Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0531800 |
| Transcript ID | LotjaGi3g1v0531800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translocon-associated protein subunit alpha; TAIR: AT2G16595.1 Translocon-associated protein (TRAP), alpha subunit; Swiss-Prot: sp|P45434|SSRA_ARATH Translocon-associated protein subunit alpha; TrEMBL-Plants: tr|I3SEK1|I3SEK1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0531800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94891807..94895725) extracted from Lotus japonicus Gifu genome v1.2.
CAGACATCTAAGCGAGCATTGAGAGAAAACACTAATCTCGTATAACCAAAACGACATCGTTAAAAGTCGTTCATGGAACC TGCTTTTTCTCAAAACCAAACCCTATGTTTCTATTCTATTACATATCTCTGGTTTTCATCGTTGAAAATCAACACTTCTC ATTTTCATCTGCAAATTCTGAAACCAACACCTTCCACTATGGCTTCCATCAACAGCTTTTGGATTCTCTCTCTCGCTCTC CTCTTCCTCGCTTCCCCTCTCCTTCAAGGTCAGCTCCCCCAAATTTCTAGATCTAGATCCGATCATTTCTTCAATGCATG TCACGATTTCCTTATTACTGCCGACCCAATTGATCATTTTCCAGCTTTTCGAGCTTTGATCTGCTTTACAGTGCTCTTAA TTTTTGAAATTATATGGGTATTTTGTCAATTTGGGACCAATTGTTGAACCTGAAAGCACTCAGTTGCATTTAAATAGATT CTAGATTGGATTTTATATTGAATTCTTGATTTCATAATGGTTCGAAATACTGGGTTTGAAGGGGGTGACAAGATGGCATG CAACTTGATTCATCACTTTATCTGCCCTATTGGATCTAGCTAATAATTTGATGATTGTGCTTTCATGCATGGCAATGGTT AATTGTGGTTTTTTCTATTTGCTAGTTGCTATGTGCCAATCTGACTCTGATGGAGCTGTGGATGCCACTGACGAAGCGAG TGATATTGGCATCGTTGGTGATGATGCTCAAGACTATGGTGGTGAGACCTTCACCTCTGCTCCGGGAATTGAAACAATAA GCGTATTTCCAAAAAATAGCGCAAGATGTAAGAATCGTTCTGTCTGGTGATCCACAATAGGATTCATAACCTATTCTTTT GTTTTATTTGATTAATGGGTTGACTTTTCTTTATGTTTGTATGAACATGATGCAGTGGTAACTGCCGGAGAAGATACAGA GCTGCTCGTTGGTGTGAAAAATAATGGTAATTAAATAGAATTGGATGCTCGTTGGAACCATTTTATTCATGCTTTCAAGT TTCTTAACTGTTATTTGACACATTTTTACGTAATGACGCCTTACATTTGTGTTACATTGTTTTCTTGCTGGTCTTTGGGA AGTGCGGAAACAAAAATAGAAAATATTTTCATTCATTAGCAGAATAGCTGATTTTGTTCATTGAATGAACTAAAAACAGG AGAGTCAAGTTTGAATGTTGTTGCAATCAGGGCCAGTGTTCACCTTCCCTTTGATCATCGCATGCTCGTTCAAAATCTTA CTGCTCAGGTAATAATTGGTTACCTGAATATCCAAAATGGAGCTTAGCTATGTGTTTATGTTTTGAAATTTTCTGCACTA TTGCTTTAAATTATTATTTATACTTGTTACCTTCAATCAGTGTTAAATTTCTAAAAGACTAAATTGATCAAGAAACTCAA TAATTTGGAACCAATATTGGGAATATGTAAATTGTTAAAGCGAGGATTTCAAATCCTCCTGGAAGTTGTTTTGGACTTTG GGTAGTAAAATGTAGAATTTCAAACCGATATGGCCATATGTATGAGAATACTAGAATTGTTAACCTTCATATGAAATGGA