Transcript — View — Lotus Base

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LotjaGi3g1v0533800.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0533800
Transcript ID	LotjaGi3g1v0533800.1
Lotus japonicus genome version	Gifu v1.2
Description	Scarecrow transcription factor family protein; TAIR: AT5G41920.1 GRAS family transcription factor; Swiss-Prot: sp\|Q9FHZ1\|SCL23_ARATH Scarecrow-like protein 23; TrEMBL-Plants: tr\|A0A0L9V7R6\|A0A0L9V7R6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0533800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:95051868..95054574) extracted from Lotus japonicus Gifu genome v1.2.

CACTTTCAATATACGAAATGTATAATTTCCATTCCGCATTTATAAGTGGGGTGAGTATGCTCTTAACATAACTCAAGTGG TAGAAGTTGGAGGACATATCAATTGAGTAGAGGAGGTCCATGAATCAATTTTTTACGAGTGTAATTTATCTTTTTAATGT ACAAAAAAAAAGTGCGGTAGGTAATTAGTTCTCGCTCGCAAACATAAGTGCGATAAAATTGAGTGACGAGAAAACGAACC AATTCTAAATATTTTCTCTCTCACACCAAACACTTCCTTTTCTGACACACCCTCTCTACTCTACCCATCTGCACAAACTT CCCTTGTCTTTCTCTTACACTTTTGTCCCTTTTCCCTCAAAACTTTCCTTCAAACCTTTCGATTCTCTCCATTTTCTCTC TCTCGCTTTTCACCGATCATGCTTCAAAGCTTAATCCCTCGTTCCCCTCTCAATTCTTCCAAACCAACCACCATGAAAAC CAAGCGCGATGACGGCGGCGGCGGAAGCGATTCCGCCGTCGACGAACACTCCTTCAAGCGGAGAAACTTCTCCGGCGAGA AAGCGATAGAAGAAGGCGAGGCGGCGCATGAGGAGGACCAGGTTCTGCAACCGGCGTCCTCCTCCGGTGAAGACGAATCC ACCGGGCTTAAACTCCTAGGACTTCTACTCCAATGCGCAGAGTGCGTCGCCATGGACAATCTCGACTTCGCGAACGACCT TCTCCCGGAGATTGCAGAGCTTTCTTCACCGTTCGGAACTTCGCCGGAGCGCGTCGGCGCGTACTTCGCGCAGGCTCTAC AATCTCGCGTGGTGAGTTCCTGCCTCGGCACCTACTCGCCGCTGATGGCGAAATCGGTAACCCTAACTCAGTCGCAGAGA ATCTTCAACGCGTTTCAATCCTACAACTCGGTGTCGCCGCTGGTGAAATTTTCGCACTTCACCGCCAATCAAGCGATCTT CCAGGCGCTAGACGGCGAGGATCGCGTCCACATCATCGACCTCGACATCATGCAGGGGCTTCAATGGCCGGGACTGTTCC ACATCCTCGCCTCGCGAGCGAGGAAGATCCGTTCGTTGAGGATCACCGGGTTCGGATCCTCATCGGAGCTGTTAGAATCC ACCGGGAGAAGACTCGCCGATTTCGCGAGCTCGCTTGGGCTTCCGTTTGAGTTTCATCCGGTGGAGGGGAAAATCGGGAG CGTGACGGAGCTGAGTCAACTCGGCGTTAGGCCGGGTGAAGCCACGGTGGTGCACTGGATGCACCACTGCTTGTACGACA TAACCGGAAGCGATTTAGGGACGTTGAGATTGCTGAGTCAGCTCCGGCCGAAGCTGATCACGACGGTGGAGCAGGACCTC AGCCACGCCGGAAGCTTCCTGGCGAGGTTTGTGGAGGCGCTGCATTACTACAGCGCGTTGTTCGACGCGCTCGGGGATGG ATTGGGTGCGGACAGTTTGGAGCGGCACACGGTGGAGCAGCAGCTGCTCGGCTGCGAGATCAGGAATATCGTGGCGGTTG GTGGGCCCAAGAGGACTGGTGAAGTTAAGGTGGAGAGGTGGGGAGATGAGCTGAAACGGGTCGGGTTTCGACCCGTTTCG TTGCGGGGTAACCCGGCTGCTCAGGCGAGTTTGTTGCTGGGAATGTTTCCATGGAGAGGGTACACGCTAGTGGAGGAGAA TGGTTCTCTTAAGATTGGTTGGAAGGATCTGTCTTTGTTGATTGCCTCTGCTTGGCAACCGTCCGATTTGATTACTTATC ATGATTGAAAAGTTGAATATTGAAATTGAAAATTGAAACCAATATCAAATTCAGCTTCATGAATGATGATGAACAACAAC TCTTGTGTTGTGTTGTGTTGTGTTGAGACTCCAAGATAGGACATGGTTGGTTGGAACTTGGAAGACAAAAAGAAGAGAAT CTTTTACTTGAATGAATAGTGAGAAATCAATCATTCATTCAAATTTTCAACAAACTATGATCAACTACTGTGGTTGGTTT CTTGTGATGATTTATTTATTTAATTTATTTTGTAGAATTGTTTAATTGATTATTTCTAGGACTGAGTTAGTGAGAGGGAG GGCAAGGAAGGAAGGAAGGAAGGAAGGAATGAATGTTTGTTTGTTTGTTTGTTTGGGTCCTGTTATATGGGAAGGGAAAG GAAGAGGATGGGTTTTGTCAAGTGTAAAATAATAATAATAATAATAATAATGATGGTTATGAATGATGTGTGGATATGAA ACAGGGGTCCTTTTAGTTTCTGACGTTTGAGAAAACCAATGTTATGTAAGAAGATAGGATCAATAAATATAAATAATGAT GATGAATAATGGTGGATGACGTCTCGTCCATGTCAGATGTTTCTATGGAAAATTTGTGTTGTGGGAAAGTGAAAAAGACT GTACGTTGTACTCATTCCCTCTCAAAATAGAATAGACAGTCAATTCCTCATTACTCACTCACCTGTTCATGGGAGAAAGG GAGAGGCTTCAACTTTCTTGGTAGACCTAACTTTTCGGGTATGTGTTCTCTTGAATTGAAATGTGAAAGTCATTTAAATT GATGTTTGAAATATCTTTAAATTCATCCTTAGCATTAATTTAGTTATTTGTTGTAACCAAAACAAATTGAGTTATTTGTT