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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0525600 |
| Transcript ID | LotjaGi3g1v0525600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT1G50300.1 TBP-associated factor 15; Swiss-Prot: sp|Q9AST1|TAF15_ARATH Transcription initiation factor TFIID subunit 15; TrEMBL-Plants: tr|A0A072UXF8|A0A072UXF8_MEDTR RNA recognition motif (RRM) superfamily protein; Found in the gene: LotjaGi3g1v0525600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94235671..94239361) extracted from Lotus japonicus Gifu genome v1.2.
TTAAGACCCCATGGCTGGGAAATTCGCCACTGCTAATGGGTCTATCTATGTCTGCAATTTGCCTTTTGGGACTGATGAAG ATATGTTGGCTGAATATTTTGGCACTATTGGAGTAATCAAGGTATGCACCATGTCTGTGTTTCTATTTTTCAAATTCGCG TAATCTTAGTGTCCATATTTCTTTCATTTTTTAGGGTAAAAGAAATGAACACGTTAACTCATATTTTTAATATTTGGGAT TTTTATTATGTTCTGTTGTTAATATACGACATGTCGACATTGACTAGAGATATGGCCTACTAAGTCCTTATAAATAGCAG GGAATCCTCACTTCTAAGATAGCTTTTAGGGAGTTAAGCTCAGACCTGAATTCTAAGATGTATGTTCAGGTTGGAATTTT ATGTTTAGATGTAAGACGTATGCGAATAAAATTAGTTTATTTGGGATTCTCTACATGAAGACTTAAAGTGAACATTAGTT TGAGATTTTTAATGAATGATTAATTTGATTTTTGTTGTGTTTCTCTCTTGTCTTCATGTGGTTCCTGTTTTTCTGTGTGC CATGTTCTGTTTCGAAGCTATTAGTCCTAGTTCATTAAGGATTTATGCTTTGCAGAAAGATAAACGTACAGGGAGACCGA AAATATGGTTATATCGAGACAAAGAGACTCATGAACCAAAGGGGGATGCTACTGTGACGTACGAGGATCCACATGCTGCT TCGGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGTAATACAATTGGAGTTTTTATAGCAGAGTCCAAAAACAA AGATGATCAAGTAGCAGATCCAGTTGTAGCTGTAGCTGTGCCTGTAGCTGTTGATGTTGTTGGTGAACTAGAGGAAACTG ACAGGGATATTAATGGTGGTAGTGGAAGAGGTAGAGGTCAACATGATGCCTCAGGCAAACCCTGGCAACAAGAGGGCGAT TGGATGTGTCCGAATACAAGGTCTGTGATATGAGATTGGTGAGCAGCTCTTTCTTGCTCTTGCATTCACTGTTTCTGTCA TTGTAGATGATTTGTTTTAGAGAAATAACAACTTTTTCTCATCATTGCAGTTGCTCCAATGTGAATTTTGCCTTTCGCGG TGCGTGTAATCGCTGTGGAAGTGCTCGACCTGCTGGTGCTGCTGGTGCTGGAGGGGGTGGGGGCCGTGGCAAGGGACGTG CTGGACAAGAGGCAGGTGGTATTGGCCGTCCAGCTGGTGGAGGGCTCTTTGGTCCCAATGACTGGCCTTGTCCAATGTAC GATTGTGTCACACTGTCCTTGTGTTCTCTTTTCTTTTGTGTCTGGTTTCTTTATAACTAGGCTCTTTTTCTTTTTTATTT TCTTTTTGCTTAGGTGTGGCAATATCAACTGGGCAAAACGGATGAAATGCAATATCTGCAATACAAATAAGCCTGGGCAT AATGAGGGTGGTGTAAGGTATTATATTTGATACTTTTGATACCTTCTAAATGTTAGTCAAAATACATATTATATCATTAC CCTCATGCAACTATAAGGAGAAAATACATTTTTTTGTTGTAAAAAAGAAATATTTATTCAAACAAATGCTCTCTTTTTAC ATTTTTTAAAATGAATTCAAACTGACATAAAAGCTGTGATCTGTGAAACAATTTTAAAAAAGAAATTACCTTAAAATACA CATGTAAGAGATAGAAATGTATGACTATGTTGAACTGCCAAATTTCCCTTTTCTTTCAATCATAATATAAAAGGCACGGG TCTCTAAAAAAGGCATGGCAGTAAGAAATCCCCTTTCTATGGTAGTAGAGATACATGTCTATGTATTTGTGTGATTATCA