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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR023631
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 42 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.686s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0213329.1
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356518808|ref|XP_003528069.1| chr0 107713973 107717068 +
4 domain predictions
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Lj0g3v0244489.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|357441631|ref|XP_003591093.1| chr0 126856636 126860139 -
4 domain predictions
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Lj0g3v0251929.1
n.a. PREDICTED: fatty acid amide hydrolase-like [Cicer arietinum] gi|502077377|ref|XP_004485635.1| chr0 130630773 130634190 -
4 domain predictions
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Lj1g3v1318340.1
n.a. Histone deacetylase [Medicago truncatula] gi|357519987|ref|XP_003630282.1| chr1 16010069 16014655 -
2 domain predictions
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Lj1g3v2126200.1
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356518808|ref|XP_003528069.1| chr1 25582901 25585006 -
4 domain predictions
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Lj1g3v2126210.1
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356518808|ref|XP_003528069.1| chr1 25585144 25587608 -
3 domain predictions
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Lj2g3v0661550.1
n.a. PREDICTED: translocon at the outer membrane of chloroplasts 64-like isoform X1 [Cicer arietinum] gi|502138058|ref|XP_004503273.1| chr2 10699445 10705324 -
4 domain predictions
 –
Lj2g3v0674850.1
n.a. PREDICTED: translocon at the outer membrane of chloroplasts 64-like isoform X1 [Cicer arietinum] gi|502138058|ref|XP_004503273.1| chr2 10806748 10813566 -
4 domain predictions
 –
Lj3g3v3500110.2
n.a. amidase [Cucumis melo subsp]. melo] gi|307136168|gb|ADN34009.1| chr3 42514386 42527615 -
3 domain predictions
 –
Lj4g3v0341190.1
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356512046|ref|XP_003524732.1| chr4 4593527 4604643 +
4 domain predictions
 –
Lj4g3v2603600.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|357520427|ref|XP_003630502.1| chr4 34824438 34827418 +
4 domain predictions
 –
Lj4g3v2742710.1
n.a. Histone deacetylase [Medicago truncatula] gi|357519987|ref|XP_003630282.1| chr4 36796735 36801321 +
2 domain predictions
 –
Lj4g3v2833050.1
n.a. PREDICTED: fatty acid amide hydrolase-like isoform X2 [Cicer arietinum] gi|502139767|ref|XP_004503894.1| chr4 37988407 37995108 +
4 domain predictions
 –
Lj4g3v2860650.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|357520309|ref|XP_003630443.1| chr4 38338845 38343390 +
4 domain predictions
 –
Lj4g3v2860650.2
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356512926|ref|XP_003525165.1| chr4 38340466 38343390 +
3 domain predictions
 –
Lj4g3v3114860.1
n.a. PREDICTED: translocon at the outer membrane of chloroplasts 64-like isoform X1 [Cicer arietinum] gi|502138058|ref|XP_004503273.1| chr4 42155148 42161027 +
4 domain predictions
 –
Lj5g3v1484550.1
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356576771|ref|XP_003556503.1| chr5 21616467 21620751 +
4 domain predictions
 –
Lj5g3v1484550.2
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356576771|ref|XP_003556503.1| chr5 21616467 21620751 +
4 domain predictions
 –
Lj6g3v0922040.1
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like isoform X1 [Cicer arietinum] gi|502128559|ref|XP_004500003.1| chr6 9573550 9578231 -
4 domain predictions
 –
Lj6g3v1966870.1
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356525874|ref|XP_003531546.1| chr6 22685340 22686265 -
4 domain predictions
 –