GCTTGTCAGAGAGTTCACATTCACTGATTCACATATCTTGTGCAACTATGCTGTTTGTAAAAAATCA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0533800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTCAAAGCTTAATCCCTCGTTCCCCTCTCAATTCTTCCAAACCAACCACCATGAAAACCAAGCGCGATGACGGCGG CGGCGGAAGCGATTCCGCCGTCGACGAACACTCCTTCAAGCGGAGAAACTTCTCCGGCGAGAAAGCGATAGAAGAAGGCG AGGCGGCGCATGAGGAGGACCAGGTTCTGCAACCGGCGTCCTCCTCCGGTGAAGACGAATCCACCGGGCTTAAACTCCTA GGACTTCTACTCCAATGCGCAGAGTGCGTCGCCATGGACAATCTCGACTTCGCGAACGACCTTCTCCCGGAGATTGCAGA GCTTTCTTCACCGTTCGGAACTTCGCCGGAGCGCGTCGGCGCGTACTTCGCGCAGGCTCTACAATCTCGCGTGGTGAGTT CCTGCCTCGGCACCTACTCGCCGCTGATGGCGAAATCGGTAACCCTAACTCAGTCGCAGAGAATCTTCAACGCGTTTCAA TCCTACAACTCGGTGTCGCCGCTGGTGAAATTTTCGCACTTCACCGCCAATCAAGCGATCTTCCAGGCGCTAGACGGCGA GGATCGCGTCCACATCATCGACCTCGACATCATGCAGGGGCTTCAATGGCCGGGACTGTTCCACATCCTCGCCTCGCGAG CGAGGAAGATCCGTTCGTTGAGGATCACCGGGTTCGGATCCTCATCGGAGCTGTTAGAATCCACCGGGAGAAGACTCGCC GATTTCGCGAGCTCGCTTGGGCTTCCGTTTGAGTTTCATCCGGTGGAGGGGAAAATCGGGAGCGTGACGGAGCTGAGTCA ACTCGGCGTTAGGCCGGGTGAAGCCACGGTGGTGCACTGGATGCACCACTGCTTGTACGACATAACCGGAAGCGATTTAG GGACGTTGAGATTGCTGAGTCAGCTCCGGCCGAAGCTGATCACGACGGTGGAGCAGGACCTCAGCCACGCCGGAAGCTTC CTGGCGAGGTTTGTGGAGGCGCTGCATTACTACAGCGCGTTGTTCGACGCGCTCGGGGATGGATTGGGTGCGGACAGTTT GGAGCGGCACACGGTGGAGCAGCAGCTGCTCGGCTGCGAGATCAGGAATATCGTGGCGGTTGGTGGGCCCAAGAGGACTG GTGAAGTTAAGGTGGAGAGGTGGGGAGATGAGCTGAAACGGGTCGGGTTTCGACCCGTTTCGTTGCGGGGTAACCCGGCT GCTCAGGCGAGTTTGTTGCTGGGAATGTTTCCATGGAGAGGGTACACGCTAGTGGAGGAGAATGGTTCTCTTAAGATTGG TTGGAAGGATCTGTCTTTGTTGATTGCCTCTGCTTGGCAACCGTCCGATTTGATTACTTATCATGATTGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0533800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLQSLIPRSPLNSSKPTTMKTKRDDGGGGSDSAVDEHSFKRRNFSGEKAIEEGEAAHEEDQVLQPASSSGEDESTGLKLL GLLLQCAECVAMDNLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQSRVVSSCLGTYSPLMAKSVTLTQSQRIFNAFQ SYNSVSPLVKFSHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRARKIRSLRITGFGSSSELLESTGRRLA DFASSLGLPFEFHPVEGKIGSVTELSQLGVRPGEATVVHWMHHCLYDITGSDLGTLRLLSQLRPKLITTVEQDLSHAGSF LARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWGDELKRVGFRPVSLRGNPA AQASLLLGMFPWRGYTLVEENGSLKIGWKDLSLLIASAWQPSDLITYHD

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	17	17	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	70	70	-	–
PANTHER	PTHR31636 View details on PTHR31636 Search for proteins/transripts with this domain View external data on PTHR31636	14	442	429	1.0E-220	–
PANTHER	PTHR31636:SF35 View details on PTHR31636:SF35 Search for proteins/transripts with this domain View external data on PTHR31636:SF35	14	442	429	1.0E-220	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	18	59	42	-	–
ProSiteProfiles	PS50985 View details on PS50985 Search for proteins/transripts with this domain View external data on PS50985	70	440	371	84.548	IPR005202 Show description in modal box View details on IPR005202 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03514 View details on PF03514 Search for proteins/transripts with this domain View external data on PF03514	81	440	360	3.6E-114	IPR005202 Show description in modal box View details on IPR005202 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0533800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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