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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0540700 |
| Transcript ID | LotjaGi3g1v0540700.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Prohibitin, putative; TAIR: AT2G20530.1 prohibitin 6; Swiss-Prot: sp|Q9SIL6|PHB6_ARATH Prohibitin-6, mitochondrial; TrEMBL-Plants: tr|I3SJG9|I3SJG9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0540700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95795160..95796999) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATTTCAAGAACGTCAATGTCCCAAAGGTTCCTGGCGGTGGAGTTGCTGCTTTGCTCAAAGTCAGCATTATCGGTGG GCTTGTTGTGTATGGGGCTACTAACAGCTTGTACAATGTTGAGGGTGGTCATCGTGCCATTGTCTTCAACCGTATTATCG GTGTCAAAGATAAGGTTCATCATAGTTAGATAGATAATTAGACCTATGTTGAATGAATAGTAACCTTGTTGCATAATATC AATTTCTTATCCGCAGGTCTATCCTGAAGGAACACATATCATGATTCCTTGGTTTGAGAGGCCTGTCATTTATGATGTTC GTGCACGACCTCATTTGGTCGAGAGTACTTCAGGAAGCCGCGATCTCCAAATGGTCAATCTCAACTCTCAACTTGTTCAC CCATTTCCCCCTTTTATTTGAACCATTACATTCTACCACTATGATATTCTATATTTATGGTGGAATTGTTAATACTTTTG TTATTAGGATCATGCAAAAAGCTTTACTCTATTTGTGTATGGACAGTTTTTTCAGTTCTCTTGACTCTTCATTCTTATTC GATGCAGCATAGACCACGGTGGTTTTACTACATTTTCCATTGACCATAGATCTTTTGTTTTGCTAGGTGAAAATTGGACT TAGGGTCCTTACCCGTCCTCTACCAGACCAATTGCCTACCGTTTATCGTACTCTGGGTGAGAATTATAATGAAAGGGTCC TACCTTCTATTATACATGAAACTCTCAAAGCTGTTGTTGCACAGTATAATGCCAGTCAGCTCATTACCCAGAGAGAGGTT AGTATTTACAAAGATCCTCCGCTATCTTCTGCTCAATTAGTAACTGGATTAATTTTTACTATGCCTCTTTATTCCTCAGT TGGGATTTGTATTCTTTGAAATCAAGTGAATTACAACCTTATGGTTGAGACTGATTATTTGTTAAACGTGCTATTGTACA GAATGTTAGTCGAGAAATAAGGAAGATATTGACTGAAAGGGCCTCCCAATTTAATATTGCTTTGGATGATGTTTCAATCA CAAGTTTGACGTTTGGGAGGGAATTTACAGCTGCAATTGAAGCCAAGCAGGTTGCTGCTCAAGAAGCTGAGAGAGCTAAA TTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTCATTAGAGCACAGGTAAAATACTAACCCACCCCTACATT TATGATGGTCATTACTATCTCTAGAAGTTACTTGCCATGCTTCAATGATTTCGGAATTGGAATTGCTACTAAACCATACA AAATAAAATAAACAAAGAAAGTGAAAGGAATAATCGTTTTTAAGGTATTTGCTGATTGTCCTGCTTGAGTGGTACATCTT GACTGTTAATTATAACTATTGTTGAACTTCACCAACACTGAAGAATTATGAACGAAGCTTCTACTCCTGCTTCCTCCCTA GCTTTTTTTTCTTTTCTTTTTAATTGTCCTGTCCTGTCTGTAACTAGTAAATAGTAATGTATGGATAAGCTATCCAGAAA GGAAGTTAAATTTCTTTCAGCGTGACGCCATAGTATTTTTTTCTACGAAACAATATAGATGGCTGCTTTTACAACTCATC ATTATTTGATGTATTCCTTATTTTTTATTACTTTTTGACAAACAGGGTGAAGCCAAGAGTGCCCAGTTGATTGGTCAAGC GATTGCCAATAATCCTGCATTTATCACCTTAAGGAGAATTGAAGCTGCTAGGGAAATTGCTCATACAATTTCAAATTCTG CCAACAAGGTTTACTTGAATTCGGATGATCTCCTATTGAATCTTCAGGGGTTGAAGTTGGAACCTGTTGGGAAGAGATAG
