAVM FSQHRFDQDREKTVHVYNMGATCWRTIQVPLLPCMDHASGAVYVSNSLNWVVALTWDVIIYGKGELFNYDPYMIFSFDLG EEKCVQLSLPYCSRRRDEFNDFMPTLGVLRGCLCICQTQDKKIHFEIWHMKEFGVHESWTLLFNIANYESITRNIDRWPC LTMYMSENDDILLLSKSIYHPYEAQAVLYTHKDNDLQVMNIAKDIGDFYANNYIESLVSPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 126 | 122 | 6.6E-10 | – | |
| Pfam | 8 | 44 | 37 | 8.5E-9 | ||
| ProSiteProfiles | 8 | 47 | 40 | 8.915 | ||
| SMART | 8 | 48 | 41 | 4.2E-10 | ||
| SUPERFAMILY | 8 | 54 | 47 | 8.37E-16 | ||
| PANTHER | 14 | 330 | 317 | 3.2E-40 | – | |
| PANTHER | 14 | 330 | 317 | 3.2E-40 | – | |
| TIGRFAM | 93 | 349 | 257 | 2.9E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0523900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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