Lj6g3v2130130.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|357520427|ref|XP_003630502.1| chr6 24763002 24770625 +
4 domain predictions
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Lj6g3v2182060.1
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356554842|ref|XP_003545751.1| chr6 25192025 25196247 -
4 domain predictions
 –
Lj6g3v2218190.1
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356525874|ref|XP_003531546.1| chr6 25669908 25675635 -
4 domain predictions
 –
Lj6g3v2218190.2
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356525874|ref|XP_003531546.1| chr6 25669908 25675635 -
4 domain predictions
 –
LotjaGi1g1v0324600.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT5G64440.1 fatty acid amide hydrolase; Swiss-Prot: sp|Q7XJJ7|FAAH_ARATH Fatty acid amide hydrolase; TrEMBL-Plants: tr|G7J2M6|G7J2M6_MEDTR Fatty acid amide hydrolase-like protein; Found in the gene: LotjaGi1g1v0324600 LjG1.1_chr1 77686677 77692641 +
2 domain predictions
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LotjaGi1g1v0421500.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT5G64440.1 fatty acid amide hydrolase; Swiss-Prot: sp|Q7XJJ7|FAAH_ARATH Fatty acid amide hydrolase; TrEMBL-Plants: tr|G7J2M6|G7J2M6_MEDTR Fatty acid amide hydrolase-like protein; Found in the gene: LotjaGi1g1v0421500 LjG1.1_chr1 91536189 91542151 -
2 domain predictions
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LotjaGi2g1v0197000.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT3G17970.1 translocon at the outer membrane of chloroplasts 64-III; Swiss-Prot: sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64; TrEMBL-Plants: tr|G7LE58|G7LE58_MEDTR Translocon at the outer membrane ofs-like protein; Found in the gene: LotjaGi2g1v0197000 LjG1.1_chr2 63187113 63194807 -
2 domain predictions
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LotjaGi3g1v0524100.1
n.a. Glutamyl-tRNA (Gln) amidotransferase subunit A; TAIR: AT4G34880.2 Amidase family protein; Swiss-Prot: sp|Q9URY4|YI01_SCHPO Putative amidase C869.01; TrEMBL-Plants: tr|A0A072ULF6|A0A072ULF6_MEDTR Amidase C869.01-like protein, putative; Found in the gene: LotjaGi3g1v0524100 LjG1.1_chr3 94111120 94113760 -
2 domain predictions
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LotjaGi4g1v0035400.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT5G09420.1 translocon at the outer membrane of chloroplasts 64-V; Swiss-Prot: sp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial; TrEMBL-Plants: tr|I1K2N1|I1K2N1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0035400 LjG1.1_chr4 4281722 4293134 +
2 domain predictions
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LotjaGi4g1v0035400.2
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT5G09420.1 translocon at the outer membrane of chloroplasts 64-V; Swiss-Prot: sp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial; TrEMBL-Plants: tr|I1K2N1|I1K2N1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0035400 LjG1.1_chr4 4281781 4292979 +
2 domain predictions
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LotjaGi4g1v0372500.1
n.a. Glutamyl-tRNA (Gln) amidotransferase subunit A; TAIR: AT4G34880.2 Amidase family protein; Swiss-Prot: sp|Q9URY4|YI01_SCHPO Putative amidase C869.01; TrEMBL-Plants: tr|A0A072U458|A0A072U458_MEDTR Amidase C869.01-like protein, putative; Found in the gene: LotjaGi4g1v0372500 LjG1.1_chr4 75223634 75227533 +
2 domain predictions
 –
LotjaGi4g1v0372500.2
n.a. Glutamyl-tRNA (Gln) amidotransferase subunit A; TAIR: AT4G34880.2 Amidase family protein; Swiss-Prot: sp|Q9URY4|YI01_SCHPO Putative amidase C869.01; TrEMBL-Plants: tr|A0A072U458|A0A072U458_MEDTR Amidase C869.01-like protein, putative; Found in the gene: LotjaGi4g1v0372500 LjG1.1_chr4 75223784 75225029 +
2 domain predictions
 –