TTGTTTTACTCGCCACGATGGCATCTATAGGCGATGGCTTTTTATCTTAGCATATTTGTGTGTGAATCACCACTGCTGCC ATGTACAGAAAAGGGGGTATGTGGATTTACTTTTGATATTAGGGTAGTCTATGATTTTGTTAGGTTAGATAGTGCCCATC CATCTAAATTAGTTCTCCAAGGACATATGGGAACAATTCATTATGATGACCCGATTTCTTTGGCAATTCATGGTTAATAT GTTATTGCACGTGTGTTTTCCATTTCTTATGAAGGAAATAGGGTTCGGTGGTATTATGTCAGCATGGCTATTCTGATTCA GTCAATGGTATTGCATAAATAATTTAAATGCAAGCTTTTTTTCAATTGCAGATTTTCAACAATGGTTCAGTACCATCCTC AGCACAGGCTACTTTCCCATATTTGTTTGCAGTCAGCAAGTTCTTGCAGGTATCTCCATTGCTTTGAAGGTCCCTGCTTT TACTTTTTAAGCTAGATTAACATCACAAAGTGCTTCTATACTCATGCTCAATGAATTTTTCTGCATGCAGCCTGGAACTT TTGATCTTGTGGGCAGTATTGTATATGAGATAGAAGACAATCCGTATCAAACCACCTTCTTTAATGGCACTATTGAAGTT GTTGAAGCTGGTGGCTTTCTTAGCATTGAATCTGTTTTTCTTGTTACTCTTGGAGCTGCCCTCCTGGTCCTCCTTGGGCT ATGGATTCATGGTCAAATACAAAACCTGTCTAAGGTACAAACTAATATAGTCTATATCTTTTCAAATAGTGTGCTAGGAT TACCCTTACTGTTAGAGTTTGCTTACGGTACTTCTCATGTTTAATTGGGTCCTGATTTATATCTGGACTTTGTGCGCTCC TGTTTGATTTGCTAATTTATCTTGTTATTTATTTACTTATTTCACACACTGAGTTTTGTAGTTTGTTAAGAATATATTAC TTTCTGAGAGTATTTTGGCACTTCTTAACACCTTGGCTCATTCAGTAGTCTGGCCAAACACTATTTCATGCTAACAGGGA TTTGGCATACAATACAACACACTTTCAATAAATATTTCTGACATCTATATTAAATTCTATGAATCATGTCCTATTTTTGA TACCATAATGAATATTACAATGAAATTGTCTTTTGCATCAAGTTCTTAGATTATCCAGACTAAGAACCATACCATATGCA GCAGCTTAGTAGGAGAAACCATATTTGCAAAGTTTCAAGTTAACTGATGTGGTTGATGTCATCTTGGTTTGAGTTATTCT TCATCTGGAGCGAGAGAATCCATTTTCTCTCCTAATATCAATTTTTTTTCTTTAGTACATATACATAATTTTTAGAAGGC ATCTGATTAGAATTTCAATTTTAAAGAAACTCGATAGTTTTTTGTTTCCCACTTGAGCCCACAAATTTCATTCCTCTCTG ATAATTTCATGTTTGCTCTTCAATTTTGCTCAGAAAACAAAGAGGGCTCCAAAAGTTGAAGTTGGGACTAGGAGTATCGA TGCTTCAACAGATGAATGGCTACAGGTATGTTCTATGCTTTATATAAATACTGTTCTAATTGGATATGATATGATGTCCA TCAGTGAGCTTTTCTTTTTCATACTTAACCTAAACATTACAAGGCTTCTGAAATCTTTCTCTGTCCAGGGAACTGCATAT GCCCAGTCTCTGTCAAGCAAATCAAAGAAGAAGAAGTAGATGAACACCTGTTCTCAAGTTCAGCCGCACAAGACTCTACC ATGTGGTACAGAATCCTGTAACAGACTAGGTCTGTGAGTTTGTTAGGAGTACGAGGAAGTAGTTCTGAAATTTTGGCTGA AAGGACCTGTCTTTTCTGTTGTAGCTTAAAAGAATTTTCACTTTTTTTTAGCCTTCCAATGAAGTTGAGCATTATCGATG GAAAACTAACAAGGATGTGAGTTAGGAAGGATACAACTTTTGAGATGTGGCAGAATTTTTATCAGATAATTTAATTTTAT TCATATCCTTTTGTTTTTATCGTGGGTGCATTTGGAATTTTAGTTTCTATATTGTCCTTGTCTTCCCTGGTTTTAAATTT ATTCTCCTAGAGCCTAATTAATGGAAGTTGTTGAGTTGAGATTGATAGGGGATGGAAGATATTTATGTTGAGCAGGTATA TCATTTTCTTTTCTAGACGCTCACATAATTTGGAGTTTGTTGAAGATGGATCTTATAAAGTTAAGACATCATTAACATCA CGAATGTGTAATTACAAAAAAAAGGGTATGATTTTTGGATCCGTTTACTATGGACCACTTTTTTGTGGTCCATGGTTAC
