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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0541900 |
| Transcript ID | LotjaGi3g1v0541900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cation/H(+) antiporter; TAIR: AT3G17630.1 cation/H+ exchanger 19; Swiss-Prot: sp|Q9LUN4|CHX19_ARATH Cation/H(+) antiporter 19; TrEMBL-Plants: tr|G7JST6|G7JST6_MEDTR Cation/H+ exchanger 3; Found in the gene: LotjaGi3g1v0541900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95861396..95866180) extracted from Lotus japonicus Gifu genome v1.2.
TATCTGTTACATTCTGCTTCATTTTATCTCATAATTTCAATCAATTCGAACACGAAACGTGCCTCTTTAATCACTACATG ATTCCATGGATTTGTAATGTTTTGGTTTCAATAAATAAAAGGAACGAATATTAATTTCAACAAACAAAGGACATTGCACT CGGGTCACAAACACTAGACTAACAATATACTATATATAACATGTGAGTAAACTCGAACCTTTATTGTCTTTCACGAATAG CCATCTAGCACTAGCAGAATTTGCGTTAGTGTGTGTTCACAAATGAAATGATCACCAGCACACAATTGGTAATGCCTTCT CTTACTTATTTCTCAGCCTCAGCTACCATAATTGGCAACTTTTTTGCAAGCCTTTTCTATTCTGACATAAGAGATAGAAG AAACTCTCATTCTGTGTGCATGAAACTTGGTGTTTCTTAGTCTGAATCAATTGCAATGGAGACTCATAATTCAACATGTC CACCACCAATGAAGGCCACATCAAACGGGGCGTTTCAACATGAGAACCCCATGGATTATGCACTTCCTTTATTGATTGTG CAGATATGTTTGGTTGTGGCATTTACCAGATTCCTTGCATTCCTTTGCAGGCCCCTTAGACAACCTAGAGTTATTGCAGA AGTCATTGTAAGTCTCCTTTTCCAATGATATGACTGTTGTTTGGTTTCACCTGTGATCAAACTCAACCTCTGAATCATGA TCATGGCTATTTAAACTGTCTTTTCATAAACAAATTCAATGTGGGGTTTGATCCATCTTTGCATTAAAAAACAAATGCAG GGAGGGATATTACTTGGACCATCTGCAATAGGGAGGAGCCAGAAATTTCTGGACACATTTTTCCCCAAGAAAAGCTTAAC TGTTCTTGACACACTGGCTAATGTTGGCCTTCTGTTCTTCTTGTTTCTAGTGGGTCTTGAGCTTGACATGCGTTCTATAC GCAGAACTGGTTACAAGGCCTTATGCATTGCCCTTGCTGGAATCACATTCCCTTTTGTGCTTGGCATTGGCACCTCATTT GCTCTTCGCGCGACCATATCAAAAGATGTTGATCCAGGCTCCTTCCTTGTCTTCATGGGTGTTTCTCTCTCAATCACCGC CTTCCCCGTTCTCGCTCGAATCCTAGCTGAACTCAAACTCCTCACAACCGATGTTGGTCGCATAGCGATGTCTGCAGCTG CTGTCAATGATGTTGCAGCATGGATACTGCTTGCTCTTGCCATAGCACTTTCTGGCAATAACACTTCCCCACTTATTTCC TTATGGGTCCTGCTTTGTGGTGCTGGTTTTATCCTCTTTGCTATCTTTGCTATAAAGCCTTTACTTTCATTAATGGCGAA GCATTCCCCTGAGGGCGAACCGGTGAGGGAGATCTACATTTGCATCACCTTGACAGTAGTCCTGGCTTGCAGTTTTGTTA CTGATACTATTGGCATCCATGCACTCTTTGGGGCTTTTGTAGCTGGCATTGTTGTTCCTAAGGATGGTCCCTTTGCTGGA