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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0524100 |
| Transcript ID | LotjaGi3g1v0524100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamyl-tRNA (Gln) amidotransferase subunit A; TAIR: AT4G34880.2 Amidase family protein; Swiss-Prot: sp|Q9URY4|YI01_SCHPO Putative amidase C869.01; TrEMBL-Plants: tr|A0A072ULF6|A0A072ULF6_MEDTR Amidase C869.01-like protein, putative; Found in the gene: LotjaGi3g1v0524100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94111120..94113760) extracted from Lotus japonicus Gifu genome v1.2.
GTTGCTAGTAGCTTTAGTTTCCATCTTGCCTTGGTTTCAACAAATCAAAAGATGGGAACAATTACAACAACAGCTAAGTT TTATGTCTGTGTGGTGTTATTAGCAGTGGTTTTCAGAGATGTGATCAATGCAGTTGAGTATGAAGAAGGGTTCAGCTTCA ACATCAAGGAAGCCACTATAGAGGACATACAAAAAGCCTTCACACAAAACCACCTAACGTCCAGGAAACTTGTTGACTTC TACCTGCAGAGGATTCAAGCCCTCAATCCTACACTTCGCGCCGTGCTGGAAGTCAATCCGGACGCGCTTGATCAAGCGGA CCAGGCTGATCGCGAGAGAAGGCGAGGAAATCAGAACCGTTCATTGCTGCACGGGGTGCCCGTGCTGCTCAAGGACAGCA TTGCCACCGCGGATGAGCTGAACACCACGGCAGGGTCTTTTGCGTTGCTCGGGTCAAGGGTTCCACGAGACGCGCACGTG GTGGCGAAGCTGAGAGACGTTGGTGCTGTGATTCTTGGGAAAGCTAGTCTCAGTGAGTGGTATGGGGTTCGTTCTTCCAC CATGCCACAAGCTTGGTGCGCCAGAGGTGGACAAGCATTGGTTAGTATGAGTCTGTTTGGATGCGGATCAAAGAGTTTTA TATTGTTGTTTATCTAGTGCATGTTTTAGTAGAAAAATTCTAACAAATGTTCTTCACTCTGATACAAACAAACTTCATGT CAACTTTAACTTTTGCATGGATTTTTTTTTCAATTTTCATATCACATTACCATCTGACAATCAATTTTTGGTGCAATCAT TGTGCAGTTAAGCAATCTCAGTCAACTAACATTGCGCAAATCAATTCTAAGAACATGATTTACATATAATTTATTGCATT GAAGTTAAAATAATTTGATCTTTATTTTAAGGTGGAGAACCTTAATGGGAGTCACTGCACCAAAAATTGATTGTAGCCCC AACCCAGAACCAATCTATTACATTTTTCACTTCTCTTGTAGATAATTTCATTAGAATAGTATGTAACGAAATGGTGAATT TTTCTAATAAACAGAATCCTTATGTGGAGTCTCAAAGTCCATGTGGTTCTAGCTCTGGACCCGCTATTTCAGTGGCAACA AACATGGTTGCAGTTTCACTGGGGACTGAAACTGATGGCTCCATTATCTGCCCAGCTGATCACAACTCAGTAGTGGGGTT CAAGCCCACCGTTGGACTCATTAGCAGAGCAGGTGTCATACCAGTTTCACCTCGTCAGGATACAATTGGGTAACAACTTG CTCTGGTTTGCTCTGTCTTCCCCTGTTTTGTTCTGTTTTCATATTAACATACATCACTTATTAGCTTGCTGAAGGTTGAT ATGTGTTTTTGCACTTGTGTAGGCCAATATGCAGGACAGTTTCAGATGCAGTTCATGTGCTTGATGTGATTGTTGGGTTT