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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0535300 |
| Transcript ID | LotjaGi3g1v0535300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-1,3-glucanase; TAIR: AT4G16260.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|P23547|E13G_TOBAC Glucan endo-1,3-beta-glucosidase, acidic isoform GI9; TrEMBL-Plants: tr|I3SLW2|I3SLW2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0535300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95215288..95217084) extracted from Lotus japonicus Gifu genome v1.2.
TAGCTAGCTGCCATATAGCTAGTATTTCTCCATGGAGTGATTGACGGGGCAAAATTCCTTGACATCATGCAAAAACTTCA CCTATATATAGCTAGTAATTGGGGAGCAAAAGATATATCAGTGTTAATCAGAGTTGAGTTATAGATTTAGTTTATATTTT CATATAATCCACATGGATCATACATTCTTATCATCAAGAGGCAACACAGCCATGACTACTATATTGCTGCTTTTTGGGAT ATTAATTTCTACCACAGTAGAATTTACAGGTCTGTCTCTCTGTCTCAATAAAGGGCAAACATAGAATTCCTAAATTCACA TTGTCAGAAATCTGAACTGTTTGATTAAGATTAAACGGTTCAATATAAAATGAGCTGATTGATCATGATCAGACAATGTA ATTTTTTTGACTACGTGAATGTAGGATTGTCCTGCGAGCCCAAGTCCTGCTCTCCTTCATGCTCACTTACTTTTGGTTCA ATATGACACATGCATGCAGGTGCACAATCCGTGGGTGTGTGCTATGGAGCAAATGGAGACAACCTCCCAAGTAGGCAAGA AGTGGTGGATTTATACAAATCCAAGGGAATTAGCAGAATGCGCATCTATGATCAAGATGAAGAAGCACTTCAAGCTCTAA GAGGTTCAAACATAGAGGTCATCCTTGGTGTCCCAAATGACAAACTCCAATCTCTAACCGATGCTGGAGCTGCCAATGAT TGGGTCAACAAGTATGTCAAAGCCTACTCTGATGTCAAGATCAAGTACATTGCTGTCGGTAACGAAGTTCCCCCCGGTAA GGAGCTATCAATCATTCAAAACAATTTATAGATAGGTCATAAACTATTTACATACACTCTATAATTCTCTGTGCCGACAA ACTCAAATAAGCTCTTTCGAATGAGATTAGTTTAACTTTCACCTTCATTCCTAATTTTTTCTGATTTCCTCTCCTCCGCA GGTGATGCTGCTGCCGGGTCAGTTCTCCCGGCTATGAGAAACATCCAGAATGCAATCTCTTCAGCCAATTTACAAGGCCA GATCAAGGTCTCCTTAGCCATAAAAACCTCCTTGGTAGCCAACCCCTATCCACCAGAAAACGGTGTTTTCAGCGACGAGG CAAGATCATACATAACACCCATAGTTGATTTTCTCAAAAGCAATGGAGCACCCCTTCTAGCCAATGTCTACACATACTTC GCCCATGTGGATGATCCTCAACACAATAGTCTCAACTACGCATTGTTCACCCAACAAGAGAAAAACGATGCTGGGTATCA GAATCTCTTTGATGCAATCTTGGATGGTGTGTATGCTGCTCTTGAGAAAGCAGGGGCACCTTACATGAAGGTTGTGGTGT CTGAGAGTGGATGGCCCTCTGCAGGTGGAGATGCAGCCAATGTTCAAAATGCTGAAAGTTATTACAAGAATTTGATCCAA CATGTTAAGGGCGGAACTCCAAAGAGGCCTAATGGACCCATTGAGACTTACCTTTTCGCGATGTTTGATGAGAACCGGAA GCCGGATCCAGAAACTGAGCGGAACTTTGGTCTCTTTAGACCTGATAAATCAGCTAAGTACCAGATCAGTTTCAATTGAA CTAGTGGTTGCTGATTGATAATGATCATGGTTAATAAACTGAATTGGTGTCACTTAGAATAAGGGTACCTAGTAGTAGTA CCCATGCTTTTAGTTTTGCTGCACCAAGAATAATATAGTATGATGCTTCTGATAAATGCTTTTGTATGGCTTTATATCAA TTATTACTATAATACAATTTAAACCCTTTTTACTTTA