GTTTTGACTGAGAAGATAGAGGACCTTGTAATGAGTCTATTGTTGCCACTCTATTTTGTGTCAAGTGGATTAAAGACTAA TGTGGCAACCATAAGTGGGGCAACCTCTTGGGGCTTACTATTTCTTGTTGTATTCACTGCTTGCTTTGGAAAGATCCTTG GCACATTTACTGTGTCCATGTTATGTAAGGTGCCTTTTAGAGAAGCCCTCACTCTTGGATTTCTCATGAACACCAAGGGC TTAGTGGAGCTCATTGTTCTCAATATTGGCAAGGATCGCAAGGTATCTATCTATCTTCTCTTGTACACATGATGGTGCTG TCAATAATCAGCAAAAGCAACCATTGAGTTTGAAACTAATTGTTAAAAAAAGTGAAAAACAGAGGAATACAGGGAAAACA CAGAAAACGCAGGCAACATACTTACAAGCGAAGAGAGGATATTAAAGACTTTTGCATAGAATGTTAAGAGTATCGCATTG ATAACTTTTAAGCTTTTATACACATACTGACATACCATATGAAAGGTCTTGCAAAACCAAATACATGATATGTTTACCAA GGCATAAAGCATAAAAGCATCTAAGTCATTAATAACTATTAAGACATCATCATTACTAGGATATTATTACTAACTAGATA ATTATAGATAGAAAAAGAAAAGTCTCCATCTAACACTAATCAAGCATGTTTCTTAAAAATGTGCAGGTACTGAATGATCA GGTATTTGCAATCTGTGTTCTCATGGCATTGGTAACCACTTTCATGACTACCCCAATAGTGATGGCAGTGTATAAACCAG CTAGGAGGGGATCACCTTACAAGCACAAAACAGTTCAGCGCAAAGATCCTGACACAGAATTTCGAGTGCTGGCTTGCTTC CACAGTACCCGCAACATTCCAACCTTGATCAATCTGATAGAATCTTCCCGGGGAACCAGGAAGCGAGGAAAGCTCTGCAT TTATGCCATGCACTTGATGGAACTCTCAGAGAGACCTTCAGCCATCACGATGGTTCATAAGGCTCGCAACAATGGCATGC CATTTTGGAACAAAAGACAGGACAATGAAGATCAGATGGTGATTGCATTTCAGGCTTATGGCCATTTAAGCAGTGTCAAT GTTCGCCCCATGACAGCGATCTCTTCCTTCACCAACATTCATGAGGACATCTGTTCTAGTGCACACCAGAAGCGAGTAGC AATGATTATCCTTCCATTCCACAAACACCAACGCCTTGACGGGACTATGGAGTCACTGGGAAACTCGATCCACACAATGA TTGGTCTTGTGCTCAGCCATGCTCCTTGCTCGGTGGGGATTTTGATTGACCGTGGCCTCGGAGGGACAAGCCAAGTCCAT GCTAGTGATGTGTCCTACAATGTTGTGGTAGTCTTCTTTGGTGGATGCGATGACCGCGAAGCACTTGCCTATGGGATGAG AATGGCAGAGCACCCTGGGATCTTGGTCACTGTTATTAAGTTTGTGACTCCACCGGGGAAGACAACAGCCTTTGGTGCCA AATTGGTTGGTGTATCAGCCAATGAGGATAGGAAGGTAATAAAAGTGACTGATGGCACCACCAAAGACGAAGATAAAGAA GAGGATGACCAATTTTGGTCTGAGTTCCTAAGTGTGTGCTACAAGAGTGAAGACTCCATGGTGTATGAGGAAAGATTGGT GGAAAGCAAAGAAGATGTTGTAACTGCATTGAGGGAAAAGAATAAAAGCAACCTGATTTTGGTAGGTAGAATGCCACCAG TAGCACCTTTGGATGTAAGAAGTGATTGCCCTGAGCTTGGGCCTATTGGTAGCTACTTGGCTTCTTCAGAGTTCTCCACT TCTGCATCAGTCATGGTGTTTCAACAGTATAATCCCAAAACAGACGTTCACCCCTTGGTTATGGAGGTTTCTGATTTCCC CATCATCCCAGACACACCAAAGCATCCTGTATAGGGGGTTGATTGAGAGATGCCCACATAGGGTCAGGATAAAGAACCTG ATAAGCAATGACATGTGGTTATATTTGGTTGACTGATTTTAGACATTAGATTTACATATACCAAATAAAAAGGTACATCA