GATCCCAGAGACTCTGAAGCTACAGAGTCAGCAGCCAAGTTTATACCTCAAGGTGGTTATAAGCAGTTCCTCAAGAAAGA AGGGCTTAAAGGAAAGAAACTTGGTGTTGTGAGGGACCCTTTTTTCAAGTCCTTTAATGGATCCAATGCCATTTCCATCT TTGATGATCATCTTAATGTGTTAAGGTAAATAAAAACAGTGCTCACCAATTGCTTGAGAATAATACCACATTGCCATGGC CTTCTTTGCTAATTAAGCTTCACTGGCACACACTATATTTTTATACATTAAAATGCAAAAAAAAGGGAAAATTTGTTTAA TATGAACACTGAGATCAATTATGTTGCTTTTTCAATTTGAAGGCAAAGAGGTGCAACAGTGGTAGATAATTTGGAAATAG CAAATGTGACCATTATTCTCAATCCTTTCCAAAGTGGTGAAGCAATAGCCTTACTAGCAGAGTTCAAGTTGTCCATCAAT GAGTATCTGCAAGAACTTGTTTCTTCTCCTGTGAGGTCATTAACTGAGATTATTGAGTTCAACTTCAATAACCCTGGTTT AGTAAGTACAATCCACTATCACTCAGTTAATTATATATATCTTCTATATGACAGTAATTTTTTTTTATATTCATTAAATT TATTTGATCAATCATTTATATCTTATATTTATAATATTTGAAACTATCATTTGAAAAACATTATATTTTGGCTTTATCAA TTTCTTAATTTGATTTAGCAATAATGAACTATTTGTGCATTTGTAGGAAAAGACAAATGAGTTTGGACAGGATTTGTTTA TTGCATCAAATATGACCAATGGCTTTGGACAAAAGGAATATGTGGCAATGGAGATGATGAAGCAATTATCACAAAATGGG TTTGAGAAGCTGATGAAGGAGAATCAATTGGATGCACTAGTGACCTTAGGCTCTGATGCTTCTAGGGTTTTAGCAATTGG AGGGTATCCTGCAATCACTGTCCCAGCTGGGTATGATAGCAATGGATTGCCATTTGGCATCTCTTTTGGGGGGTTAAAGG GAACTGAGCCAAAATTAATTGAGATTGCTTATGACTTTGAGCAAGCTACTAAGGCAAGGAAGCCTCCACCTAATTTTTAA TTTACCAAAGGGATACCATGTACTGAAGGATAACAGATGATTTAAGAATTGATCAATAAAATCAGGTCTAGTTTGGATAA A
CDS sequence (LotjaGi3g1v0524100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACAATTACAACAACAGCTAAGTTTTATGTCTGTGTGGTGTTATTAGCAGTGGTTTTCAGAGATGTGATCAATGC AGTTGAGTATGAAGAAGGGTTCAGCTTCAACATCAAGGAAGCCACTATAGAGGACATACAAAAAGCCTTCACACAAAACC ACCTAACGTCCAGGAAACTTGTTGACTTCTACCTGCAGAGGATTCAAGCCCTCAATCCTACACTTCGCGCCGTGCTGGAA GTCAATCCGGACGCGCTTGATCAAGCGGACCAGGCTGATCGCGAGAGAAGGCGAGGAAATCAGAACCGTTCATTGCTGCA CGGGGTGCCCGTGCTGCTCAAGGACAGCATTGCCACCGCGGATGAGCTGAACACCACGGCAGGGTCTTTTGCGTTGCTCG GGTCAAGGGTTCCACGAGACGCGCACGTGGTGGCGAAGCTGAGAGACGTTGGTGCTGTGATTCTTGGGAAAGCTAGTCTC AGTGAGTGGTATGGGGTTCGTTCTTCCACCATGCCACAAGCTTGGTGCGCCAGAGGTGGACAAGCATTGAATCCTTATGT GGAGTCTCAAAGTCCATGTGGTTCTAGCTCTGGACCCGCTATTTCAGTGGCAACAAACATGGTTGCAGTTTCACTGGGGA