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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0537900 |
| Transcript ID | LotjaGi3g1v0537900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (DUF1218); TAIR: AT5G17210.1 transmembrane protein, putative (DUF1218); Swiss-Prot: sp|A5EY04|FTSW_DICNV Probable peptidoglycan glycosyltransferase FtsW; TrEMBL-Plants: tr|I3SS16|I3SS16_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0537900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95451054..95454116) extracted from Lotus japonicus Gifu genome v1.2.
AGCATTTATTAGTAATTAATCTTGGATTTTTTGTTTTGGTTGGTCACTTTCGTGGTCGTGTCTTCATCCTCTTGTTTATT CCAGACAGAATCAAGTTTCCTGGCCACTTCTCACCAACTTCACAACACTCACACTCACAGTGATTGAAAGAGACACCAAA AACACGAGAGAGATGGAGAAAAAGGTTCTGGTCGTGTGCTTCGTTGTGGGTTTTCTGGGACTGTTGGCGGCTGCAACTAG CTTCGGTGCTGAAGCAACCAGGATTAAGGTTTGTGTTTTCTTCCATTTCTTGGTTGCCCAGAAAACCCCATCAAGTAAAG TTTTGATTTTGGCTTAGTTTCATTGGTTTATTTCATCATTGATTATTGGGTCTAGTTGTTGTGGTTAGCATGGTGAAGGG TTCACTTTTATAAGTTAGGGATAGGTGTGAAGTTTTCAAATTTCTGATTTTTGAGGATTTACTATGTAGCTACCTTCCTC AGCTATCTAACTGAGAATTTTTATTGATCCCCCACTTCTTCTTTTGGTTGATTTCACTGTTAATCTGAAGCATTGAACTT AACCTAGAGTGTACACTGTATTGTATCTATGTGTTTGTTAAGCTTTCCCTTTCACTTGTTATCTACAGCAGTTAGTGCAT GTTTGGACTTTAGAAATTCTTCTACAATTGAACCTGAAGCTAAAATCAAGTCTGGGGGAAGCTTATTTGTATAGCTTCTG GGTGTCAGAATTGATTCCGGGCAAAGATAGGTGATCCAAACATGCTATTAGTCGGATATCCTTTGGACCAAAATGCGGAT GTGGGGGGCGGGGGGATGATTCAGTTTTAAGTAATATATTATTCAAGTATTTGTTCAAGAATAACTATGACTCTTGTAAA TTCTTCAGGGTTCTCAAGTTCAGTTTATCACATCAGATCAGTGCATGTATCCTCGAAGTCCTGCTCTACCTCTTGGTTTC ACTGCAGCAATGGCTCTTATGATATCTCAAATAATCATAAATGTTGCAACAGGGTGTATTTGTTGCAGAAAAAACGCACA AATCCCAGATTCCAATTGGAGAGTGGCACTGATCTGCTTTGTTCTATGTTGGTAATTTTCACCACGTACTTTTTGTTTTA TCATATTCCCGTTTTACTGTGCTGGTTTTGTCAAATATCAATCAGATAGTTAACCCCGTGAGGCATAACTTAGGCCGGTA TGAGCTTGTGGATTTACTGTCTTAGAGGATTTGGCTCGTAAAAGCGCAGACCTTAGTCTATAGGCTGCAAATTTGGATTT GGACAATTCATCTGCAGGGAATATCTAAAGTAGATTGGGAATTGCTGTGCAGACTATATGACATTGATATTTTTGAAAGA ATCTGCGCATTTCTTGTGTCAGTTCCTTCATGCTTAGATTAATATTTTTAGTTGTTATGTTCTATAAAATGCGCGTGGAC ATCAGGATAACACATTATTTGATAACAAAAGATGGATTGAATAAAAGCACTTTGAGCTTTGAGATCTCTTCTTTAAAGGA GAGGTGATACTTATATCATACTTGTGATTGAAAGTCAGTTGAAGCAAGTTCGTTGAATCACCAGAACAAGGTTCAATCAT TCATGCTGACTAGTGAAAGTGTTTAATTTTTTTAATTCGCCAAATTTTATAAATTTATAGAAATGATAGCTCATCATTTT CATTTGCGAGGTGCTGTGCAAAAGATACCACTTTCCATTGCTTCTTTTTCTAATACATTATTTGAGATATAACTATTATT CTTTGATTATATGTACTTAAAAGTTTGGTTGTAGAAACATAACAATGTGCCTTGATTTTATTGAAAGTTCATATCAATTG CGTTCATGCCTGCGCGCACACACACACACACATGCGCCACACACACTCACATACCTTTCCGGTAGTAAATGTCCTGTTCC TGAACATACTTGGAAGAATTATTTATTTGAGCATGTTTTTTTTTTTCATATATAATTTGATGGTTGAACTTGTTTGACTG GTTATTGACAGAACATAAGTTAAGTTTGTTCTGTCCTATAAGTACATTGGTTTTGTTTGTGGAATTGGATTTAGTATCTG GAACATCAACTGCTTTCTCATGCCAAGTCTTTGTGCTGAGTAGAGTACTTCTGCTAGTTATTACATGGTTGAAATCTCTG