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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0527700 |
| Transcript ID | LotjaGi3g1v0527700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA/RNA-binding protein KIN17; TAIR: AT1G55460.1 DNA/RNA-binding protein Kin17, conserved region; Swiss-Prot: sp|Q9ZVU5|KIN17_ARATH KIN17-like protein; TrEMBL-Plants: tr|A0A151U225|A0A151U225_CAJCA DNA/RNA-binding protein KIN17; Found in the gene: LotjaGi3g1v0527700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94414962..94417588) extracted from Lotus japonicus Gifu genome v1.2.
TATTGCACAATTTAGGACCAAAAGTAAAAATATATTAATAACATGACCACATCAAATTTTCTTTTGGATTCGATTCCACC CAAATTCACAAGGCGGTGCTCGCGGTTAGGGTAGTTTCCTCCGGTGGCGGTTTCCACAGCCAACCATCGCGTTTTCCATT CACTCGCTCAACAGTTAGGTACCTTGCTCATCTTCTACTATTCAATTTGATTCGATTCAATTATCTTTTTCTATTCAAAA TTCCTAGTTTGTTCTTCCTCTAATTTGAAGCTGAAATTGAAGTAATTCTATGGAATCATAGAGCCTTTCTGTATATTCAT AACTTTACATGAACTTCAAATTTATGGGACCTTGTAATTGTGATTGTGATCGAAGAAAGCGCACATATTGATTTGATTTG AATTGATTGACACGCGTTGTTTAGGGTTTCTGTAAATTTGGGAATTCAATTCTGTTTAAGATTTTTAGGGAATTTTTCGT TCTGTGTCTCACTGTTTATATTGTTCTGTTAAGCCTGGTTCAGCATTTCCCCAATTCTTGCATTTGAAATGTTATTTATA GTGTTGAATGAATTTGGTCTATTTCATTGCGGTGGTTGGAAACAAGTAATTCAATGCTAGTGAGGAATTTGATGACTTCA ACTGGAGATTAAGTTTAAAGGTATATCCAAGAAATTTTTAGTTGGAAATTATGTAGCTAAAGAGGAAAAGCTGTTAAGTG AGAGAACCTCATTTTCTGAGTTTAAATGAATATTCGAGAGATTGTCTATACATGTGGCAGCTTTATCAAGTTTTGCTCGT TTTCTTCATTCATTGCGTCCACCTTGCTTGTTATTCGAAACTGAAGTCACTTACATATTTCTATATGTCAATCACAGAAG GTAAAACAGATAGGTTCTAGTGCAAAGCAAATGTATTCATTTATCAGTGTACTTGTCATAGTTATCGGATATTTGCTGAT TATAGCTGTAGTTCAGATGCTTGCTAAAAAACTCTACTATTTCTTGTTCTAGTGTTTTAAGAATATTAGCTGTTGTTCTG ATGCTGATTTTGTTGCTGCTGATGATATTGCTGTTTTTGTGTTTTATGTTTTATTTTTTTTCTAACATAGTGTCAGTTTG TATAGGAGGAAGTAAGCACTAGGTGGGGTTACTTATAGCATTTTGACATTTCATCCAGATTTTCAATGGGGAAAAATGAT TTTCTCACACCTAAGGCAATTGCCAATCGAATCAAAGCAAAAGGACTGCAGAAGCTTCGGTGGTATTGCCAGATGTGCCA GAAGCAATGCCGAGATGAGAATGGGTTTAAATGCCACTGCATGAGTGAAGGGCACCAACGTCAAATGCAAGTTTTTGGGC AAAACCCAACTCGGATAATTGATGGCTATTCTGAAGAGTTTGAGAAAACATTCCTTGAGCACATGAAGCGCAGCCACCGA TTCAGCCGCATAGCTGCCACTGTCGTGTATAATGAATACATAAACGATAGACACCACGTTCATATGAACTCCACTGAGTG GGCTACGCTTACTGATTTTGTAAAGTACTTGGGTCGAACTGGCAAGTGCAAGGTTGATGAAACACCCAAGGGATGGTTCA TAACATACATAGATAGAGATTCAGAAACCCTTTTCAAGGAGAAGATGAAGAATAAGAGAATCAAGGCAGATATGGCAGAT GAAGAAAAGCAAGAGAGGGAGATAATGAAACAGATTGAAAAGGCTGAGCAATTGATGCAGCCACCCAATTCTGATTCTGA TCAGACTTCACTAGCTGAGCCTCCAAGGGAATTTAATGTAGAGGATGGAGTTAAGATAGGATTTTCTCTTGGGACATCGG CAAGACCTGGGACCAAGGAAAAACTTGAAGAATCGAGGGTGACATTTGATGAGGTTGGTGAAGAGAAAAATGAGGAAAGA AAGAATGGAAACAATTTGAAGAGGAAAGAAATTGGTGGTGGAAAATCAGCTTTGGATGAAATGATGAGGGATGAAGAGAA GAAAAAGGAGAAAATGAACAGGAAGGATTATTGGTTGCATGAGGGAATTGTTGTTAAGGTTATGAGCAAAGCCTTGGCAG AGAAGGGTTACTACAAGCAAAAGGGCGTAGTGCGGAAGGTGATTGACAAGTATGTTGGGGAAATAGAAATGCTTGAAAGC AAGCATGTGCTTAGGGTTGATCAGGTTGAACTCGAAACTGTGATTCCACAAGTTGGTGGCCGTGTAAAAATAGTCAATGG GGCATATCGCGGATCACTTGCTAGGCTTCTGGGGGTGGATACAGATCATTTTTGCGCTAAGGTGCAGATAGAGAAAGGTC CCTATGATGGTAGGGTCCTTAAAGCTGTGGAATATGAGGACATTTGTAAAGTAGCCCAGTGAGTTTGATCAGTGATTCTA TAAGTTGCATGAATTGGAGTTTTGTTCTTATGTACCACCTTCTTTTTATATAGAAAGGCCATGTAACAGGTATCATTTTT GCTTGTTGTCTTTGGAAATCAAACTGCATGTCATTTGAGTACTGTAAAATGGACATGTACTTCTCTTTTGTTTTTTTTGT TTTTTTTTTCTATTGGCTAAAGGACCAAAATTAATTTGGACTTGGTTTTGACTATAAGGAATTAAAT
