Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0524200
Transcript ID	LotjaGi3g1v0524200.1
Related isoforms 1	LotjaGi3g1v0524200.2
Lotus japonicus genome version	Gifu v1.2
Description	Translation initiation factor; TAIR: AT4G38710.2 glycine-rich protein; Swiss-Prot: sp\|Q9SZP8\|IF4B3_ARATH Eukaryotic translation initiation factor 4B3; TrEMBL-Plants: tr\|A0A1J7H7M2\|A0A1J7H7M2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0524200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:94117203..94120912) extracted from Lotus japonicus Gifu genome v1.2.

AACTGAAATACAAACATGCTCGTAGTAGACGGCTAGACGCTCCAAGCTTAGCCAAATAATCTTATCCTCTTTTACTCAAA TCAAATAAACTTTTAATCGTTATCTTATTTTTTTCCTAGTTTGTATTGATTTTTTATCAAATCCTAAAACCCTATTTTCT TTTTTCTTCAAATTTCAGTTTCCATTTCTTCAAACAAAAAATCTTACTAGTACTAATTTAGATGAAAGAAGGAACTAATC CAGACCGTTCATCAAAACATCATAGTCCAAACCTCCAGCATCCGATGTCGTATATAACATCTATCCACCGTTAGCGCCGA ACCTCTGTGTTTTGCTGCCAAAAAACGCAATCGAAAGAAACAGGGTTGCGAAGAAGAAGAAGAGAATGGCGGCTACTGTG TCTGCGTGGTCCAAGCCCGGAGCATGGGCACTTGATTCCGAGCAACACGAAGAGGAACTCCTTCAACAAAACGACATCAA AACCACCACAAACGACACCGCCGTTGCCGACTTCCCTCCCCTCGCCGTCGCCGCTGCCACCAAGCCCAAGAAGAAGAAGG CCCAGACTCTTTCCTTGGCTGAGTTCGCTGCCAAGCCTGACTCCCTCTTCACCCGCCACGAAGATCCCGTTGAGCTGCCA ACCGGTCCGCGCGAGCGAACCGCTGAGGAGCTCGACCGGACCCACCTCGGAGGTGGGTTCAGGTCGTATGGTGGTGACCG ATCCAACCGGAATTCCGGCGGCGAGGATTCCAGTTCGAGATGGGGTTCGTCTAGGGTTTCTGATGAGAGCCGGAGGAACG GTGGTTCGTTTAGGGATTCGAATCGCGAGATTGAGCCGTCGCGTGCTGATGAAGTTGATAACTGGGCTGCTGGGAAGAAA TCGACTGGGAATGGGTTTGAGAGGAGGGATAGGGAGAAGGAGAGAGGCGGGTTTTTCGATTCGCAGTCGCGTGCTGATGA ATCGGATAGATGGGTTTCGAGTAAGAGCTTTGCCCCGTCGGAGGGGCGGAGGTTTAGCTCCGGTGGTGGGGGAGGGTTTG AGAGGGAGAGGAAGGTAGGGTTTGGTACCAGTGGTGGTGCAGATTCGGATAATTGGAACAAGAAGAAAGGTGAATTCAGC GTTGGGAGTGAGAGAACTGAGAATGTTGGTGTTGGTGGTGGCGGCGGTGGGTTTGAGGGGGAGAGGAAGGTGGGGTTTGG TACCAGCGGTGGTGCGGATTCGGATAATTGGAACAAGAAGAAAGGGGAATTCAGCGTTGGAAGTGACAGAACTGAGAGTG CTGGTGTTGTTGGTGCAAGGCCGAGGCTTGTGCTGCAACCTCGGTCACTGTCGGCGAGTAATGAGACCGAGGAAACTGGT CCTGGGAAAGTGGGGAAGCCTAAAGGTGTGAACCCCTTTGGAGAGGCGAGGCCGAGGGAGCAGGTTTTGGCTGAGAAAGG GCAAGATTGGAAGAAGATTGATGAGCAGCTCGAGAGCGTGAAGATTAAGGAGACAGTGGATTTGCCTGTGAAAAAGGGTT TTGGATCTAGCAATGGAGGTGCTAGATTGCCAGAAGAGAAGACTGAGAGGAGTTGGAGGAAGGCTCTGATTGATGATGTT CGTCCAAAAAGGTTTGTTAAGAATTTCAAACCATCATGGTTGTGGTTACCTTTATTATTTGTTAATGATATTAGCTATTA AGCTTTGTTACTTGCTTCATGCATCTTTTATGCTAATTTGAAGATGGGGTGTTTCTGACTACAATGAGCTTCTTTTGATA GTGCTGACTCAACACTCACCTTCTAGCTGATACCAAAAGCTGGAAACTTAGTGAACAAATGGCTTGGGGCTGTTAATTTG CATGTTGTGATGTGTGCTCAGCAATGTTCCATCCAACCTGTTGCTTCACTTTTGGCTTGCCTGTCAATAAATTCTGTGCT CATAAGTTCATTTGTGCATATGCTACTCTATGAAACGCAAATAAGATATGCTTATTTGAATAAATTTATCAGTGTTTGTT GAGATTTTAACAGTTTCTTAGCTTAGGTTCACACTGCATTTGATCTTGCATCCTGTCTTTATGTTGATTTTTTGGTTTAA GTGTATATAACGGTGCTGTTTCTCTTGAGGACATGCATTTTATGATGTTTTGGATCATTCAGCCAGCCTGATAATATACA TTGGTTGAAGATCCTAGCTCTATGCAAGTAGAGATTGTTATATGCTTCCGGGTGCATTATGTATAAGAGATTATTGTTCA