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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0531600 |
| Transcript ID | LotjaGi3g1v0531600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ulp1 protease family, carboxy-terminal domain protein; TAIR: AT3G06910.1 UB-like protease 1A; Swiss-Prot: sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1; TrEMBL-Plants: tr|G7K006|G7K006_MEDTR Ulp1 protease family, carboxy-terminal domain protein; Found in the gene: LotjaGi3g1v0531600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94874987..94877354) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTAAGTTTGTGCAAATTCTGCCCCTACTCTATTTTTGTCGACGTTTCTACCCCTCATGTTTTCAAACAGTGAACTGT CTACCCCTCCGTCAGTCAGGCTTTCCCAGGAGTGGTTCCTGAGTGGATTGGAGAGATGAAGAAGAGTATATGAAGTTGAT GATGATCAAGGAAATGATAGAAATTAAATTTGCTTGATGTATATATCAATTATGCATGTAATTGAACTGGATAAATGCAT GTTTTGCTACTTACAGGTCTTGAATTTGAATCTCTCTTGCCTCTTTTCTCAATTTCACTTGTAATTTCCACGTGACAGTT CCAAAAAATATATAACAAAAAAGTCACATCAGCTCATTCCGTTGGTTTTTTAACGTTTAACTGATGGAGAGGTAGACGGT GCACTGTTTGAAAACATAAGGGGTAGAAACATCGATAAAAATATAGTAGGGGCAGAATTTACACAAACTTGAAACATCAG GGGCCAAAACTGCTTTTTAGCCTAAGATCTGCTATATTGTAGGGACTTGTTGGTGCCTTTGTTAGGCAAGAAGTAGACCA GACAAGGTCTAGGCTGTTTGTCACACCACCCTCATCCAAAAGAGCTTCTAGCTCTTCAGCTACTTTTCGAAGTCCTATCA CTGGCCCCCAATCGATCAATCTAGTGACCCAAGCGAGGCTCTACATGCGCCATCTACCTCCTCCACTTGTTCCAAAGGTA TACTTCTGTTTATGCACAGGAAATTTTGCTTTTGTTTTTTATTTGCAAAAGCTGATTAAGTTTAGTTCATGTTTTAATGC CAGGGTGCCAGGCCAAAGTTTGCAGTCCCTGAAGAGTTGGACTTGTTATTGACTGATACTCAGGTTGCTACATACTTATT CGAAGAGGATAGCGACCCATAGTATGTTGAATACTTATTCCTATTTGTTATAACTGTATTTTGTATTATGGTGATATTTT AATGAGCTGAATTCTTTGCTCAGTGAGCTGTTGTTGAGTATGGGTCGTTATGAAGCTGTGAGAAGGGACTTTGATTGCCT CATCCCTGGGAAGGAAATAACTGACAAGGTTTGTGATTCATTATTTTAGCTTTACTGCTTTATTTTCATCAGTGTTTGAT TTGTTTATAAATCTGCAAAACAGATTATAACCTTGGTTGCTGTCAAGATCATGCGTGAACAAAGCTATCTCATGGATGAT ACTATCTGGTGCTTCCCCCCATCTTTTGTGGTAAGATTTGAAAGAGTTCCTGATCCTGATCTGCATGATATTATTGATGT TATTGAATTCTTATATGTTTTTATTGTTATAATAGGAGGATGTTTACAAGGGCTTTTCTGTTGAGAAATTGTGTAAGGAA TACTTGAGGCCATTCATGTATCCATACAACACTCTGAAATATGTAAGCTTTGTTTAAGTTTCTTGTGTATCAATAATGTT TGTGATTCACCTTTTAACACATTTACTTGCATATGTAGATCTACATTCCTATCAAGACTGAATCTGGGCATTGGTATTTG TGCATCATTTCCATTGGGGATTACACCATTTATCACTTGGATTCCCATCTTAATGAGGAGGACATAGCGGTTAGATGTGC ATCCATGAAAACATTGGTAATGTTTATATGATACTTCACTTGAATCTGATTACTATTTACATTCTAGCAACTTACTTTAA TTTGTTTGCTCTTATTGTTTCAGTGCAACACATTGGTGGAAATGATGAGCACAGAGGACAAATATGTGGAAACTAACTTT