AATTTTATGCAGTTACACACTTACAAAAATATCTTGCCATATGTACTAAACGTGGTTTGTCTATTTCCATTGTACGTGTG ATTTCATGGCAATTGAACATTTTAGTCCACTGAAAAGTAAGAAATTAGTTTTAGAGGGCTGGTATATCTATGTTAAATGT TTATTTCAATTGGTGCATCTTTTCCCGCTTAACAATTTGATGTGTGGGAAAAATTGAAGAAGTATTATATGCTACCTTAC ACGATTAGACAACAACTATGGCCGTGGCCAAGTTGTAATATAAGTCACGTGAGCGAGGTCTTAATTATTGCATTGTGTTT ATTTGTCATTGCAGAACAACAGTTCGCCAATAAACTTTTCAAATAGAAATGTAGCTTAGAATTTGTTCGTCAGAATATTA GGAAGATATTTTTTACTATCATTTCACATCGTAAAGCATCTTGTGATGCCAAATGTCAGCAAAGCATCTTTGCAAGCAAA TTATTGAGGACATTTTTCACCATCAGTTCATATTCGTTATCCCTTGTGTGCTTTGATGAGTGTGTCTGTGTGGTTTGTAT GACCATTATTTTTTATTTTGGTTCCGAACTAGAAAATGTTGTATTTACGAGACCATAATTTCCCCCTTCATTTTGGTGTC TTCCTTTACTATGCAAAATTCCTTTTTTAGTATTATTTTTGAAATTTCCTTGCTAACTTTGTGTTATTCTTTCTAATTGA GCAGAGGAGGGCGAGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATTGAAGAAACTAAACGTCGTAGGCGGGAGGCT GAAGTAAGATTGTCTAAAAGTCAGATCATACATTCTATTAATGAGACCTTGGTTTTATAATCTTTTCTTTACTTTCAGGA TGATGGGGAGCTGTATGATGAATTTGGAAATCTTAAGAAGAAATTCCGTGCTAAAACACAGCAAGCTGAAGCTGCACGTG TGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGAACTAGGTATTGTTGCATATCTTGAATGGTTTATTCTCCGT AAATTTATTAGAGCATGCTGAAGCTGCACCAGGGCTTCCTGAGCATGTCAAGCTAAACCCCCTGCATTCTCCACCTCACT TCTTTACCCACATTTTTCGTTGCATGGTTACATTTTTAAATGATCATTATGGGCCTGATGGAATTCACATTTTCAAATAC ACATTTTCCTAAAATCATGATTCATAATTCCATATGTCTTCTTTTTCCTTTTGTTTTTTTTCTATTTCATTTCTCTTTTT TGTCATTCTTGCTCGACAGGCCTTATGCAACCGTTTGATCATGTGACTTTTTACTTTTAAACCCTACGTACTAAATCAAA ACTGCTTATAGGTTGTCTTGATGTTTTTATAAATGTACTGGTTGATTGTCCAGATTTTTGAATTTCAATGTCCTGCATAA ATCTAAACTGAACTGGTTGCTGGTTTTGCTTGTCGATAAACGTTTAATTTAGTTGTTTACCCAACCAAACACACCCTAAA TGGTTTTGTTATGGTATGAAATTCTGAATTGTTGATGTGTTTGTATGAAATTCTGAATTGTTTGGGCCTGCCATAACTAA GTTACTGTGCTATAATACTTATGGCAGGGATTGTCAGGGATGCTAGAGAAAGAAGTAGAGACAGAGGAAGGGAACATAAT GATGGAGAGAACAGGAACAACAGCAGAGAGCGAGATGAAAAGGAGAGGCATAGCAGTCGGAACAGAGAGAGGGACAGGGG AAGAGATCGAGACTGGGATCATGTTGATCGTGATAGAGACTATGGGCGAGACCGGGATCGGGATCGGGATCGACATAGAC ACCGTTATTAA
CDS sequence (LotjaGi3g1v0525600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGGAAATTCGCCACTGCTAATGGGTCTATCTATGTCTGCAATTTGCCTTTTGGGACTGATGAAGATATGTTGGC TGAATATTTTGGCACTATTGGAGTAATCAAGAAAGATAAACGTACAGGGAGACCGAAAATATGGTTATATCGAGACAAAG AGACTCATGAACCAAAGGGGGATGCTACTGTGACGTACGAGGATCCACATGCTGCTTCGGCTGCTGTTGAATGGTTTAAC AACAAAGATTTTCATGGTAATACAATTGGAGTTTTTATAGCAGAGTCCAAAAACAAAGATGATCAAGTAGCAGATCCAGT TGTAGCTGTAGCTGTGCCTGTAGCTGTTGATGTTGTTGGTGAACTAGAGGAAACTGACAGGGATATTAATGGTGGTAGTG GAAGAGGTAGAGGTCAACATGATGCCTCAGGCAAACCCTGGCAACAAGAGGGCGATTGGATGTGTCCGAATACAAGTTGC TCCAATGTGAATTTTGCCTTTCGCGGTGCGTGTAATCGCTGTGGAAGTGCTCGACCTGCTGGTGCTGCTGGTGCTGGAGG