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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0527800 |
| Transcript ID | LotjaGi3g1v0527800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTPase; TAIR: AT4G10620.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8W4I6|BPG2_ARATH GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic; TrEMBL-Plants: tr|A0A151TMY8|A0A151TMY8_CAJCA Uncharacterized protein yqeH; Found in the gene: LotjaGi3g1v0527800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94458948..94461013) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTCGCAGCTCGAAAACTCTCCCCTTCGAAGCTTAAGCCACTCTTTTACTTATCACTCCTTTCTGAGTGCAAAAACGA TGCCAAGTCAAGCATCTTCTCGATCTTACCATGCTCGAAAATCCATTTCCAAAGCTTCCCAGAGTTTAGGTCTTTTTCTT CACAGCCTGCAGAATCAGCTCTGAAGCAAAAGTTGATCCTATCTCGTGAGGGTAATTATGATGAAGGAACATCGCAATCT CTTCATGTTTGTCCTGGTTGTGGGGTTTATATGCAGGATTGTAATGCAAAACACCCTGGTTATTTTGTTAAACCCTCTGA GAAAGACATGAATTATAGATTGCACAACCATCTTGAAGCGGTTGCGCACGAGCCTGAGTTCTCGAATTCGGTTAAAAAGG GACTTGTTATCGAACCGGAAAAGCTTAATGATGATGATTTGAAAGTGATAAAGAAGCCGGAGAAGCCGGTGGTGTGCGCA CGATGCCATTCGTTGCGGCATTATGGGAAGGTGAAGGATCCGACCGTGGAAAACTTGCTTCCGGATTTTGATTTCGATCA TACTGTTGGGAGGAAGTTGGCGTCCGCGACGGGGGCTCGTTCGGTGGTGCTTATGGTTGTGGATGCGGCGGATTTTGATG GGTCGTTTCCGAGGAAGGTTGCAAAATTGGTTTCGCAGACGATTGAGGATAATTCTGCTGCGTGGAAGAAGGGTAAGTCT GGGAATGTACCTAGAGTGGTACTTGTTGTGACGAAGATTGACTTGTTACCTAGCTCATTGTCACCAACAAGACTTGAGCA CTGGATTAGGCAGAGAGCAAGAGAGGGTGGGATTAATAAGATTACTAGCTTGCACATGGTGAGTTCTTTGAGAGATTGGG GACTGATGAATCTTATAGATGATATAATTAAATTGGCTGGACCTAGAGGTAACGTGTGGGCTGTTGGGGCGCAGAACGCT GGAAAGAGTACACTGATAAATTCTATAGGGAACTATGTTGAAGGGAAGGTTACACATCTTACAGAAGCACCTGTTCCAGG GACTACACTGGGCATTGTTAGGGTGGAAGGTGTTCTTCCAAGTCAGGCAAAGTTATTTGATACACCCGGCCTTCTTAATC CTCACCAAATTACAACAAGGTTGACGAGGGAAGAGCAAAAGCTTGTTCACGTGAGCAAGGAGTTGAAACCTAGGACATAC AGAATTAAGGTTAGTGCACTGAAATGCTAATTCATGGTACTGAATCTTATGTTTTTGTTAATACATGTACGCTAAGATGC ACCGTGGTTTTTATTTGTATGTTTTGTCTGTTGTTAAAACCTACTGTAACTTCATTCTTCTGCCAATTTATTGTGGTAGG CTGGTCATTCGATTCACATAGCCGGTCTAATGAGACTGGATATCGAAGAAACGTCTCTGGATACTATTTATGTCACAGTG TGGGCATCTCCTTATCTTCCCCTGCACATGGGTAAAGTAGAAAATGCAGATAAAATGTTTCAAGACCATTTTGGACGCCA GTTACAGGTATTCTCTATGTTCATTTTAATTGACTATATATTTAGCAATTCCTTGCAAGTAAAAGTCACCAGTTACTCTT TTGATTCACAAGTATTGATCATTCATTGGACATTACCATTTCCTCTATTATAACACTAGTCTGAATTGTTCTTTGTGCAG CCACCAATCGGGAAAGAACGAGTTCAAGAACTGGGGAATTGGGCGAGAAGGGAATTTCGTGTTAGTGGGAACAGTTGGGA CTCGAGTTCTGTAGACATAGCTGCTGCAGGGCTTGGTTGGTTTGCCATTGGACTTAAAGGAGATGCAGTGTTAGGTGTTT GGACTTATGAAGGAGTTGATGTTGTTCTTCGCAATTCTTTAATACCCTACAGATCACATACTTTTGAAGATACAGGATTT ACAGTATCCAAGATAGTGTCGCACTCTGACCGAGCTATGAACAAGTCACATCAACGAAACGAGAAAAAGGCAAAGGCAAT TGAGTCGGAAGTAGTTGTGAACACCTAATTTTGTTAAATAACAATAAGTGTACGAGTGTTAGTTGA