TTCAAACAGGTTTACATTTGTGATGGCATTTCTCCTGTTGCTAACTGGTGCTGCGCTGAATGATCAACGCGGTCAAGAGA GCATGTACTTTGGCTCCTACTACTGCTATGTTGTCAAACCTGGAGTTTTTGCTACCGGTGCAATGTTATCTCTTGCAAGT GTTGCATTTGGAATCATATATTACATTACCTTAACTAAGGGAAAGAGTGCTGGCGGTGATTCCTCATATCCTAATCAAGG GAATATAGCCATGGGACAACCACAGATCCCACCTCAGAGTACCCAGCCAGTATTTGTGCATGAGGACACTTACATCAGAC GACAGTTCACATGATCATAACAGCTTTCAGCTTTTAGCTAGGTTATTAACACTCAGATTCCCCAACTTAAGCTTGGCTAG TGTAAGTGTTGAGATTGCTCTGATCAAAACATGGTTTCTTTTGTGTATGCCTAGGAAGTAGTGTTTCTTAGTATATATGT ATCCCATGAAAGTGCTTTTGAAGGAGTTATGATATTAGCCATGTTTATAATTCGATGGTGCAGTAAAAATAAATTGAGAT ATTGACTCCTTATACTCTTGGCAGAAGATACATGTGGGAGTAGATCTTCTAATCACATTTAAAATATTCATAAGGGTGTA AATGCTTAAATGGCAGCATATGAAATTGTGAGCCACGGTGCTCACACCGCGACACGGCCAACCTCTGAAAAGTAGGGCTG ATTTTGGTCCGTGAATTGTGCTACATCAATGCTATTGCATCAAGTCTGTGGCTTGAGTGGCATATCTATAGAAGATATTG ATGTTTGCATACTTGACTGAATTTGTTTTTTCATAATTATATGGGAAATGAGCACACATTGAGCGTGTACGTCATGTTCA TATATCTGTATATCACTAAAAAA
CDS sequence (LotjaGi3g1v0537900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAAAAGGTTCTGGTCGTGTGCTTCGTTGTGGGTTTTCTGGGACTGTTGGCGGCTGCAACTAGCTTCGGTGCTGA AGCAACCAGGATTAAGGGTTCTCAAGTTCAGTTTATCACATCAGATCAGTGCATGTATCCTCGAAGTCCTGCTCTACCTC TTGGTTTCACTGCAGCAATGGCTCTTATGATATCTCAAATAATCATAAATGTTGCAACAGGGTGTATTTGTTGCAGAAAA AACGCACAAATCCCAGATTCCAATTGGAGAGTGGCACTGATCTGCTTTGTTCTATGTTGGTTTACATTTGTGATGGCATT TCTCCTGTTGCTAACTGGTGCTGCGCTGAATGATCAACGCGGTCAAGAGAGCATGTACTTTGGCTCCTACTACTGCTATG TTGTCAAACCTGGAGTTTTTGCTACCGGTGCAATGTTATCTCTTGCAAGTGTTGCATTTGGAATCATATATTACATTACC TTAACTAAGGGAAAGAGTGCTGGCGGTGATTCCTCATATCCTAATCAAGGGAATATAGCCATGGGACAACCACAGATCCC ACCTCAGAGTACCCAGCCAGTATTTGTGCATGAGGACACTTACATCAGACGACAGTTCACATGA
Protein sequence (LotjaGi3g1v0537900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKKVLVVCFVVGFLGLLAAATSFGAEATRIKGSQVQFITSDQCMYPRSPALPLGFTAAMALMISQIIINVATGCICCRK NAQIPDSNWRVALICFVLCWFTFVMAFLLLLTGAALNDQRGQESMYFGSYYCYVVKPGVFATGAMLSLASVAFGIIYYIT LTKGKSAGGDSSYPNQGNIAMGQPQIPPQSTQPVFVHEDTYIRRQFT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 1 | 190 | 190 | 7.7E-86 | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 190 | 190 | 7.7E-86 | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 5 | 20 | 16 | - | – | |
| Phobius | 21 | 28 | 8 | - | – | |
| Phobius | 29 | 51 | 23 | - | – | |
| Phobius | 52 | 79 | 28 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Pfam | 58 | 151 | 94 | 2.4E-26 | ||
| Phobius | 80 | 90 | 11 | - | – | |
| TMHMM | 89 | 111 | 23 | - | – | |
| Phobius | 91 | 117 | 27 | - | – | |
| Phobius | 118 | 136 | 19 | - | – | |
| Phobius | 137 | 159 | 23 | - | – | |
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 160 | 207 | 48 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0537900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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