TACCGGAAAATTGTGGACTTTCATTCTTGGAAGCTAAAGGAAGCAAGGGGTATCCTCAATACTGGTAGCAGGTAGTCCCT TTTGAAATTGAACTGCATACATTTAATTGCTTAAATTTGTCTAAGTTTCGGTAACTCTTCCATGTTATTATGTTAACTGC AGCCATGATTCAGCTGTGTGGCTGTTAAGTTGGCTTGAATTGGGTTCTGGGTTTAATCCCAATCGATCTGGCTATGTAAG TAAATAGTCCTCCTCATGGTTTATGGCTGTTTTGTGATTGTGTTTGTTGTTAGAATTAATTAATTTCTGTTTATTTTCTT ATCCCAGCCAAATGAAAGGGCTGTTCGCATGAACACTGCAACCTCTCTGTTATGTGGTGACCACAATGACACTCGGAGGA GCTTGGAGGAGAAGGCCACTGTCTTCTGGAATTCATGTCACACTGCTGATGTTGAAGGGGTGGCTGCGACTTTGTGAAGT ATGTGGTTGTAGGGCAGGGCAAGTATTATTTTTTGGCTGCATTTTTTTGTTGCACAGATTTTGTGTTGCACAGATTTTGG TTCTGTAAAATATAACTTTACAACAATGATGCAACAATGATGCGTTTG
CDS sequence (LotjaGi3g1v0531600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCCATCTACCTCCTCCACTTGTTCCAAAGGGTGCCAGGCCAAAGTTTGCAGTCCCTGAAGAGTTGGACTTGTTATT GACTGATACTCAGGTTGCTACATACTTATTCGAAGAGGATAGCGACCCATATGAGCTGTTGTTGAGTATGGGTCGTTATG AAGCTGTGAGAAGGGACTTTGATTGCCTCATCCCTGGGAAGGAAATAACTGACAAGATTATAACCTTGGTTGCTGTCAAG ATCATGCGTGAACAAAGCTATCTCATGGATGATACTATCTGGTGCTTCCCCCCATCTTTTGTGGAGGATGTTTACAAGGG CTTTTCTGTTGAGAAATTGTGTAAGGAATACTTGAGGCCATTCATGTATCCATACAACACTCTGAAATATATCTACATTC CTATCAAGACTGAATCTGGGCATTGGTATTTGTGCATCATTTCCATTGGGGATTACACCATTTATCACTTGGATTCCCAT CTTAATGAGGAGGACATAGCGGTTAGATGTGCATCCATGAAAACATTGTGCAACACATTGGTGGAAATGATGAGCACAGA GGACAAATATGTGGAAACTAACTTTTACCGGAAAATTGTGGACTTTCATTCTTGGAAGCTAAAGGAAGCAAGGGGTATCC TCAATACTGGTAGCAGCCATGATTCAGCTGTGTGGCTGTTAAGTTGGCTTGAATTGGGTTCTGGGTTTAATCCCAATCGA TCTGGCTATCCAAATGAAAGGGCTGTTCGCATGAACACTGCAACCTCTCTGTTATGTGGTGACCACAATGACACTCGGAG GAGCTTGGAGGAGAAGGCCACTGTCTTCTGGAATTCATGTCACACTGCTGATGTTGAAGGGGTGGCTGCGACTTTGTGA
Protein sequence (LotjaGi3g1v0531600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRHLPPPLVPKGARPKFAVPEELDLLLTDTQVATYLFEEDSDPYELLLSMGRYEAVRRDFDCLIPGKEITDKIITLVAVK IMREQSYLMDDTIWCFPPSFVEDVYKGFSVEKLCKEYLRPFMYPYNTLKYIYIPIKTESGHWYLCIISIGDYTIYHLDSH LNEEDIAVRCASMKTLCNTLVEMMSTEDKYVETNFYRKIVDFHSWKLKEARGILNTGSSHDSAVWLLSWLELGSGFNPNR SGYPNERAVRMNTATSLLCGDHNDTRRSLEEKATVFWNSCHTADVEGVAATL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 27 | 258 | 232 | 1.8E-13 | – | |
| SUPERFAMILY | 39 | 182 | 144 | 1.06E-19 | ||
| ProSiteProfiles | 53 | 233 | 181 | 8.956 | ||
| Pfam | 128 | 233 | 106 | 1.6E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi3g1v0531600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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