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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0538400 |
| Transcript ID | LotjaGi3g1v0538400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor; TAIR: AT3G03120.1 ADP-ribosylation factor B1C; Swiss-Prot: sp|P91924|ARF_DUGJA ADP-ribosylation factor; TrEMBL-Plants: tr|I3SEX0|I3SEX0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0538400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95480938..95483450) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTGGTCTTGATGCTGCTGGAAAAACAACTATACTGTACAAGCTTCACATTGGAGAAGTTTTATCTACTGTTCCTAC TATTGGTGTGTTTTATTCTATAAGCTCATTATTTAATTAATTGTTTTCTTTGTTAAGTTTTCTTAAATACTTGTTTTAGT TGGTTTAGGATGGTGAATCTCTGTTAGCAATGAGTATGTTGTGTGAATTCAATGGATGCTAGCATGTAATCGTGTTTCAG TTTAGTCGAAGGAAAATTAGAAGTGGAAATAATCTATATATGTTATTTGAGGGTTTGTCAAATTGTATTGTTTTGCAGGT TTCAATGTGGAGAAGGTTCAGTATAAGAATGTTATTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAACTTAGGGCACT TTGGAGGCACTATTTTAACAATACAGATGGTTTGGTAAGAACTAATTCCCATGTTTTTATGTTTTTTTTAACACACAAAT CTTGTCTTTTGGCTGTTATGTAAAATGTTTCTTGTGTTACAATCGTCCATTTATCCATTGTTATCCATATCTTATGATAC GTATCTCGATACGATACAAGTTTTCAAGGCCCCGATACGTATCGCACTGTGAATCTAAAATGAACTTGAATCTCTGTCTG TATCTCCAAGTCTGAGCTGAATTGTCAGGCTGATACATATGTGCACATTTATGCAGATTTATGTTGTTGATAGTCTGGAC CGTGAGAGGATTGGGAAAGCAAAGCAGGAATTTCAGGTGATAAAATAAAAAAGTACACATGCACACACACACACACACTC ACTATGTTACTCCAAGCAGACTTTGAATTTAACAGTGGATTACTTGCAGACAATCATAAACGACCCATTTATGCTCAACA GTATTATCTTGGTCTTCGCCAACAAACAAGATCTGGTACGTCCTTTTCACTTAACCAGGCTTTCGGCTGAATGACCTGAC ATCTATGGTTATCTTTATATGTGATTATCTTTTATGTTGGGATTTTTCAAGAAATATGAACCAACTTATGGGGAAACCTA AAACAAATCTATGCCTCAGAAAAAAATAAAGCATTTACTGAGTGAGATTTGCTCCCATCATAGGTCCAATTGTGTTCCAG TGACAATCTGACATGATGCAAAAGTTATTGTTTAATTAGATAGAGAAGTACTTTCAGCAAACCCTCTTTTATTGGTTGAT ATTTATGTTGGTTCCATTAAGTTTGGAGTGAAATCCACCAAATTGGAAGTGGGATCTATATAAGAGAGTATATTAGAGAA TATGCTTTTAGCATTTCTCATTTAGGAAACACCTTGCATGGAAGGTTGGCTCTCACAAACAATTTTCTTATATATATTGT CGAAAGTAATTTGAATTTAAATGTGGTGGGGAACTCAGTAACTGGAGATATTTGACAGAGGATTAGCTCTTTGTAGATTT TCTTTATTTGTGTGTGCATATTTCCTATTGTATATTTGGTTCACCAGTTAATACAGCGCATGCATGTTTCATGAAAAATG ATCCTCTCCATCCAAGTTATGTGCAGCATCTCTCCTGCAAGATACTGCTCATGCATGTTTCTTGCATGGATAAGACTGCT CATTGCTCAATGAGAGAGTGGTTGGTTAAAATGGTTCTGCAATTGATAATATTTAGCCATTTTATTTGCTGTAGAGGCAG GAAGGCTGGAGAGGATCTAAGTCCTTGTTTCATCCCATTTTGGGAACATTGAGTCAATTTTGATCTTGCAGTAATATTTT