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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0525900 |
Transcript ID | LotjaGi3g1v0525900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Delta(24)-sterol reductase; TAIR: AT3G19820.1 cell elongation protein / DWARF1 / DIMINUTO (DIM); Swiss-Prot: sp|P93472|DIM_PEA Delta(24)-sterol reductase; TrEMBL-Plants: tr|A0A151TMT0|A0A151TMT0_CAJCA Cell elongation protein diminuto; Found in the gene: LotjaGi3g1v0525900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94258847..94260998) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGGATCTTGAGGCTCCGCTGCGCCCCAAGAGGAAGAAGGTTTGGGTGGACTATTTTGTCAAGTTTAGATGGATCCT TGTCATTTTTGTGGTTCTTCCCATTTCCTTCACCATTTACTTCCTCATATACCTTGGGGATATGAAATCTGAGTGGAAGT CCTTTAAGACGCGCCAGAAGGAGCATGATGAGAATGTCAAGAAGGTTGTCAAGCGTCTCAAACAGAGGAATCCGTCCAAG GATGGTCTTGTCTGCACGGCTCGTAAGCCCTGGATTGCGGTTGGGATGCGGAATGTGGACTACAAGAGGGCTCGCCATTT TGAAGTTGATCTGTCTGCTTTCCGTAACATACTTGAGATCGACCAGGAACGGATGATTGCTAGGGTTGAGCCTCTTGTTA ACATGGGGCAGATCACCAGGGTGACTGTGCCGATGAATCTTGCCCTCGCTGTGGTTGCGGAGCTGGACGATCTTACTGTT GGTGGCCTCATTAACGGCTATGGGATCGAAGGAAGCTCCCACTTATATGGCCTGTTTGCTGATACCGTTGTGGCCTTTGA AGTTGTTCTAGCAGATGGTTCCCTTGTTAGAGCCACCAAGGAGAATGAGTACTCTGATCTATTTCATGCTATTCCTTGGT CTCAGGGAACTCTTGGGTTTCTTGTTGCTGCTGAGATCAAGCTTATACCCATTAAGGAGTACATGAAGTTGACTTATCAA CCTGTTGTTGGTAACCTGCAAGAGATTGCACAGGCATATACTGATTCTTTCTGTCCCAGAGATGGAGACCAGGATAATGA AGAGAAGGTTCCAGACTTTGTTGAAGGAATGGTTTATACACCAACAGAAGCTGTGATGATGACAGGGAGATATGCTTCAA AAGAGGAGGCCAAGAAGAAGGGGAATAAGATTAACAGTGTGGGGTGGTGGTTCAAACCCTGGTTCTATCAACATGCACAG TCAGCACTGAAGAAAGGATTGTTTGTAGAATACATTCCTACCAGAGAATATTACCACAGGCACACAAGGTGTTTGTATTG GGAGGGAAAGCTTATCCTTCCATTTGGTGATCAATTTTGGTTTAGGTATCTGTTTGGCTGGTTGATGCCACCCAAGGTTT CTCTGCTCAAGGCAACTCAGGGCGAAGCTATAAGAAACTATTACCATGATATGCATGTCATCCAGGACATGCTTGTTCCT TTGTACAAGGTGGGAGATGCGATGGAATGGGTTCACCGTGAGATGGAGGTACTTTTTTCCTTTTATTAACCTTAATAACA CTTTAAATGTTTTTTTTCAAACATTATTTGTTCAAGGGTAAGTCATTTAAAACTTAAAATTCTAGTTTCATACGTGCAAA AAGCTCATGCTAGGGCTAAGCTCTCACGGCTGTTTTGCAGTTAAAGCCCATTTTCATTTTCCATTATGATCTATCATAAA GTTACTGGTCCCATGGTCTTTTTTAACTCGTGAAGGAGTTTTACCTTTTTAGAAGTTATTGAGTTTTCTGCTTTCCCAAG TTTCTGGTGTTACTTATTGTCTGATAAGTAGTGCTAATTTCATAAAAATTATGCTATTATTTATTTCAATTCAAGCTGAT ACATCAGTAAGTTCTCTCAGGGATCCAGTTTTCATATATAATTCAGTTGGTGCTGGCCTGCATTTTGTTTCTTATTAGTG ACTGTAAATATATTAGGTATACCCCCTTTGGCTATGCCCACACAAGTTGTTCAAGCTGCCAGTCAAGACCATGATTTACC CAGAACCAGGCTTTGAACTGCATCGCAGGCAAGGAGACACACAAACTGCTCAAATGTACACAGATGTTGGAGTTTACTAT GCACCAGGTCCTGTTTTAAGGGGTGAGGTATTTGATGGCGCAGAAGCAGTGCGTAAGATGGAGGACTGGTTGATTGAAAA TCACGGTTTCCAGCCACAGTATGCTGTGTCTGAGCTGTCCGAGAAAAGCTTCTGGAGAATGTTTGATGCAGGTCTATATG AGCATGCTAGGAGGAAGTATGGAGCTATTGGAACCTTCATGAGTGTGTACTACAAATCAAAGAAAGGCAGGAAGACTGAG AAGGAGGTGCAGGAAGCGGAGCAAGCACACCTTGAAACTGCATATGCAGAAGTTGATCAACCAGTAGACTGA