TTCTATTCATGTTTTTACATTTTGGCCTTGATTAATGATGCACTCATCACTCACTTACATACTAAGCCTCATTTTTTAAT TAGGAAATAAAAAAATATCAACATATGATATCATGTGAGTGATTGACTCCATCATCAATTAGCCCAGTTTGAAATGTCAA TGTTGGAATGGAATTAGCATAATCCTACACCGTGTTTAGAGCATGCAACAAAATCTTATATGCAAGCGCTGGAGCTTGTT TCCTTGAATTATTTTGCCTATTTGACATACTAATAACGCTGCTGAGCTTCTTACCCTGTTAATGCAGTGCTGAGAAAGTG GAGGAAGAACACGTTGAAGAAAACTGAAGAGCTCTCAATTACTTTTATCTCTGCAGACTGATTAGCGAGAGTTGGAAAAG AAAATTGAACATCAAAAACTTAATTTTTTTGTTTCCATTGAAGTTTTGTCTTCAATTATGATATGTTTTATTGTGAAACA CTATACGGAAACTGTTGAAGACATTTTTGATAGGGATGCTGGTAGCTTAGGCAGTCTTAGTTTTTATGGCTATGTTTGTA GCTGAATGTCGCCGAAGTTTGGTTTTGATTTTCACCTTTCATATTCTGTATACGCTTAGGCGGTGAACTGCCGATTTTGG TGTCTTATGTTTTCCTCGTTCCCCTTCTATGTTCAATGATATTTATGTTTAATATTTGTATGCCTATTGGATTGTGAGCT CCAAATATTCAGATTCTTGCCATGTTTTTCTCTAAAGAGAACATGGGTTTTATTTTTCCATAAGATAACATTGTGCAACG GATGCTTGGCTGGTTACCTTGTAACATAGTAAAGTGTTGTGAACATAATAGCTCGTATAGTCTATTTGCAAAGTAACTTT CTAATTTGTAATTTCACTAAGTCAAAGTCCTAAGCCTAACACTTTGAGGGCATACTAAGTATGTTTGGAACTGCGTCCAA TTCACTATGAACCCCTGTATATTAGAAAGCTCCTATATGAAGATTTAGAAAAAAACTAAACATGTGCTTAATGAATGTAG ACACCAATGTAAGCATCAAGTGCAGCCCTCTGGAATTCGCCAGTTAATTCAACCATGAAGAAGCTGATTCAATTGTATTA TGATATGAGTTCGCCATATTTATTCTCCTGTTTCCTGATGAATACTGTGGGAGAATGAGCATTGATGTCAAAGGTGGGTT GGAATGTTAGATGTGGTGCCTTGGACAGTCATTGTTCCTCTGCTACCTTGGGTATGTCTTACGATTTATTTTCAACTTTG GCATTGGATTGGAAGGAAATTTCAAGCATCTGTCATGTGTGTTCACGCTACAGTACTTGAATGACATGGTTTTGGGCATT ATCTGTCTGTCATGGGTTCTAGTTGGGATTTTGACCTTTGCCTGTATAGTGTGGGCTTTATCGTACTGTAACTGTATTTA CTGTAAGGGCTATATGCAAGTAACTCTGAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0524200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGCTACTGTGTCTGCGTGGTCCAAGCCCGGAGCATGGGCACTTGATTCCGAGCAACACGAAGAGGAACTCCTTCA ACAAAACGACATCAAAACCACCACAAACGACACCGCCGTTGCCGACTTCCCTCCCCTCGCCGTCGCCGCTGCCACCAAGC CCAAGAAGAAGAAGGCCCAGACTCTTTCCTTGGCTGAGTTCGCTGCCAAGCCTGACTCCCTCTTCACCCGCCACGAAGAT CCCGTTGAGCTGCCAACCGGTCCGCGCGAGCGAACCGCTGAGGAGCTCGACCGGACCCACCTCGGAGGTGGGTTCAGGTC GTATGGTGGTGACCGATCCAACCGGAATTCCGGCGGCGAGGATTCCAGTTCGAGATGGGGTTCGTCTAGGGTTTCTGATG AGAGCCGGAGGAACGGTGGTTCGTTTAGGGATTCGAATCGCGAGATTGAGCCGTCGCGTGCTGATGAAGTTGATAACTGG GCTGCTGGGAAGAAATCGACTGGGAATGGGTTTGAGAGGAGGGATAGGGAGAAGGAGAGAGGCGGGTTTTTCGATTCGCA GTCGCGTGCTGATGAATCGGATAGATGGGTTTCGAGTAAGAGCTTTGCCCCGTCGGAGGGGCGGAGGTTTAGCTCCGGTG GTGGGGGAGGGTTTGAGAGGGAGAGGAAGGTAGGGTTTGGTACCAGTGGTGGTGCAGATTCGGATAATTGGAACAAGAAG AAAGGTGAATTCAGCGTTGGGAGTGAGAGAACTGAGAATGTTGGTGTTGGTGGTGGCGGCGGTGGGTTTGAGGGGGAGAG GAAGGTGGGGTTTGGTACCAGCGGTGGTGCGGATTCGGATAATTGGAACAAGAAGAAAGGGGAATTCAGCGTTGGAAGTG ACAGAACTGAGAGTGCTGGTGTTGTTGGTGCAAGGCCGAGGCTTGTGCTGCAACCTCGGTCACTGTCGGCGAGTAATGAG ACCGAGGAAACTGGTCCTGGGAAAGTGGGGAAGCCTAAAGGTGTGAACCCCTTTGGAGAGGCGAGGCCGAGGGAGCAGGT TTTGGCTGAGAAAGGGCAAGATTGGAAGAAGATTGATGAGCAGCTCGAGAGCGTGAAGATTAAGGAGACAGTGGATTTGC CTGTGAAAAAGGGTTTTGGATCTAGCAATGGAGGTGCTAGATTGCCAGAAGAGAAGACTGAGAGGAGTTGGAGGAAGGCT