CDS sequence (LotjaGi3g1v0535300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCATACATTCTTATCATCAAGAGGCAACACAGCCATGACTACTATATTGCTGCTTTTTGGGATATTAATTTCTAC CACAGTAGAATTTACAGGTGCACAATCCGTGGGTGTGTGCTATGGAGCAAATGGAGACAACCTCCCAAGTAGGCAAGAAG TGGTGGATTTATACAAATCCAAGGGAATTAGCAGAATGCGCATCTATGATCAAGATGAAGAAGCACTTCAAGCTCTAAGA GGTTCAAACATAGAGGTCATCCTTGGTGTCCCAAATGACAAACTCCAATCTCTAACCGATGCTGGAGCTGCCAATGATTG GGTCAACAAGTATGTCAAAGCCTACTCTGATGTCAAGATCAAGTACATTGCTGTCGGTAACGAAGTTCCCCCCGGTGATG CTGCTGCCGGGTCAGTTCTCCCGGCTATGAGAAACATCCAGAATGCAATCTCTTCAGCCAATTTACAAGGCCAGATCAAG GTCTCCTTAGCCATAAAAACCTCCTTGGTAGCCAACCCCTATCCACCAGAAAACGGTGTTTTCAGCGACGAGGCAAGATC ATACATAACACCCATAGTTGATTTTCTCAAAAGCAATGGAGCACCCCTTCTAGCCAATGTCTACACATACTTCGCCCATG TGGATGATCCTCAACACAATAGTCTCAACTACGCATTGTTCACCCAACAAGAGAAAAACGATGCTGGGTATCAGAATCTC TTTGATGCAATCTTGGATGGTGTGTATGCTGCTCTTGAGAAAGCAGGGGCACCTTACATGAAGGTTGTGGTGTCTGAGAG TGGATGGCCCTCTGCAGGTGGAGATGCAGCCAATGTTCAAAATGCTGAAAGTTATTACAAGAATTTGATCCAACATGTTA AGGGCGGAACTCCAAAGAGGCCTAATGGACCCATTGAGACTTACCTTTTCGCGATGTTTGATGAGAACCGGAAGCCGGAT CCAGAAACTGAGCGGAACTTTGGTCTCTTTAGACCTGATAAATCAGCTAAGTACCAGATCAGTTTCAATTGA
Protein sequence (LotjaGi3g1v0535300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHTFLSSRGNTAMTTILLLFGILISTTVEFTGAQSVGVCYGANGDNLPSRQEVVDLYKSKGISRMRIYDQDEEALQALR GSNIEVILGVPNDKLQSLTDAGAANDWVNKYVKAYSDVKIKYIAVGNEVPPGDAAAGSVLPAMRNIQNAISSANLQGQIK VSLAIKTSLVANPYPPENGVFSDEARSYITPIVDFLKSNGAPLLANVYTYFAHVDDPQHNSLNYALFTQQEKNDAGYQNL FDAILDGVYAALEKAGAPYMKVVVSESGWPSAGGDAANVQNAESYYKNLIQHVKGGTPKRPNGPIETYLFAMFDENRKPD PETERNFGLFRPDKSAKYQISFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 42 | 42 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| PANTHER | 19 | 341 | 323 | 2.6E-150 | – | |
| PANTHER | 19 | 341 | 323 | 2.6E-150 | – | |
| Phobius | 25 | 42 | 18 | - | – | |
| Gene3D | 35 | 343 | 309 | 4.0E-132 | – | |
| Pfam | 37 | 342 | 306 | 5.0E-108 | ||
| SUPERFAMILY | 37 | 342 | 306 | 5.71E-92 | ||
| Phobius | 43 | 343 | 301 | - | – | |
| ProSitePatterns | 260 | 273 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0535300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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