CDS sequence (LotjaGi3g1v0531800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCTGCTTTTTCTCAAAACCAAACCCTATGTTTCTATTCTATTACATATCTCTGGTTTTCATCGTTGAAAATCAA CACTTCTCATTTTCATCTGCAAATTCTGAAACCAACACCTTCCACTATGGCTTCCATCAACAGCTTTTGGATTCTCTCTC TCGCTCTCCTCTTCCTCGCTTCCCCTCTCCTTCAAGTTGCTATGTGCCAATCTGACTCTGATGGAGCTGTGGATGCCACT GACGAAGCGAGTGATATTGGCATCGTTGGTGATGATGCTCAAGACTATGGTGGTGAGACCTTCACCTCTGCTCCGGGAAT TGAAACAATAAGCGTATTTCCAAAAAATAGCGCAAGATTGGTAACTGCCGGAGAAGATACAGAGCTGCTCGTTGGTGTGA AAAATAATGGAGAGTCAAGTTTGAATGTTGTTGCAATCAGGGCCAGTGTTCACCTTCCCTTTGATCATCGCATGCTCGTT CAAAATCTTACTGCTCAGATTTTCAACAATGGTTCAGTACCATCCTCAGCACAGGCTACTTTCCCATATTTGTTTGCAGT CAGCAAGTTCTTGCAGCCTGGAACTTTTGATCTTGTGGGCAGTATTGTATATGAGATAGAAGACAATCCGTATCAAACCA CCTTCTTTAATGGCACTATTGAAGTTGTTGAAGCTGGTGGCTTTCTTAGCATTGAATCTGTTTTTCTTGTTACTCTTGGA GCTGCCCTCCTGGTCCTCCTTGGGCTATGGATTCATGGTCAAATACAAAACCTGTCTAAGAAAACAAAGAGGGCTCCAAA AGTTGAAGTTGGGACTAGGAGTATCGATGCTTCAACAGATGAATGGCTACAGGGAACTGCATATGCCCAGTCTCTGTCAA GCAAATCAAAGAAGAAGAAGTAG
Protein sequence (LotjaGi3g1v0531800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPAFSQNQTLCFYSITYLWFSSLKINTSHFHLQILKPTPSTMASINSFWILSLALLFLASPLLQVAMCQSDSDGAVDAT DEASDIGIVGDDAQDYGGETFTSAPGIETISVFPKNSARLVTAGEDTELLVGVKNNGESSLNVVAIRASVHLPFDHRMLV QNLTAQIFNNGSVPSSAQATFPYLFAVSKFLQPGTFDLVGSIVYEIEDNPYQTTFFNGTIEVVEAGGFLSIESVFLVTLG AALLVLLGLWIHGQIQNLSKKTKRAPKVEVGTRSIDASTDEWLQGTAYAQSLSSKSKKKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 43 | 43 | - | – | |
| Phobius | 44 | 64 | 21 | - | – | |
| TMHMM | 46 | 68 | 23 | - | – | |
| PANTHER | 52 | 300 | 249 | 9.8E-118 | – | |
| PANTHER | 52 | 300 | 249 | 9.8E-118 | – | |
| Phobius | 65 | 233 | 169 | - | – | |
| Pfam | 78 | 285 | 208 | 5.0E-26 | ||
| TMHMM | 231 | 253 | 23 | - | – | |
| Phobius | 234 | 253 | 20 | - | – | |
| Phobius | 254 | 300 | 47 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. |
Expression pattern of LotjaGi3g1v0531800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…