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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0532400 |
| Transcript ID | LotjaGi3g1v0532400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ER lumen protein retaining receptor-like protein; TAIR: AT1G75760.3 ER lumen protein retaining receptor family protein; Swiss-Prot: sp|P48583|ERD2_CAEEL ER lumen protein-retaining receptor; TrEMBL-Plants: tr|I3SDS4|I3SDS4_MEDTR ER lumen protein retaining receptor-like protein; Found in the gene: LotjaGi3g1v0532400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94943439..94945571) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGCCTCAGAGAATGTCGATCCACACCGTCGCCACATGGGTCAGGCGCCAACCCCCAAAGGTCAAGGCCTTCCTCGC CGTCGTCTCCGGCATGGCCGCTCTCGTCCTTCTTCGCTTCATCGTTCACGATCACGATAACCTCTTCGTTGCTGCTGAAG CTGTCCACTCCCTCGGAATCTCCGTTCTCATCTATAAGCTCATGAAGGAGAAGACTTGTGCCGGTAACCCCAATTTCCCC CTTTTACCATTTACCCTAACAATCTTTCTCAAAATTTCCATTGTTTTGCATCGATTTGGTTGCACTGTAATTGCAATTTC TTGCGTGTTTTGTTTGTTTTCTTTGATCTTCCTGGGTTTTGTTAATTGGGTATGTTAGGTTAAAAGATTCTCCTTTTTAG TTTTATAAACAGTAAATTTGCTTAGGGCAAGAAAATAAAACATGGGTATGTAAAAAGATCAATTTCTGGGGATTAGTTTC TTTAGGTTTTTACCCATCTAGATTTCCTTAACAAAAAATTGAATTTTGGGAAGTTCTTTATTTTTTCTTTTTTTTTGGGC AATTGGGCTAAGCATCAAATCATGTTGGCACTTTTTGGTTGATTTAATTTGTGTGTGTGAGGGTCTTGATCAGTGTCTTG TTTTTTGTTATTGGGATGAGATGGAGACATGTATACCAGTTTGCTAATAGTTTGAATGATGTATTGTACAGGGTTATCAC TCAAATCCCAGGAATTAACAGCTATGTTTTTAGCTGTTAGGCTGTACTGTAGTTTTGTCATGGAATATGACATACACACC CTGCTGGATTTTGCTACTTTCGCAACTACAGTGTGGGTTATTTACATGATTCGTTTTAAACTGAAGGCTAGTTACATGGA GGAGAAGGATAACTTTGCAATATACTATGTGGTAAGCTCAAGTGCACCATCTTTCCTTTCATCCTTTTATTAAGACTTGT TGGTAAAACATTTTTTCTTGTTCATTTGTGGTGGAGATTGAGGTTTAACATGATTAGTTTGAATATTTTGTATGGTCTCT TTAGATGGTAACCATGATCTATGAACTGTGAAGTATCTCTCAACTTCAATATGTCACGTGTGAGATCTTGTATATGTTGA AATATATTGTTGCTAATACTGAAATATCATATTTTTACTAAAGTTGTTTTCTAGTTTTCCTGTTATGTTGAATTTGTCAT GTTAGCTTTATGATACCAAGGCAAATGTTCTTCTGCATGAATAAGACTTAAAATAATCTTGTTCTGTAGAGTGACATGGG AAGATAATTCCTTGTTACATGATTACAAGATATCATGCGAAGGGTTCTGTTACTAATTCTGGTGCTGGTTTGGGCTGTTA AACTACTCATGATTTTCTATAAATCTTTGTGCTATGACAAAGTAAAAAGTGCTACAGATCATATTTGAATGCATCTCTTT ATATGCCCGTACGTTCTTTCTGTCCTCTACTTTGTCTGTTTTCTTGAAGGGTTTAAATTATTCCTCTTCATAATTTCATG ATTTTGTCACTTATTGCTTGTAACTTGTATGTTTACCTTTCATCAGAGTCAGCTTTGATGTACTCTTCTTTTGAAATATG ATGCAGGTGATACCATGTGCTGTGTTAGCCTTGCTTATTCATCCGTCAACTTCTCATCATATATTGAACAGGATTTTCTG GGCATTCTGTGTATATCTAGAAGCTGTTTCAGTACTACCCCAACTGAGGGTCATGCAGAACACAAAGGTATAATTTTGCA ACCTTTGAATCTCCTTCCTTCCAACATTTACATTTATGGGATCTGATCCTATTTATTTTTGTTCTGAATTTGTTTTGTTT GTTACTTTCAGATTGTTGAGCCATTCACAGCTCACTATGTATTTGCACTGGGCGTTGCAAGATTCTTGAGCTGTGCTCAC TGGGTTCTTCAGGTATGTTCATGAAAACACTTAACTGCATTAGTCATTTCCTTGATTCATTTGCAAATTTAGGGGTTACT TGTTTTCTGCCATGAGCCGGTGATCATCATAACTAAGATGGCTTTTTTGGTATTATCTATCTTATTAGTTAAGGATTGAA ATACAAACTTTATTTTACAAATTTGAGTTTCTTTTTCATTTTTAATAGTATAA
