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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0543800 |
Transcript ID | LotjaGi3g1v0543800.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | UvrABC system C; TAIR: AT1G12790.1 DNA ligase-like protein; Swiss-Prot: sp|F4IDW9|PTD_ARATH Protein PARTING DANCERS; TrEMBL-Plants: tr|A0A0R0H0J9|A0A0R0H0J9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0543800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95988441..95989924) extracted from Lotus japonicus Gifu genome v1.2.
GTAAATGCATTCTCTTGCTAACTTGTTTAGAATGAGGCCATTATTATTGTAGGTCCAGCTGGAGTCTGTCTGATGAGAAA TGCATGGAAAGAGGATCAACATCCATCCTTCATCAATTTTATCTCCAGTTTCCTCTGTGCCAATTCCTTTCGCCTTAATT TTGTGCCAATTGCCCCAGTAATAGCCTGTTAATGCTTTTTTTTTTGGCTTCTTTTTTCATTTCTTTCAAATACTGGTTCA CCACTCAAATTTGAGGAGTTTCCTTGCAGGACTTTATTTTCAATTGTGGAGGGTTGTCAGTAGCCTTCATTTTTGTAACA AACTGGGACTGCAACTGCGTCGCTCCAATCTTCAACAGGTTACCAAGCTGTTTCTTTCGGAGTCATTAGCCTTGGTTTAT GTTTGAGTAGTATTTGTACTGAGTAAAGACTAAGAGTGATTTGTTTTATCTCTGATTCGAATTTTCTCATGCAGAGTTCA GAAACTGAAGACTCAATTTTCACGTTTTTATGTTGTTGTCACACTCCCAGCAAAAGAACAAATTGATTCATTTACTCAAT CATATTTCAAGTGAGTTTTGTTACTACTCTTCTGGTTGGTTATATTATGCTAATTGCTATCCATGGCTTGCATAACGAAT AAACAAGGACCATTTTTATGGATATGTAAAGATTTGGGATGGTGATTGGCAAGCCTACATTTGTACCTGTTAAGGACTTG GAAATGGGGTTTGAGAAGATAGTAAAAATAGCTCATTCTTCTGGAGGTAGAAACTGAAACTTTAAACTAACTTAATGTGC TGTTCCAATTCATATTTCTCATTATCCAACAAATTGCAGTATACAAGCAGGAGAGAATTGGAGAAAAATTGAAAGCTGAG GTCAGTTGATTGATTCTAAGTGCACACAACTTAACAACTATGAGCCCTTGCGAAATAGAAGTATGAAACTAGCATATCAA TGTACAAACTTTGTTTTTGTTTTGAAGAGGAAGCAGTTGGTGCAAGGAATGGACTTTTACCTCAAAGCCGTTACAGGCAT CCCTGGCATTGACAATCATGATGCAAATGCGGTAAATTCCTCTCTTATGAGGCAACTCTTTAATTCAGTTTTCCTATTTA AACTCGCCAAGGCATAACAGCTACATACAGTTTGTACATTCGTCTTGTATATTTATAGATTATTGCACTCGTCACAAAGT TTTGATGTCATATTAGGATTGTGCTACTCTTCCTAGTTATCGAGGATAGTACACACATGAATAATTTTTCATGTGTGCAA CCATGGTAGCCATGTATATGGTTTGAGTTATTTTGTTATTCTTATTGTTCAATTCAGCTTAGTGCTATTGGTTCTGTCCA AGGAATTGCCAAGGCATCAAAAGAGCAAATTCTGGCAAACACTGATCTTTCTACTGACAAGGCAGAAATAGTTTCAAGGT TTCTCAGGGACCCAGAGTTTTACTTGCGTCCTAAGATCAACTGA
CDS sequence (LotjaGi3g1v0543800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAATGCATGGAAAGAGGATCAACATCCATCCTTCATCAATTTTATCTCCAGTTTCCTCTGTGCCAATTCCTTTCG CCTTAATTTTGTGCCAATTGCCCCAGACTTTATTTTCAATTGTGGAGGGTTGTCAGTAGCCTTCATTTTTGTAACAAACT GGGACTGCAACTGCGTCGCTCCAATCTTCAACAGAGTTCAGAAACTGAAGACTCAATTTTCACGTTTTTATGTTGTTGTC ACACTCCCAGCAAAAGAACAAATTGATTCATTTACTCAATCATATTTCAAATTTGGGATGGTGATTGGCAAGCCTACATT TGTACCTGTTAAGGACTTGGAAATGGGGTTTGAGAAGATAGTAAAAATAGCTCATTCTTCTGGAGTATACAAGCAGGAGA GAATTGGAGAAAAATTGAAAGCTGAGAGGAAGCAGTTGGTGCAAGGAATGGACTTTTACCTCAAAGCCGTTACAGGCATC CCTGGCATTGACAATCATGATGCAAATGCGCTTAGTGCTATTGGTTCTGTCCAAGGAATTGCCAAGGCATCAAAAGAGCA AATTCTGGCAAACACTGATCTTTCTACTGACAAGGCAGAAATAGTTTCAAGGTTTCTCAGGGACCCAGAGTTTTACTTGC GTCCTAAGATCAACTGA
Protein sequence (LotjaGi3g1v0543800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNAWKEDQHPSFINFISSFLCANSFRLNFVPIAPDFIFNCGGLSVAFIFVTNWDCNCVAPIFNRVQKLKTQFSRFYVVV TLPAKEQIDSFTQSYFKFGMVIGKPTFVPVKDLEMGFEKIVKIAHSSGVYKQERIGEKLKAERKQLVQGMDFYLKAVTGI PGIDNHDANALSAIGSVQGIAKASKEQILANTDLSTDKAEIVSRFLRDPEFYLRPKIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 218 | 218 | 2.8E-116 | ||
SUPERFAMILY | 150 | 209 | 60 | 2.15E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Resolution of meiotic recombination intermediates | The cleavage and rejoining of intermediates, such as Holliday junctions, formed during meiotic recombination to produce two intact molecules in which genetic material has been exchanged. |
Expression pattern of LotjaGi3g1v0543800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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