AGTCAGAAGTTGTAAGCTGATTTGATTGAGAATTTGAGGGGTCGTTATAAATCAGAAATAAACCATATTGAGATGCCATA TTTCTGCTTCCATTGAATAGAAGTACAAGGGGTACTTCAACCCAATACAAAAGAAGGAAAATGAGGTAGCGTAGGGAAGT TTATTACACATGAGAGGATCTTGATCCGTAGGATCTGGTTGTTACAGTAAGTTTTATTATATGTTTCAATATAAACCTTC TAGAGTGAATCAAGAGTGGGTTTGAATGATACAGGAAACATTAAAAGAAAAAAAAAGAATTAAACACACTCATATCCAGT ACATTCAACTGCCAGGTTTCTCTTTTTATGTGTCCGGTGTCCCTCTCCCTGCTACAAGAGTATGGCTTTCTTTACACTTT TCCCACCTTGAGAGTTGAGACTTTCCCGTCTTCACTCTTGCACAGTCTTCCGACCATCGAATTAAACCCGGTCCTCGTGT AGCTTACTATTGAAGTTAGAAGCTGTCTGAAATGTGTAATAGAAAAGGTTCATTTAAAACATGTAACACCAGTCTGAACA AATCAAGTTATTTTGTACTTACAATGGTGACCAAGGAGATCGCCCCCCGTTTATGCAGTACAGGAACAAGTATGCATCAT AATGTTGGCCGTTTATTAAATAAAATCCCTGCCGCCTTCTCACACACTTGAAAGACATTTTCTTGTACAGAGAGATTGCT GGATTATTGTCAGAAATTACATGCAAGAAAACAGATAGGCAGGTTGGAGTACTTGAAGCATATTTTATGACCTCCCTAAG CAGAGAAGAAGCTGCAGATGAGATGAGGCACAAATTAGGCTACCAACTATATCATAGAGAACTCTAACAATATTAAAGTG AGAAACAAAGTGCTACCTATTCCAAAATTTCGATAGGCCTCCACTACTCCCAGTGCCAGAATGTGCACTAAAGTTTGATC TGATTTGGATGAGTCATATCCGAGCATATCCAGTACCTACAAGAATAATCAGCAGGAATATAAGATTTCAATCATTCTTA CTCTGAAAAGGGCCTATTCTATTGGCAATTTGGTATTTGATATATATTTCTTGCAAACTTGATTTAATTGGCCATTATCC AACACAGTTAACGGCATAAGAGTATAAGACTAACTAAAAAATAAGCCGCTTAATCAGACTGCGAG
CDS sequence (LotjaGi3g1v0541900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGACTCATAATTCAACATGTCCACCACCAATGAAGGCCACATCAAACGGGGCGTTTCAACATGAGAACCCCATGGA TTATGCACTTCCTTTATTGATTGTGCAGATATGTTTGGTTGTGGCATTTACCAGATTCCTTGCATTCCTTTGCAGGCCCC TTAGACAACCTAGAGTTATTGCAGAAGTCATTGGAGGGATATTACTTGGACCATCTGCAATAGGGAGGAGCCAGAAATTT CTGGACACATTTTTCCCCAAGAAAAGCTTAACTGTTCTTGACACACTGGCTAATGTTGGCCTTCTGTTCTTCTTGTTTCT AGTGGGTCTTGAGCTTGACATGCGTTCTATACGCAGAACTGGTTACAAGGCCTTATGCATTGCCCTTGCTGGAATCACAT TCCCTTTTGTGCTTGGCATTGGCACCTCATTTGCTCTTCGCGCGACCATATCAAAAGATGTTGATCCAGGCTCCTTCCTT GTCTTCATGGGTGTTTCTCTCTCAATCACCGCCTTCCCCGTTCTCGCTCGAATCCTAGCTGAACTCAAACTCCTCACAAC CGATGTTGGTCGCATAGCGATGTCTGCAGCTGCTGTCAATGATGTTGCAGCATGGATACTGCTTGCTCTTGCCATAGCAC TTTCTGGCAATAACACTTCCCCACTTATTTCCTTATGGGTCCTGCTTTGTGGTGCTGGTTTTATCCTCTTTGCTATCTTT GCTATAAAGCCTTTACTTTCATTAATGGCGAAGCATTCCCCTGAGGGCGAACCGGTGAGGGAGATCTACATTTGCATCAC