LotjaGi4g1v0413100.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT5G64440.1 fatty acid amide hydrolase; Swiss-Prot: sp|Q7XJJ7|FAAH_ARATH Fatty acid amide hydrolase; TrEMBL-Plants: tr|A0A151R6Z3|A0A151R6Z3_CAJCA Glutamyl-tRNA(Gln) amidotransferase subunit A; Found in the gene: LotjaGi4g1v0413100 LjG1.1_chr4 78874587 78882527 +
2 domain predictions
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LotjaGi4g1v0416700_LC.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A-like protein; TAIR: AT5G07360.1 Amidase family protein; Swiss-Prot: sp|Q1GYD3|GATA_METFK Glutamyl-tRNA(Gln) amidotransferase subunit A; TrEMBL-Plants: tr|A0A072TUX3|A0A072TUX3_MEDTR Glutamyl-tRNA(Gln) amidotransferase subunit A-like protein; Found in the gene: LotjaGi4g1v0416700_LC LjG1.1_chr4 79242519 79247261 +
2 domain predictions
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LotjaGi4g1v0464300.3
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT3G17970.1 translocon at the outer membrane of chloroplasts 64-III; Swiss-Prot: sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64; TrEMBL-Plants: tr|G7LE58|G7LE58_MEDTR Translocon at the outer membrane ofs-like protein; Found in the gene: LotjaGi4g1v0464300 LjG1.1_chr4 83439251 83446423 +
2 domain predictions
 –
LotjaGi5g1v0220000.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT1G08980.1 amidase 1; Swiss-Prot: sp|Q9FR37|AMI1_ARATH Amidase 1; TrEMBL-Plants: tr|I1NIY1|I1NIY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0220000 LjG1.1_chr5 52641023 52649524 +
2 domain predictions
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LotjaGi6g1v0171200.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT3G25660.1 Amidase family protein; Swiss-Prot: sp|Q9LI77|GATA_ARATH Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7IZY8|G7IZY8_MEDTR Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Found in the gene: LotjaGi6g1v0171200 LjG1.1_chr6 45794241 45799713 -
2 domain predictions
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LotjaGi6g1v0316500_LC.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT5G09420.1 translocon at the outer membrane of chloroplasts 64-V; Swiss-Prot: sp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial; TrEMBL-Plants: tr|A0A151T0H1|A0A151T0H1_CAJCA Glutamyl-tRNA(Gln) amidotransferase subunit A; Found in the gene: LotjaGi6g1v0316500_LC LjG1.1_chr6 63429380 63432220 -
2 domain predictions
 –
LotjaGi6g1v0343000.1
n.a. Glutamyl-tRNA (Gln) amidotransferase subunit A; TAIR: AT4G34880.2 Amidase family protein; Swiss-Prot: sp|Q9URY4|YI01_SCHPO Putative amidase C869.01; TrEMBL-Plants: tr|A0A072U452|A0A072U452_MEDTR Amidase C869.01-like protein, putative; Found in the gene: LotjaGi6g1v0343000 LjG1.1_chr6 65591090 65599856 +
2 domain predictions
 –
LotjaGi6g1v0343000.2
n.a. Glutamyl-tRNA (Gln) amidotransferase subunit A; TAIR: AT4G34880.2 Amidase family protein; Swiss-Prot: sp|Q9URY4|YI01_SCHPO Putative amidase C869.01; TrEMBL-Plants: tr|A0A072U452|A0A072U452_MEDTR Amidase C869.01-like protein, putative; Found in the gene: LotjaGi6g1v0343000 LjG1.1_chr6 65591686 65599718 +
2 domain predictions
 –
LotjaGi6g1v0347100.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT5G64440.1 fatty acid amide hydrolase; Swiss-Prot: sp|Q7XJJ7|FAAH_ARATH Fatty acid amide hydrolase; TrEMBL-Plants: tr|I1ME34|I1ME34_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0347100 LjG1.1_chr6 65983791 65992741 -
2 domain predictions
 –
LotjaGi6g1v0352400.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT5G09420.1 translocon at the outer membrane of chloroplasts 64-V; Swiss-Prot: sp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial; TrEMBL-Plants: tr|I1KUC8|I1KUC8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0352400 LjG1.1_chr6 66448544 66454373 -
2 domain predictions
 –