CDS sequence (LotjaGi3g1v0527800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCGCAGCTCGAAAACTCTCCCCTTCGAAGCTTAAGCCACTCTTTTACTTATCACTCCTTTCTGAGTGCAAAAACGA TGCCAAGTCAAGCATCTTCTCGATCTTACCATGCTCGAAAATCCATTTCCAAAGCTTCCCAGAGTTTAGGTCTTTTTCTT CACAGCCTGCAGAATCAGCTCTGAAGCAAAAGTTGATCCTATCTCGTGAGGGTAATTATGATGAAGGAACATCGCAATCT CTTCATGTTTGTCCTGGTTGTGGGGTTTATATGCAGGATTGTAATGCAAAACACCCTGGTTATTTTGTTAAACCCTCTGA GAAAGACATGAATTATAGATTGCACAACCATCTTGAAGCGGTTGCGCACGAGCCTGAGTTCTCGAATTCGGTTAAAAAGG GACTTGTTATCGAACCGGAAAAGCTTAATGATGATGATTTGAAAGTGATAAAGAAGCCGGAGAAGCCGGTGGTGTGCGCA CGATGCCATTCGTTGCGGCATTATGGGAAGGTGAAGGATCCGACCGTGGAAAACTTGCTTCCGGATTTTGATTTCGATCA TACTGTTGGGAGGAAGTTGGCGTCCGCGACGGGGGCTCGTTCGGTGGTGCTTATGGTTGTGGATGCGGCGGATTTTGATG GGTCGTTTCCGAGGAAGGTTGCAAAATTGGTTTCGCAGACGATTGAGGATAATTCTGCTGCGTGGAAGAAGGGTAAGTCT GGGAATGTACCTAGAGTGGTACTTGTTGTGACGAAGATTGACTTGTTACCTAGCTCATTGTCACCAACAAGACTTGAGCA CTGGATTAGGCAGAGAGCAAGAGAGGGTGGGATTAATAAGATTACTAGCTTGCACATGGTGAGTTCTTTGAGAGATTGGG GACTGATGAATCTTATAGATGATATAATTAAATTGGCTGGACCTAGAGGTAACGTGTGGGCTGTTGGGGCGCAGAACGCT GGAAAGAGTACACTGATAAATTCTATAGGGAACTATGTTGAAGGGAAGGTTACACATCTTACAGAAGCACCTGTTCCAGG GACTACACTGGGCATTGTTAGGGTGGAAGGTGTTCTTCCAAGTCAGGCAAAGTTATTTGATACACCCGGCCTTCTTAATC CTCACCAAATTACAACAAGGTTGACGAGGGAAGAGCAAAAGCTTGTTCACGTGAGCAAGGAGTTGAAACCTAGGACATAC AGAATTAAGGCTGGTCATTCGATTCACATAGCCGGTCTAATGAGACTGGATATCGAAGAAACGTCTCTGGATACTATTTA TGTCACAGTGTGGGCATCTCCTTATCTTCCCCTGCACATGGGTAAAGTAGAAAATGCAGATAAAATGTTTCAAGACCATT TTGGACGCCAGTTACAGCCACCAATCGGGAAAGAACGAGTTCAAGAACTGGGGAATTGGGCGAGAAGGGAATTTCGTGTT AGTGGGAACAGTTGGGACTCGAGTTCTGTAGACATAGCTGCTGCAGGGCTTGGTTGGTTTGCCATTGGACTTAAAGGAGA TGCAGTGTTAGGTGTTTGGACTTATGAAGGAGTTGATGTTGTTCTTCGCAATTCTTTAATACCCTACAGATCACATACTT TTGAAGATACAGGATTTACAGTATCCAAGATAGTGTCGCACTCTGACCGAGCTATGAACAAGTCACATCAACGAAACGAG AAAAAGGCAAAGGCAATTGAGTCGGAAGTAGTTGTGAACACCTAA
Protein sequence (LotjaGi3g1v0527800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAARKLSPSKLKPLFYLSLLSECKNDAKSSIFSILPCSKIHFQSFPEFRSFSSQPAESALKQKLILSREGNYDEGTSQS LHVCPGCGVYMQDCNAKHPGYFVKPSEKDMNYRLHNHLEAVAHEPEFSNSVKKGLVIEPEKLNDDDLKVIKKPEKPVVCA RCHSLRHYGKVKDPTVENLLPDFDFDHTVGRKLASATGARSVVLMVVDAADFDGSFPRKVAKLVSQTIEDNSAAWKKGKS GNVPRVVLVVTKIDLLPSSLSPTRLEHWIRQRAREGGINKITSLHMVSSLRDWGLMNLIDDIIKLAGPRGNVWAVGAQNA GKSTLINSIGNYVEGKVTHLTEAPVPGTTLGIVRVEGVLPSQAKLFDTPGLLNPHQITTRLTREEQKLVHVSKELKPRTY RIKAGHSIHIAGLMRLDIEETSLDTIYVTVWASPYLPLHMGKVENADKMFQDHFGRQLQPPIGKERVQELGNWARREFRV SGNSWDSSSVDIAAAGLGWFAIGLKGDAVLGVWTYEGVDVVLRNSLIPYRSHTFEDTGFTVSKIVSHSDRAMNKSHQRNE KKAKAIESEVVVNT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 53 | 114 | 62 | 1.9E-190 | – | |
| PANTHER | 53 | 114 | 62 | 1.9E-190 | – | |
| PANTHER | 151 | 568 | 418 | 1.9E-190 | – | |
| PANTHER | 151 | 568 | 418 | 1.9E-190 | – | |
| CDD | 159 | 371 | 213 | 7.61784E-62 | – | |
| Gene3D | 190 | 376 | 187 | 1.1E-34 | – | |
| SUPERFAMILY | 200 | 410 | 211 | 4.22E-17 | ||
| Pfam | 312 | 387 | 76 | 3.1E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0527800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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