CTGATTGATGATGTTCGTCCAAAAAGTGCTGAGAAAGTGGAGGAAGAACACGTTGAAGAAAACTGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0524200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAATVSAWSKPGAWALDSEQHEEELLQQNDIKTTTNDTAVADFPPLAVAAATKPKKKKAQTLSLAEFAAKPDSLFTRHED PVELPTGPRERTAEELDRTHLGGGFRSYGGDRSNRNSGGEDSSSRWGSSRVSDESRRNGGSFRDSNREIEPSRADEVDNW AAGKKSTGNGFERRDREKERGGFFDSQSRADESDRWVSSKSFAPSEGRRFSSGGGGGFERERKVGFGTSGGADSDNWNKK KGEFSVGSERTENVGVGGGGGGFEGERKVGFGTSGGADSDNWNKKKGEFSVGSDRTESAGVVGARPRLVLQPRSLSASNE TEETGPGKVGKPKGVNPFGEARPREQVLAEKGQDWKKIDEQLESVKIKETVDLPVKKGFGSSNGGARLPEEKTERSWRKA LIDDVRPKSAEKVEEEHVEEN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32091 View details on PTHR32091 Search for proteins/transripts with this domain View external data on PTHR32091	1	248	248	2.9E-109	IPR010433 Show description in modal box View details on IPR010433 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR32091:SF17 View details on PTHR32091:SF17 Search for proteins/transripts with this domain View external data on PTHR32091:SF17	1	248	248	2.9E-109	–
Pfam	PF06273 View details on PF06273 Search for proteins/transripts with this domain View external data on PF06273	7	215	209	2.6E-33	IPR010433 Show description in modal box View details on IPR010433 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	67	343	277	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	72	101	30	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	110	129	20	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	130	160	31	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	168	196	29	-	–
Pfam	PF06273 View details on PF06273 Search for proteins/transripts with this domain View external data on PF06273	184	366	183	1.5E-18	IPR010433 Show description in modal box View details on IPR010433 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR32091:SF17 View details on PTHR32091:SF17 Search for proteins/transripts with this domain View external data on PTHR32091:SF17	253	416	164	2.9E-109	–
PANTHER	PTHR32091 View details on PTHR32091 Search for proteins/transripts with this domain View external data on PTHR32091	253	416	164	2.9E-109	IPR010433 Show description in modal box View details on IPR010433 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	375	421	47	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	388	421	34	-	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	415	421	7	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003743 View details of GO:0003743 AmiGO InterPro QuickGO	Molecular function	Translation initiation factor activity	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.	Subterm of View details of GO:0008135

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0524200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0524200.1