GGGTGGGGGCCGTGGCAAGGGACGTGCTGGACAAGAGGCAGGTGGTATTGGCCGTCCAGCTGGTGGAGGGCTCTTTGGTC CCAATGACTGGCCTTGTCCAATGTGTGGCAATATCAACTGGGCAAAACGGATGAAATGCAATATCTGCAATACAAATAAG CCTGGGCATAATGAGGGTGGTGTAAGAGGAGGGCGAGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATTGAAGAAAC TAAACGTCGTAGGCGGGAGGCTGAAGATGATGGGGAGCTGTATGATGAATTTGGAAATCTTAAGAAGAAATTCCGTGCTA AAACACAGCAAGCTGAAGCTGCACGTGTGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGAACTAGGGATTGTC AGGGATGCTAGAGAAAGAAGTAGAGACAGAGGAAGGGAACATAATGATGGAGAGAACAGGAACAACAGCAGAGAGCGAGA TGAAAAGGAGAGGCATAGCAGTCGGAACAGAGAGAGGGACAGGGGAAGAGATCGAGACTGGGATCATGTTGATCGTGATA GAGACTATGGGCGAGACCGGGATCGGGATCGGGATCGACATAGACACCGTTATTAA
Protein sequence (LotjaGi3g1v0525600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGKFATANGSIYVCNLPFGTDEDMLAEYFGTIGVIKKDKRTGRPKIWLYRDKETHEPKGDATVTYEDPHAASAAVEWFN NKDFHGNTIGVFIAESKNKDDQVADPVVAVAVPVAVDVVGELEETDRDINGGSGRGRGQHDASGKPWQQEGDWMCPNTSC SNVNFAFRGACNRCGSARPAGAAGAGGGGGRGKGRAGQEAGGIGRPAGGGLFGPNDWPCPMCGNINWAKRMKCNICNTNK PGHNEGGVRGGRAGGYKELDEEEIEETKRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARVLPGSGRAGWEVEELGIV RDARERSRDRGREHNDGENRNNSRERDEKERHSSRNRERDRGRDRDWDHVDRDRDYGRDRDRDRDRHRHRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 388 | 386 | 5.8E-187 | – | |
| PANTHER | 3 | 388 | 386 | 5.8E-187 | – | |
| Gene3D | 9 | 94 | 86 | 2.5E-22 | ||
| ProSiteProfiles | 10 | 96 | 87 | 11.998 | ||
| SUPERFAMILY | 10 | 99 | 90 | 3.63E-21 | ||
| SMART | 11 | 92 | 82 | 1.1E-13 | ||
| CDD | 12 | 94 | 83 | 1.28731E-54 | – | |
| Pfam | 12 | 89 | 78 | 1.7E-10 | ||
| MobiDBLite | 123 | 150 | 28 | - | – | |
| SUPERFAMILY | 143 | 181 | 39 | 8.24E-13 | ||
| Gene3D | 143 | 182 | 40 | 2.9E-14 | – | |
| ProSiteProfiles | 149 | 180 | 32 | 10.06 | ||
| Pfam | 150 | 179 | 30 | 4.1E-6 | ||
| SMART | 151 | 177 | 27 | 2.6E-4 | ||
| ProSitePatterns | 153 | 174 | 22 | - | ||
| SUPERFAMILY | 207 | 243 | 37 | 4.32E-10 | ||
| Gene3D | 211 | 243 | 33 | 2.5E-10 | – | |
| ProSiteProfiles | 213 | 242 | 30 | 9.461 | ||
| SMART | 215 | 239 | 25 | 6.5E-6 | ||
| Pfam | 216 | 242 | 27 | 1.5E-4 | ||
| ProSitePatterns | 217 | 236 | 20 | - | ||
| MobiDBLite | 244 | 277 | 34 | - | – | |
| MobiDBLite | 254 | 277 | 24 | - | – | |
| Coils | 257 | 277 | 21 | - | – | |
| MobiDBLite | 320 | 391 | 72 | - | – | |
| MobiDBLite | 320 | 384 | 65 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0525600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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