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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0526800 |
| Transcript ID | LotjaGi3g1v0526800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone DnaJ; TAIR: AT4G10130.1 DNAJ heat shock N-terminal domain-containing protein; Swiss-Prot: sp|Q54CI5|DPH4_DICDI DPH4 homolog; TrEMBL-Plants: tr|A0A151TMW8|A0A151TMW8_CAJCA Diphthamide biosynthesis protein 4; Found in the gene: LotjaGi3g1v0526800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94315575..94317263) extracted from Lotus japonicus Gifu genome v1.2.
AATATCTCAGTTTTCCCCAATTGAACAAAACAAAGACGGAGATTTTGATTACTCGCAAAATTAGGGTTGGATTGCTGCGA TTCCGTTTGCTGCGAGATTGAATCTTCGCCAGGTATGCTTTGCTATTTTTGATTCAACTGTTGAATTACAATTTAGTTGC ATTGCATACTTTCAATTCTCTAGGGTTTCAAGTTTGTTTTCATTTGTCTGTGCGTAGAAAATACTGTTAAGTGAAAGCTC TTAGAGTGCTGTACAATGTAGAGAGTTGATTGGTTGATTTGTGCTCCTGGTCTTAATATTTCATTATGATTGGGTTGAAG GCGCGCAACGGTAAGGTTACTGTCATGTGAATGTGCACTCACAGGTTTGAGCTGTGGACTGTCTACATTAGATTCTCAAA GTGGGTCCGGCCTCTCTCGGGACCTTGCATATAGCATGAGCTTTATAGCACGAGGTTTTTAGCACTGAATGTTGATGGTT AGATTGGTTTTGTGACCTCAGACTTTATTTTGGATGATTGAGATATAGTTCCAAGGTCGCTAGGCTTGCAGCAAAATCTT TTCCTTGATCAATTTTTTTGATTATTTAGAGTCTTTCAAAATGGTGAATATGAATCTTGGTTAGTATTTCGGGTTTTATT TTCTTCTGGTTTGTGGTCATTAGATCTCAGAGACTATAACAACTTGCTGCATTTTGAGAAATTACTATACAGTAAAGTAA AATAGGTTGAATTGGAGTTCAGAATAACATTAATTTAAAATACACTCCAAATAAAAGGATTCCAATTGGATGGATTTTAA GATTTGTTCCAAACAATAAAATTTGCGTTAATTATGGTTTGTGTAGTTATAATTAGACCAGTGCATTTCATGTGATTATT GTATGACCTTTTGCTTGTTTCTGATGTTTCTCTGCTGAATGCATACAGCCTTGCACTCTTAGTAATTTTGAGAACTAGCA ACATCCAAAAATGCTCCTGGATAGGTATGGCATTCAGGAAACCCATTATGAGGTTCTTAATGTCAAGGAAGATGCAAATT ATACAGAAATTCGTGCCGGTTACCGAAGTGCTGCACTCAGTTTACATCCTGATAAGCTATTGAAGACACCCGAGACATCC AGCAGTGATCAAACAACTGGAGAGAGATTTCTCAGAGTACAAAAGGCATGGGAAGTTCTAAGCGATTCGAGCTCCCGTTC ATCGTATGATAATGAGTTGAAAAGCTCAAGGCGGGATAGGGATGCTTTGGCCGCTGAAGTTGCAGAAGATTTGAGCTTAC ATGATATGATAGCTGAAGATGCTGATGAAGCATTGGAACTGTTTTATCAGTGCCGCTGTGGTGATTACTTCTCTATAGAC TCATTGGAATTGCAGAAAATGGGGTATTCCTTATTCAGGGAAGGAAGCAACATATCTATACTCAATGTTGATACTTTACC AGGATCAGTGATTCTTCCGTGTGGATCTTGTTCATTAAAAGCTCGTTTGGTACTCAGTACGGATGACCATTGAAATTATC AACATTTTTTGTATGAACTAGTAAGTTACCCGTGCAGATGCACGGGTCGCGGTCGGTCGACCGCGATCAATTTTTCTCAA CAATTTTTATTTAAAAAATCTATTTATAATTAAACATTCATTATAATCGTTTTAAAAAATTGTAATTTTTGTTAGTATAG AAATTTTCC
CDS sequence (LotjaGi3g1v0526800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCTGGATAGGTATGGCATTCAGGAAACCCATTATGAGGTTCTTAATGTCAAGGAAGATGCAAATTATACAGAAAT TCGTGCCGGTTACCGAAGTGCTGCACTCAGTTTACATCCTGATAAGCTATTGAAGACACCCGAGACATCCAGCAGTGATC AAACAACTGGAGAGAGATTTCTCAGAGTACAAAAGGCATGGGAAGTTCTAAGCGATTCGAGCTCCCGTTCATCGTATGAT AATGAGTTGAAAAGCTCAAGGCGGGATAGGGATGCTTTGGCCGCTGAAGTTGCAGAAGATTTGAGCTTACATGATATGAT AGCTGAAGATGCTGATGAAGCATTGGAACTGTTTTATCAGTGCCGCTGTGGTGATTACTTCTCTATAGACTCATTGGAAT TGCAGAAAATGGGGTATTCCTTATTCAGGGAAGGAAGCAACATATCTATACTCAATGTTGATACTTTACCAGGATCAGTG ATTCTTCCGTGTGGATCTTGTTCATTAAAAGCTCGTTTGGTACTCAGTACGGATGACCATTGA
Protein sequence (LotjaGi3g1v0526800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLDRYGIQETHYEVLNVKEDANYTEIRAGYRSAALSLHPDKLLKTPETSSSDQTTGERFLRVQKAWEVLSDSSSRSSYD NELKSSRRDRDALAAEVAEDLSLHDMIAEDADEALELFYQCRCGDYFSIDSLELQKMGYSLFREGSNISILNVDTLPGSV ILPCGSCSLKARLVLSTDDH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 178 | 177 | 2.4E-73 | – | |
| PANTHER | 2 | 178 | 177 | 2.4E-73 | – | |
| Gene3D | 5 | 98 | 94 | 3.9E-20 | ||
| SUPERFAMILY | 10 | 83 | 74 | 5.89E-18 | ||
| SMART | 10 | 75 | 66 | 2.9E-15 | ||
| ProSiteProfiles | 11 | 83 | 73 | 15.534 | ||
| CDD | 11 | 70 | 60 | 7.34766E-12 | ||
| Pfam | 11 | 80 | 70 | 1.6E-17 | ||
| PRINTS | 13 | 31 | 19 | 7.4E-10 | ||
| PRINTS | 31 | 46 | 16 | 7.4E-10 | ||
| PRINTS | 55 | 75 | 21 | 7.4E-10 | ||
| ProSiteProfiles | 97 | 176 | 80 | 13.547 | ||
| SUPERFAMILY | 98 | 179 | 82 | 4.58E-10 | ||
| Gene3D | 99 | 180 | 82 | 4.1E-7 | ||
| Pfam | 100 | 174 | 75 | 1.7E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0526800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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