CDS sequence (LotjaGi3g1v0532400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCCTCAGAGAATGTCGATCCACACCGTCGCCACATGGGTCAGGCGCCAACCCCCAAAGGTCAAGGCCTTCCTCGC CGTCGTCTCCGGCATGGCCGCTCTCGTCCTTCTTCGCTTCATCGTTCACGATCACGATAACCTCTTCGTTGCTGCTGAAG CTGTCCACTCCCTCGGAATCTCCGTTCTCATCTATAAGCTCATGAAGGAGAAGACTTGTGCCGGGTTATCACTCAAATCC CAGGAATTAACAGCTATGTTTTTAGCTGTTAGGCTGTACTGTAGTTTTGTCATGGAATATGACATACACACCCTGCTGGA TTTTGCTACTTTCGCAACTACAGTGTGGGTTATTTACATGATTCGTTTTAAACTGAAGGCTAGTTACATGGAGGAGAAGG ATAACTTTGCAATATACTATGTGGTGATACCATGTGCTGTGTTAGCCTTGCTTATTCATCCGTCAACTTCTCATCATATA TTGAACAGGATTTTCTGGGCATTCTGTGTATATCTAGAAGCTGTTTCAGTACTACCCCAACTGAGGGTCATGCAGAACAC AAAGATTGTTGAGCCATTCACAGCTCACTATGTATTTGCACTGGGCGTTGCAAGATTCTTGAGCTGTGCTCACTGGGTTC TTCAGGTATGTTCATGA
Protein sequence (LotjaGi3g1v0532400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRPQRMSIHTVATWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVAAEAVHSLGISVLIYKLMKEKTCAGLSLKS QELTAMFLAVRLYCSFVMEYDIHTLLDFATFATTVWVIYMIRFKLKASYMEEKDNFAIYYVVIPCAVLALLIHPSTSHHI LNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 217 | 217 | 7.3E-134 | ||
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 217 | 217 | 7.3E-134 | – | |
| Phobius | 24 | 42 | 19 | - | – | |
| TMHMM | 24 | 43 | 20 | - | – | |
| Phobius | 43 | 47 | 5 | - | – | |
| PRINTS | 48 | 67 | 20 | 5.3E-16 | ||
| Phobius | 48 | 68 | 21 | - | – | |
| Phobius | 69 | 79 | 11 | - | – | |
| Pfam | 72 | 214 | 143 | 3.0E-40 | ||
| PRINTS | 75 | 95 | 21 | 5.3E-16 | ||
| Phobius | 80 | 98 | 19 | - | – | |
| Phobius | 99 | 103 | 5 | - | – | |
| Phobius | 104 | 123 | 20 | - | – | |
| TMHMM | 104 | 123 | 20 | - | – | |
| Phobius | 124 | 134 | 11 | - | – | |
| Phobius | 135 | 152 | 18 | - | – | |
| TMHMM | 136 | 154 | 19 | - | – | |
| Phobius | 153 | 163 | 11 | - | – | |
| TMHMM | 164 | 181 | 18 | - | – | |
| Phobius | 164 | 181 | 18 | - | – | |
| PRINTS | 166 | 186 | 21 | 5.3E-16 | ||
| Phobius | 182 | 192 | 11 | - | – | |
| PRINTS | 188 | 202 | 15 | 5.3E-16 | ||
| Phobius | 193 | 214 | 22 | - | – | |
| TMHMM | 193 | 215 | 23 | - | – | |
| PRINTS | 202 | 218 | 17 | 5.3E-16 | ||
| Phobius | 215 | 218 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein retention in ER lumen | The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ER retention sequence binding | Interacting selectively and non-covalently with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER. |
Expression pattern of LotjaGi3g1v0532400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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