CTTGACAGTAGTCCTGGCTTGCAGTTTTGTTACTGATACTATTGGCATCCATGCACTCTTTGGGGCTTTTGTAGCTGGCA TTGTTGTTCCTAAGGATGGTCCCTTTGCTGGAGTTTTGACTGAGAAGATAGAGGACCTTGTAATGAGTCTATTGTTGCCA CTCTATTTTGTGTCAAGTGGATTAAAGACTAATGTGGCAACCATAAGTGGGGCAACCTCTTGGGGCTTACTATTTCTTGT TGTATTCACTGCTTGCTTTGGAAAGATCCTTGGCACATTTACTGTGTCCATGTTATGTAAGGTGCCTTTTAGAGAAGCCC TCACTCTTGGATTTCTCATGAACACCAAGGGCTTAGTGGAGCTCATTGTTCTCAATATTGGCAAGGATCGCAAGGTACTG AATGATCAGGTATTTGCAATCTGTGTTCTCATGGCATTGGTAACCACTTTCATGACTACCCCAATAGTGATGGCAGTGTA TAAACCAGCTAGGAGGGGATCACCTTACAAGCACAAAACAGTTCAGCGCAAAGATCCTGACACAGAATTTCGAGTGCTGG CTTGCTTCCACAGTACCCGCAACATTCCAACCTTGATCAATCTGATAGAATCTTCCCGGGGAACCAGGAAGCGAGGAAAG CTCTGCATTTATGCCATGCACTTGATGGAACTCTCAGAGAGACCTTCAGCCATCACGATGGTTCATAAGGCTCGCAACAA TGGCATGCCATTTTGGAACAAAAGACAGGACAATGAAGATCAGATGGTGATTGCATTTCAGGCTTATGGCCATTTAAGCA GTGTCAATGTTCGCCCCATGACAGCGATCTCTTCCTTCACCAACATTCATGAGGACATCTGTTCTAGTGCACACCAGAAG CGAGTAGCAATGATTATCCTTCCATTCCACAAACACCAACGCCTTGACGGGACTATGGAGTCACTGGGAAACTCGATCCA CACAATGATTGGTCTTGTGCTCAGCCATGCTCCTTGCTCGGTGGGGATTTTGATTGACCGTGGCCTCGGAGGGACAAGCC AAGTCCATGCTAGTGATGTGTCCTACAATGTTGTGGTAGTCTTCTTTGGTGGATGCGATGACCGCGAAGCACTTGCCTAT GGGATGAGAATGGCAGAGCACCCTGGGATCTTGGTCACTGTTATTAAGTTTGTGACTCCACCGGGGAAGACAACAGCCTT TGGTGCCAAATTGGTTGGTGTATCAGCCAATGAGGATAGGAAGGTAATAAAAGTGACTGATGGCACCACCAAAGACGAAG ATAAAGAAGAGGATGACCAATTTTGGTCTGAGTTCCTAAGTGTGTGCTACAAGAGTGAAGACTCCATGGTGTATGAGGAA AGATTGGTGGAAAGCAAAGAAGATGTTGTAACTGCATTGAGGGAAAAGAATAAAAGCAACCTGATTTTGGTAGGTAGAAT GCCACCAGTAGCACCTTTGGATGTAAGAAGTGATTGCCCTGAGCTTGGGCCTATTGGTAGCTACTTGGCTTCTTCAGAGT TCTCCACTTCTGCATCAGTCATGGTGTTTCAACAGTATAATCCCAAAACAGACGTTCACCCCTTGGTTATGGAGGTTTCT GATTTCCCCATCATCCCAGACACACCAAAGCATCCTGTATAG
Protein sequence (LotjaGi3g1v0541900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METHNSTCPPPMKATSNGAFQHENPMDYALPLLIVQICLVVAFTRFLAFLCRPLRQPRVIAEVIGGILLGPSAIGRSQKF LDTFFPKKSLTVLDTLANVGLLFFLFLVGLELDMRSIRRTGYKALCIALAGITFPFVLGIGTSFALRATISKDVDPGSFL VFMGVSLSITAFPVLARILAELKLLTTDVGRIAMSAAAVNDVAAWILLALAIALSGNNTSPLISLWVLLCGAGFILFAIF AIKPLLSLMAKHSPEGEPVREIYICITLTVVLACSFVTDTIGIHALFGAFVAGIVVPKDGPFAGVLTEKIEDLVMSLLLP LYFVSSGLKTNVATISGATSWGLLFLVVFTACFGKILGTFTVSMLCKVPFREALTLGFLMNTKGLVELIVLNIGKDRKVL