CDS sequence (LotjaGi3g1v0540700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTTCAAGAACGTCAATGTCCCAAAGGTTCCTGGCGGTGGAGTTGCTGCTTTGCTCAAAGTCAGCATTATCGGTGG GCTTGTTGTGTATGGGGCTACTAACAGCTTGTACAATGTTGAGGGTGGTCATCGTGCCATTGTCTTCAACCGTATTATCG GTGTCAAAGATAAGGTCTATCCTGAAGGAACACATATCATGATTCCTTGGTTTGAGAGGCCTGTCATTTATGATGTTCGT GCACGACCTCATTTGGTCGAGAGTACTTCAGGAAGCCGCGATCTCCAAATGGTGAAAATTGGACTTAGGGTCCTTACCCG TCCTCTACCAGACCAATTGCCTACCGTTTATCGTACTCTGGGTGAGAATTATAATGAAAGGGTCCTACCTTCTATTATAC ATGAAACTCTCAAAGCTGTTGTTGCACAGTATAATGCCAGTCAGCTCATTACCCAGAGAGAGAATGTTAGTCGAGAAATA AGGAAGATATTGACTGAAAGGGCCTCCCAATTTAATATTGCTTTGGATGATGTTTCAATCACAAGTTTGACGTTTGGGAG GGAATTTACAGCTGCAATTGAAGCCAAGCAGGTTGCTGCTCAAGAAGCTGAGAGAGCTAAATTTGTTGTAGAAAAAGCTG AACAAGACAAAAGAAGTGCTGTCATTAGAGCACAGGGTGAAGCCAAGAGTGCCCAGTTGATTGGTCAAGCGATTGCCAAT AATCCTGCATTTATCACCTTAAGGAGAATTGAAGCTGCTAGGGAAATTGCTCATACAATTTCAAATTCTGCCAACAAGGT TTACTTGAATTCGGATGATCTCCTATTGAATCTTCAGGGGTTGAAGTTGGAACCTGTTGGGAAGAGATAG
Protein sequence (LotjaGi3g1v0540700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNFKNVNVPKVPGGGVAALLKVSIIGGLVVYGATNSLYNVEGGHRAIVFNRIIGVKDKVYPEGTHIMIPWFERPVIYDVR ARPHLVESTSGSRDLQMVKIGLRVLTRPLPDQLPTVYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRENVSREI RKILTERASQFNIALDDVSITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAIAN NPAFITLRRIEAAREIAHTISNSANKVYLNSDDLLLNLQGLKLEPVGKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 289 | 289 | 2.5E-194 | – | |
| PANTHER | 1 | 289 | 289 | 2.5E-194 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| SMART | 36 | 197 | 162 | 8.9E-46 | ||
| CDD | 37 | 231 | 195 | 1.09472E-90 | ||
| Pfam | 39 | 215 | 177 | 2.4E-25 | ||
| SUPERFAMILY | 68 | 204 | 137 | 4.84E-16 | ||
| Gene3D | 76 | 199 | 124 | 1.2E-5 | – | |
| PRINTS | 80 | 96 | 17 | 7.0E-65 | ||
| PRINTS | 98 | 117 | 20 | 7.0E-65 | ||
| PRINTS | 121 | 139 | 19 | 7.0E-65 | ||
| PRINTS | 144 | 160 | 17 | 7.0E-65 | ||
| PRINTS | 167 | 186 | 20 | 7.0E-65 | ||
| PRINTS | 192 | 215 | 24 | 7.0E-65 | ||
| Coils | 196 | 216 | 21 | - | – | |
| PRINTS | 215 | 231 | 17 | 7.0E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0540700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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