CDS sequence (LotjaGi3g1v0525900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGATCTTGAGGCTCCGCTGCGCCCCAAGAGGAAGAAGGTTTGGGTGGACTATTTTGTCAAGTTTAGATGGATCCT TGTCATTTTTGTGGTTCTTCCCATTTCCTTCACCATTTACTTCCTCATATACCTTGGGGATATGAAATCTGAGTGGAAGT CCTTTAAGACGCGCCAGAAGGAGCATGATGAGAATGTCAAGAAGGTTGTCAAGCGTCTCAAACAGAGGAATCCGTCCAAG GATGGTCTTGTCTGCACGGCTCGTAAGCCCTGGATTGCGGTTGGGATGCGGAATGTGGACTACAAGAGGGCTCGCCATTT TGAAGTTGATCTGTCTGCTTTCCGTAACATACTTGAGATCGACCAGGAACGGATGATTGCTAGGGTTGAGCCTCTTGTTA ACATGGGGCAGATCACCAGGGTGACTGATAATGAAGAGAAGGTTCCAGACTTTGTTGAAGGAATGGTTTATACACCAACA GAAGCTGTGATGATGACAGGGAGATATGCTTCAAAAGAGGAGGCCAAGAAGAAGGGGAATAAGATTAACAGTGTGGGGTG GTGGTTCAAACCCTGGTTCTATCAACATGCACAGTCAGCACTGAAGAAAGGATTGTTTGTAGAATACATTCCTACCAGAG AATATTACCACAGGCACACAAGGTGTTTGTATTGGGAGGGAAAGCTTATCCTTCCATTTGGTGATCAATTTTGGTTTAGG TATCTGTTTGGCTGGTTGATGCCACCCAAGGTTTCTCTGCTCAAGGCAACTCAGGGCGAAGCTATAAGAAACTATTACCA TGATATGCATGTCATCCAGGACATGCTTGTTCCTTTGTACAAGGTGGGAGATGCGATGGAATGGGTTCACCGTGAGATGG AGGTATACCCCCTTTGGCTATGCCCACACAAGTTGTTCAAGCTGCCAGTCAAGACCATGATTTACCCAGAACCAGGCTTT GAACTGCATCGCAGGCAAGGAGACACACAAACTGCTCAAATGTACACAGATGTTGGAGTTTACTATGCACCAGGTCCTGT TTTAAGGGGTGAGGTATTTGATGGCGCAGAAGCAGTGCGTAAGATGGAGGACTGGTTGATTGAAAATCACGGTTTCCAGC CACAGTATGCTGTGTCTGAGCTGTCCGAGAAAAGCTTCTGGAGAATGTTTGATGCAGGTCTATATGAGCATGCTAGGAGG AAGTATGGAGCTATTGGAACCTTCATGAGTGTGTACTACAAATCAAAGAAAGGCAGGAAGACTGAGAAGGAGGTGCAGGA AGCGGAGCAAGCACACCTTGAAACTGCATATGCAGAAGTTGATCAACCAGTAGACTGA
Protein sequence (LotjaGi3g1v0525900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDLEAPLRPKRKKVWVDYFVKFRWILVIFVVLPISFTIYFLIYLGDMKSEWKSFKTRQKEHDENVKKVVKRLKQRNPSK DGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILEIDQERMIARVEPLVNMGQITRVTDNEEKVPDFVEGMVYTPT EAVMMTGRYASKEEAKKKGNKINSVGWWFKPWFYQHAQSALKKGLFVEYIPTREYYHRHTRCLYWEGKLILPFGDQFWFR YLFGWLMPPKVSLLKATQGEAIRNYYHDMHVIQDMLVPLYKVGDAMEWVHREMEVYPLWLCPHKLFKLPVKTMIYPEPGF ELHRRQGDTQTAQMYTDVGVYYAPGPVLRGEVFDGAEAVRKMEDWLIENHGFQPQYAVSELSEKSFWRMFDAGLYEHARR KYGAIGTFMSVYYKSKKGRKTEKEVQEAEQAHLETAYAEVDQPVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 142 | 142 | 7.3E-257 | – | |
Phobius | 1 | 22 | 22 | - | – | |
PANTHER | 1 | 142 | 142 | 7.3E-257 | ||
TMHMM | 21 | 43 | 23 | - | – | |
Phobius | 23 | 46 | 24 | - | – | |
Phobius | 47 | 445 | 399 | - | – | |
PANTHER | 145 | 439 | 295 | 7.3E-257 | – | |
PANTHER | 145 | 439 | 295 | 7.3E-257 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0525900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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