NDQVFAICVLMALVTTFMTTPIVMAVYKPARRGSPYKHKTVQRKDPDTEFRVLACFHSTRNIPTLINLIESSRGTRKRGK LCIYAMHLMELSERPSAITMVHKARNNGMPFWNKRQDNEDQMVIAFQAYGHLSSVNVRPMTAISSFTNIHEDICSSAHQK RVAMIILPFHKHQRLDGTMESLGNSIHTMIGLVLSHAPCSVGILIDRGLGGTSQVHASDVSYNVVVVFFGGCDDREALAY GMRMAEHPGILVTVIKFVTPPGKTTAFGAKLVGVSANEDRKVIKVTDGTTKDEDKEEDDQFWSEFLSVCYKSEDSMVYEE RLVESKEDVVTALREKNKSNLILVGRMPPVAPLDVRSDCPELGPIGSYLASSEFSTSASVMVFQQYNPKTDVHPLVMEVS DFPIIPDTPKHPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 3 | 806 | 804 | 0.0 | – | |
| PANTHER | 3 | 806 | 804 | 0.0 | – | |
| Phobius | 28 | 47 | 20 | - | – | |
| TMHMM | 29 | 51 | 23 | - | – | |
| Gene3D | 32 | 434 | 403 | 1.2E-101 | ||
| Pfam | 39 | 423 | 385 | 1.0E-63 | ||
| Phobius | 48 | 58 | 11 | - | – | |
| TMHMM | 58 | 75 | 18 | - | – | |
| Phobius | 59 | 75 | 17 | - | – | |
| Phobius | 76 | 94 | 19 | - | – | |
| TMHMM | 90 | 112 | 23 | - | – | |
| Phobius | 95 | 112 | 18 | - | – | |
| Phobius | 113 | 123 | 11 | - | – | |
| Phobius | 124 | 146 | 23 | - | – | |
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 147 | 157 | 11 | - | – | |
| TMHMM | 157 | 179 | 23 | - | – | |
| Phobius | 158 | 180 | 23 | - | – | |
| Phobius | 181 | 191 | 11 | - | – | |
| Phobius | 192 | 216 | 25 | - | – | |
| TMHMM | 192 | 214 | 23 | - | – | |
| Phobius | 217 | 221 | 5 | - | – | |
| TMHMM | 219 | 241 | 23 | - | – | |
| Phobius | 222 | 242 | 21 | - | – | |
| Phobius | 243 | 262 | 20 | - | – | |
| TMHMM | 262 | 296 | 35 | - | – | |
| Phobius | 263 | 296 | 34 | - | – | |
| Phobius | 297 | 340 | 44 | - | – | |
| TMHMM | 332 | 354 | 23 | - | – | |
| Phobius | 341 | 366 | 26 | - | – | |
| Phobius | 367 | 372 | 6 | - | – | |
| Phobius | 373 | 392 | 20 | - | – | |
| Phobius | 393 | 403 | 11 | - | – | |
| Phobius | 404 | 427 | 24 | - | – | |
| TMHMM | 405 | 427 | 23 | - | – | |
| Phobius | 428 | 813 | 386 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Solute:proton antiporter activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0541900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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