TTTTTTTGCTTTGTTTCTGACTTACTGTTATCGAAATTAGAACAAAGAAAAACTTTCGGATAGTCCAATCTCTGTAATTT TGACAAATCTCAAGGGAGGTCAGAGTAATTTCTCAAAATTTTAATTATCAAAGCACCCAAGATAAAAAAAATGAACAAAA ACATATTTTTCTGTTCTCTGGTTAACTTTTTCTATTTAAATATTTTTGTTTGTGTTTCTCCAGCATCCCGTATGACCATT AAAAATTTAGATGCCAGGAAGACTTTCTGATTTTTGTTTTTTCACTTTTGGATGGAATTTTTGAAACTTCCATTACACAT TCAGGTTGAATTCTGACATGTATACCACTTGAGTCCATCATGTTATCTTTAGTAAAAGCGCGACTGACTCAGTTTTCTTT CTCAATATGTGTAGTTTCATCAATGGAAGTTCCTAGTACTCAAAATTAACCTGCACTTTTATACTATTATCAATATCTAG CAATGCTAGCAGACAATTCTTCTTGAACAAATTCCTCCAAATAAATGTAAACAATATTTTCCTTTTTATTTCCAGAGAGG AGCGATGACGACAAAGGAAGTATGTGATGGACTGGGTCTGTTTGATCTCAAGAATAGACAGTGGCACATACAAGCCACTT GTGCGCTTAAGGGGGATGGCCTTTATGAAGGCTTGGACTGGTTGTCCTCAACTCTCAAGGAGAGGAATGCTGCTGGATAC TCGTCAATAGGACTAGGAACTGCATCCTTCTAA
CDS sequence (LotjaGi3g1v0538400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGGTCTTGATGCTGCTGGAAAAACAACTATACTGTACAAGCTTCACATTGGAGAAGTTTTATCTACTGTTCCTAC TATTGGTTTCAATGTGGAGAAGGTTCAGTATAAGAATGTTATTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAACTTA GGGCACTTTGGAGGCACTATTTTAACAATACAGATGGTTTGATTTATGTTGTTGATAGTCTGGACCGTGAGAGGATTGGG AAAGCAAAGCAGGAATTTCAGACAATCATAAACGACCCATTTATGCTCAACAGTATTATCTTGGTCTTCGCCAACAAACA AGATCTGAGAGGAGCGATGACGACAAAGGAAGTATGTGATGGACTGGGTCTGTTTGATCTCAAGAATAGACAGTGGCACA TACAAGCCACTTGTGCGCTTAAGGGGGATGGCCTTTATGAAGGCTTGGACTGGTTGTCCTCAACTCTCAAGGAGAGGAAT GCTGCTGGATACTCGTCAATAGGACTAGGAACTGCATCCTTCTAA
Protein sequence (LotjaGi3g1v0538400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRALWRHYFNNTDGLIYVVDSLDRERIG KAKQEFQTIINDPFMLNSIILVFANKQDLRGAMTTKEVCDGLGLFDLKNRQWHIQATCALKGDGLYEGLDWLSSTLKERN AAGYSSIGLGTASF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 155 | 155 | 1.22363E-102 | – | |
| Pfam | 1 | 155 | 155 | 4.2E-65 | ||
| TIGRFAM | 1 | 117 | 117 | 5.8E-20 | ||
| SMART | 1 | 160 | 160 | 3.5E-82 | – | |
| PANTHER | 1 | 167 | 167 | 4.4E-104 | – | |
| SMART | 1 | 156 | 156 | 5.6E-9 | – | |
| PANTHER | 1 | 167 | 167 | 4.4E-104 | – | |
| Gene3D | 1 | 156 | 156 | 1.7E-59 | – | |
| ProSiteProfiles | 1 | 156 | 156 | 21.55 | – | |
| SUPERFAMILY | 1 | 160 | 160 | 4.53E-53 | ||
| PRINTS | 26 | 50 | 25 | 2.4E-9 | ||
| PRINTS | 53 | 78 | 26 | 2.4E-9 | ||
| PRINTS | 98 | 119 | 22 | 2.4E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0538400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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