CDS sequence (LotjaGi3g1v0527700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAAAATGATTTTCTCACACCTAAGGCAATTGCCAATCGAATCAAAGCAAAAGGACTGCAGAAGCTTCGGTGGTA TTGCCAGATGTGCCAGAAGCAATGCCGAGATGAGAATGGGTTTAAATGCCACTGCATGAGTGAAGGGCACCAACGTCAAA TGCAAGTTTTTGGGCAAAACCCAACTCGGATAATTGATGGCTATTCTGAAGAGTTTGAGAAAACATTCCTTGAGCACATG AAGCGCAGCCACCGATTCAGCCGCATAGCTGCCACTGTCGTGTATAATGAATACATAAACGATAGACACCACGTTCATAT GAACTCCACTGAGTGGGCTACGCTTACTGATTTTGTAAAGTACTTGGGTCGAACTGGCAAGTGCAAGGTTGATGAAACAC CCAAGGGATGGTTCATAACATACATAGATAGAGATTCAGAAACCCTTTTCAAGGAGAAGATGAAGAATAAGAGAATCAAG GCAGATATGGCAGATGAAGAAAAGCAAGAGAGGGAGATAATGAAACAGATTGAAAAGGCTGAGCAATTGATGCAGCCACC CAATTCTGATTCTGATCAGACTTCACTAGCTGAGCCTCCAAGGGAATTTAATGTAGAGGATGGAGTTAAGATAGGATTTT CTCTTGGGACATCGGCAAGACCTGGGACCAAGGAAAAACTTGAAGAATCGAGGGTGACATTTGATGAGGTTGGTGAAGAG AAAAATGAGGAAAGAAAGAATGGAAACAATTTGAAGAGGAAAGAAATTGGTGGTGGAAAATCAGCTTTGGATGAAATGAT GAGGGATGAAGAGAAGAAAAAGGAGAAAATGAACAGGAAGGATTATTGGTTGCATGAGGGAATTGTTGTTAAGGTTATGA GCAAAGCCTTGGCAGAGAAGGGTTACTACAAGCAAAAGGGCGTAGTGCGGAAGGTGATTGACAAGTATGTTGGGGAAATA GAAATGCTTGAAAGCAAGCATGTGCTTAGGGTTGATCAGGTTGAACTCGAAACTGTGATTCCACAAGTTGGTGGCCGTGT AAAAATAGTCAATGGGGCATATCGCGGATCACTTGCTAGGCTTCTGGGGGTGGATACAGATCATTTTTGCGCTAAGGTGC AGATAGAGAAAGGTCCCTATGATGGTAGGGTCCTTAAAGCTGTGGAATATGAGGACATTTGTAAAGTAGCCCAGTGA
Protein sequence (LotjaGi3g1v0527700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQVFGQNPTRIIDGYSEEFEKTFLEHM KRSHRFSRIAATVVYNEYINDRHHVHMNSTEWATLTDFVKYLGRTGKCKVDETPKGWFITYIDRDSETLFKEKMKNKRIK ADMADEEKQEREIMKQIEKAEQLMQPPNSDSDQTSLAEPPREFNVEDGVKIGFSLGTSARPGTKEKLEESRVTFDEVGEE KNEERKNGNNLKRKEIGGGKSALDEMMRDEEKKKEKMNRKDYWLHEGIVVKVMSKALAEKGYYKQKGVVRKVIDKYVGEI EMLESKHVLRVDQVELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDHFCAKVQIEKGPYDGRVLKAVEYEDICKVAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 396 | 396 | 9.4E-181 | ||
| SUPERFAMILY | 26 | 64 | 39 | 4.76E-6 | ||
| SMART | 52 | 178 | 127 | 2.5E-82 | ||
| Pfam | 52 | 177 | 126 | 2.8E-48 | ||
| Gene3D | 60 | 160 | 101 | 1.6E-43 | ||
| Coils | 156 | 183 | 28 | - | – | |
| MobiDBLite | 214 | 264 | 51 | - | – | |
| MobiDBLite | 222 | 264 | 43 | - | – | |
| Coils | 260 | 280 | 21 | - | – | |
| Pfam | 279 | 332 | 54 | 2.4E-23 | ||
| Gene3D | 287 | 340 | 54 | 1.3E-23 | – | |
| Gene3D | 341 | 397 | 57 | 4.6E-25 | ||
| CDD | 343 | 396 | 54 | 8.45669E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0527700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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