CTGAAACTGATGGCTCCATTATCTGCCCAGCTGATCACAACTCAGTAGTGGGGTTCAAGCCCACCGTTGGACTCATTAGC AGAGCAGGTGTCATACCAGTTTCACCTCGTCAGGATACAATTGGGCCAATATGCAGGACAGTTTCAGATGCAGTTCATGT GCTTGATGTGATTGTTGGGTTTGATCCCAGAGACTCTGAAGCTACAGAGTCAGCAGCCAAGTTTATACCTCAAGGTGGTT ATAAGCAGTTCCTCAAGAAAGAAGGGCTTAAAGGAAAGAAACTTGGTGTTGTGAGGGACCCTTTTTTCAAGTCCTTTAAT GGATCCAATGCCATTTCCATCTTTGATGATCATCTTAATGTGTTAAGGCAAAGAGGTGCAACAGTGGTAGATAATTTGGA AATAGCAAATGTGACCATTATTCTCAATCCTTTCCAAAGTGGTGAAGCAATAGCCTTACTAGCAGAGTTCAAGTTGTCCA TCAATGAGTATCTGCAAGAACTTGTTTCTTCTCCTGTGAGGTCATTAACTGAGATTATTGAGTTCAACTTCAATAACCCT GGTTTAGAAAAGACAAATGAGTTTGGACAGGATTTGTTTATTGCATCAAATATGACCAATGGCTTTGGACAAAAGGAATA TGTGGCAATGGAGATGATGAAGCAATTATCACAAAATGGGTTTGAGAAGCTGATGAAGGAGAATCAATTGGATGCACTAG TGACCTTAGGCTCTGATGCTTCTAGGGTTTTAGCAATTGGAGGGTATCCTGCAATCACTGTCCCAGCTGGGTATGATAGC AATGGATTGCCATTTGGCATCTCTTTTGGGGGGTTAAAGGGAACTGAGCCAAAATTAATTGAGATTGCTTATGACTTTGA GCAAGCTACTAAGGCAAGGAAGCCTCCACCTAATTTTTAA
Protein sequence (LotjaGi3g1v0524100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTITTTAKFYVCVVLLAVVFRDVINAVEYEEGFSFNIKEATIEDIQKAFTQNHLTSRKLVDFYLQRIQALNPTLRAVLE VNPDALDQADQADRERRRGNQNRSLLHGVPVLLKDSIATADELNTTAGSFALLGSRVPRDAHVVAKLRDVGAVILGKASL SEWYGVRSSTMPQAWCARGGQALNPYVESQSPCGSSSGPAISVATNMVAVSLGTETDGSIICPADHNSVVGFKPTVGLIS RAGVIPVSPRQDTIGPICRTVSDAVHVLDVIVGFDPRDSEATESAAKFIPQGGYKQFLKKEGLKGKKLGVVRDPFFKSFN GSNAISIFDDHLNVLRQRGATVVDNLEIANVTIILNPFQSGEAIALLAEFKLSINEYLQELVSSPVRSLTEIIEFNFNNP GLEKTNEFGQDLFIASNMTNGFGQKEYVAMEMMKQLSQNGFEKLMKENQLDALVTLGSDASRVLAIGGYPAITVPAGYDS NGLPFGISFGGLKGTEPKLIEIAYDFEQATKARKPPPNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| PANTHER | 15 | 517 | 503 | 7.9E-256 | – | |
| PANTHER | 15 | 517 | 503 | 7.9E-256 | – | |
| Gene3D | 17 | 517 | 501 | 7.1E-175 | ||
| Phobius | 22 | 27 | 6 | - | – | |
| Phobius | 28 | 519 | 492 | - | – | |
| SUPERFAMILY | 37 | 517 | 481 | 1.57E-100 | ||
| Pfam | 60 | 455 | 396 | 2.1E-72 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0524100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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