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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR010994
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 31 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.258s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0206689.1
n.a. PREDICTED: transcription elongation factor SPT6-like [Cicer arietinum] gi|502127604|ref|XP_004499769.1| chr0 103036905 103049147 +
2 domain predictions
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Lj0g3v0206689.2
n.a. PREDICTED: transcription elongation factor SPT6-like [Cicer arietinum] gi|502127604|ref|XP_004499769.1| chr0 103036905 103049147 +
2 domain predictions
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Lj1g3v3457470.1
n.a. PREDICTED: kinesin-like protein KIF22-like [Glycine max] gi|356523149|ref|XP_003530204.1| chr1 40055355 40061054 +
2 domain predictions
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Lj1g3v4081780.1
n.a. PREDICTED: transcription elongation factor SPT6-like isoform X2 [Cicer arietinum] gi|502107599|ref|XP_004493315.1| chr1 48159819 48170957 -
2 domain predictions
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Lj2g3v1988980.1
n.a. PREDICTED: DNA repair endonuclease UVH1-like [Glycine max] gi|356541275|ref|XP_003539104.1| chr2 29666151 29670759 +
2 domain predictions
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Lj2g3v1988980.2
n.a. DNA repair endonuclease UVH1 [Medicago truncatula] gi|357482211|ref|XP_003611391.1| chr2 29666151 29670759 +
2 domain predictions
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Lj3g3v3639850.1
n.a. F13K23.4 protein [Theobroma cacao] gi|508725230|gb|EOY17127.1| chr3 44275738 44278249 -
2 domain predictions
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Lj6g3v2222080.1
n.a. PREDICTED: kinesin-related protein 3-like [Glycine max] gi|356529192|ref|XP_003533180.1| chr6 25974130 25975150 -
2 domain predictions
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LotjaGi1g1v0580700.1
n.a. Kinesin-like protein; TAIR: AT5G02370.1 ATP binding microtubule motor family protein; Swiss-Prot: sp|Q5E913|KN10B_ARATH Kinesin-like protein KIN-10B; TrEMBL-Plants: tr|K7L1G4|K7L1G4_SOYBN Kinesin-like protein; Found in the gene: LotjaGi1g1v0580700 LjG1.1_chr1 112017908 112023641 +
2 domain predictions
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LotjaGi1g1v0657000.1
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|I1N8M6|I1N8M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0657000 LjG1.1_chr1 121698183 121709835 -
2 domain predictions
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LotjaGi1g1v0657000.2
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|I1N8M6|I1N8M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0657000 LjG1.1_chr1 121698902 121708758 -
2 domain predictions
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LotjaGi2g1v0140300.1
n.a. Kinesin-like protein; TAIR: AT5G23910.1 ATP binding microtubule motor family protein; Swiss-Prot: sp|F4KEC6|KN10C_ARATH Kinesin-like protein KIN-10C; TrEMBL-Plants: tr|A0A072UBG9|A0A072UBG9_MEDTR ATP-binding microtubule motor family protein, putative; Found in the gene: LotjaGi2g1v0140300 LjG1.1_chr2 51150672 51156160 -
2 domain predictions
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LotjaGi2g1v0418900.1
n.a. DNA repair endonuclease UVH1-like protein; TAIR: AT5G41150.1 Restriction endonuclease, type II-like superfamily protein; Swiss-Prot: sp|Q9LKI5|XPF_ARATH DNA repair endonuclease UVH1; TrEMBL-Plants: tr|K7LMX6|K7LMX6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0418900 LjG1.1_chr2 91727196 91732499 +
2 domain predictions
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LotjaGi3g1v0103300.1
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800399 12813433 -
2 domain predictions
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LotjaGi3g1v0103300.10
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800783 12813408 -
2 domain predictions
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LotjaGi3g1v0103300.11
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800839 12813403 -
2 domain predictions
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LotjaGi3g1v0103300.12
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800839 12813403 -
2 domain predictions
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LotjaGi3g1v0103300.2
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800399 12813433 -
2 domain predictions
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LotjaGi3g1v0103300.3
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800399 12813433 -
2 domain predictions
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LotjaGi3g1v0103300.4
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800605 12813422 -
2 domain predictions
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LotjaGi3g1v0103300.5
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|Q9CAM1|SPT62_ARATH Transcription elongation factor SPT6-like; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800605 12813422 -
2 domain predictions
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LotjaGi3g1v0103300.6
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800768 12813413 -
2 domain predictions
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LotjaGi3g1v0103300.7
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800768 12813413 -
2 domain predictions
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LotjaGi3g1v0103300.8
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800768 12813413 -
2 domain predictions
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LotjaGi3g1v0103300.9
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800768 12813413 -
2 domain predictions
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LotjaGi3g1v0543800.1
n.a. UvrABC system C; TAIR: AT1G12790.1 DNA ligase-like protein; Swiss-Prot: sp|F4IDW9|PTD_ARATH Protein PARTING DANCERS; TrEMBL-Plants: tr|A0A0R0H0J9|A0A0R0H0J9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0543800 LjG1.1_chr3 95988207 95990780 -
2 domain predictions
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LotjaGi3g1v0543800.2
n.a. UvrABC system protein C; TAIR: AT1G12790.1 DNA ligase-like protein; Swiss-Prot: sp|F4IDW9|PTD_ARATH Protein PARTING DANCERS; TrEMBL-Plants: tr|K7LSF1|K7LSF1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0543800 LjG1.1_chr3 95988287 95989453 -
2 domain predictions
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LotjaGi3g1v0543800.3
n.a. UvrABC system C; TAIR: AT1G12790.1 DNA ligase-like protein; Swiss-Prot: sp|F4IDW9|PTD_ARATH Protein PARTING DANCERS; TrEMBL-Plants: tr|A0A0R0H0J9|A0A0R0H0J9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0543800 LjG1.1_chr3 95988441 95989924 -
2 domain predictions
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LotjaGi5g1v0219300.1
n.a. DNA ligase-like protein; TAIR: AT3G05210.1 nucleotide repair protein; Swiss-Prot: sp|Q9MA98|ERCC1_ARATH DNA excision repair protein ERCC-1; TrEMBL-Plants: tr|K7LJM3|K7LJM3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0219300 LjG1.1_chr5 52560915 52570532 +
2 domain predictions
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LotjaGi5g1v0219300.2
n.a. DNA ligase-like protein; TAIR: AT3G05210.1 nucleotide repair protein; Swiss-Prot: sp|Q9MA98|ERCC1_ARATH DNA excision repair protein ERCC-1; TrEMBL-Plants: tr|K7LJM3|K7LJM3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0219300 LjG1.1_chr5 52561004 52566302 +
2 domain predictions
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LotjaGi6g1v0356100_LC.1
n.a. Kinesin-like protein; TAIR: AT5G23910.1 ATP binding microtubule motor family protein; Swiss-Prot: sp|F4KEC6|KN10C_ARATH Kinesin-like protein KIN-10C; TrEMBL-Plants: tr|K7MI42|K7MI42_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0356100_LC LjG1.1_chr6 66767195 66767534 -
2 domain predictions
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