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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0544500 |
| Transcript ID | LotjaGi3g1v0544500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase sigma factor; TAIR: AT1G64860.1 sigma factor A; Swiss-Prot: sp|O24629|SIGA_ARATH RNA polymerase sigma factor sigA; TrEMBL-Plants: tr|I1L5H1|I1L5H1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0544500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96049641..96055390) extracted from Lotus japonicus Gifu genome v1.2.
CGTGGAATGAAGAGAGCAGAGAACGCCAATACAACATACACCACAAAACCCTGGTCCCAATATCTGTTTCAGCCAATAAC ATCTCTTCCTTCCATATCTTTATCTTTTCAAAATTCCCATTTTCATTTTCTATTTTCTTCCAACTAAATTAACTTCATTT ATAAACAAAATTATTATAAATAGAAGTAAGAAAAAAAAACAGAGAAAAATCTAATACCAGCAACAACGTTATTTCCTTGC ATCCACTGATCCATACAAACAGTTTTGTAGTGAAACATTTCCAGTGTGCAGCTGGAGCTGAATCTCAATGATTCTATATT GCTAAGCTACACTTTTGGGGGAATCATCATTGTCCAAACTTCAATATATTATTATTCAGGTACACTCCATCCACCGATAC ACCGTTTTCTATGTTTGTAGATTTTGTATTTTCCATTTAAAATTGAAATTTGGTTGAAACCCATTACTTGTATCCGTTGG TTTTCATTTGGGTACTTCCAGTTTTACTTGCTATGTGCTTGTGTTGTTGTTTTCATAAGGTCTGATAGCATGCTTGATTA TGTGATTGGAAAGCTATAAATTGTAGCTTGGGGACTTGGTGCATATTTATAAATCCTTATACAATTGATTATGGAGCCAG AATCAATTCTGGGGAGAAGTTTTTTTGACTAGCTTATGAATTTCAGAATTGATTATGGGAAGGAAGTGATGAATAATTCA TGAGTTATGCTATAATAGTAGTAATGACTATTTTTGGTTATGCTTTGGGTTATCAGGTGGTTAGCAACGATTTCTGAAGT TGCTGAAAGCAATACTTGGAGGGGGCACGGTTAAGAATCATTGGTATAGTAGGAAATTTTGATGGTAATTATACTTAGTG CATAGGAAGGGGAGTAATGGCTACTGCTGCAGTTATTGGACTCAGTGGAGGGAAGAGGCTATTGAGTTCATCTTACTATT ACTCTGATATTATAGAAAAGCTTTCTTGTAGCAGTGACTTTGGGTCCACACACTATCAGATTGTTCCTGCAAAATCGGTA ACGGTTGCCAAGAAGTCATCCGACTACACACAAGCTTTTCCGGCATCTGATCGGCCGAATCAGTCTATCAAGGCTCTTAA GGAACATGTTGATGGTGTCCCTGCTGCTGCAGAGACATGGTTTCAAGAATGCGATTCTAATGACTTAGAGGTGGAAAGCT CTGACTTGGGTTACTCTGTGGAGGCTCTTCTTTTGCTGCAGAAGTCAATGCTTGAAAAGCAGTGGAGCCTTTCATGTGAG AGAGAAGTTCTTACGGAGCATCCGAGGCAAGAGAAAAGCAGTAAGAAAGTGGCAGTAACTTGTTCCGGGGTGTCTGCGAG GCAAAGAAGAATAAATACCAAGAGGAAGATCCCTGGTAAAACTGGCTCTGCGATGCAAGCTTGTGATGCTATGCAGATGA GGTCCTTGATCAGTCCTGAACTGCTTCAAAACCGTTCGAAGGGCTATGTGAAAGGTGTAGTGAGTGAGCAATTGCTCTCT CATGCTGAAGTTGTAAAGCTATCGGAGAAAATTAAAGTTGGCCTTTCCTTAGATGAGCATAAGTCCAGGTAATTGCCTAT ATTTTTGATCCTTTGTTACTCACTAATTAAATTGATGAAAAATCTCTTCCTTTTCATAGTTTTCCCTGTTGGTTATGTCA TTGTAATTGTAAAACTTAATGATTCTCTTACTTGAAAGAATACAATGTTGTTGCTTACAATGCAATTTTGCTGCTGAAGT TTTATACCTGAATGTTTCTCTTAATCCAACAATCTGAAGAGGAAATAATCAATGATCACATTGGTAAAGATTGGTTCTAG CTTGCCTGGCAAGAAAATATGCTTTTGTTCTTTGCAATTGATTCTGTGAAGCTATGATTTTAGTGGTTTCAAATTCTTAC AACTTCCCTGTTCAAAGCTCTAATCTTAATGCCAGAGCCGTAGCTTTCTTGACAAGTTTATATATAATACTGAGCCACAA CTTTTTTAGAGGTGGAGAGTGGGCAACTAATTCGAATTTCCTTCACATTATTAATACTTGTTAGCTTTCAAGTTTCAACA ATATATTGATAGTGGTAGAGACAGAAATATTGGTACTTTTTATCTGAGATAATCTAAGATAATTGTGTTAGGATGGAGAA AAGGTTGTAATAAAGCATTATGCATTTATCCACTTCTTACACAAGATAGTTGCCTTCTATAATGAAGAAAACATATTCTT CAAATACTTTGTTTATTTTTATATCATGAGGAAATTCTGCCATATAACTTGGTAACTTGACTTCTTTTGGTTGTGGGTTT ACGTTAAAGAGAATAATAGTTGACATATACTCATTGCAAACCTTTAATATGAGTTTCAGACTGAAGGAAAAATTAGGATG TGAACCCTCAGATGATCAAATTGCAGCTTCATTGAAGATTTCTCGATCTGAACTACGAGCAAAAACGATAGAGTGTACTT TGGCAAGAGAAAGGCTGGCTATGAGCAATGTTCGATTAGTTATGTCTATTGCTCAAAGATATGATAATATGGGGGCTGAA ATGGCTGACCTTGTTCAGGTGATTATATAGATTTTTGTTTTAACCTCATATCGAGCTAGCTTCCTCTGTTCTGATATACT CAGCTTCTTTTCTTTGTAGGGTGGCTTGATTGGACTACTTCGTGGGATTGAGAAATTTGATTCTTCAAAAGGGTTTAAGA TTTCAACTTATGTTTATTGGTGGATACGTCAGGTGAGGCTTGCTTGTTTATGAGAGTTTCTCAGACATGTTTTTTTATGG CTGATTTTTCTGTGAAGTACTTGCATAATTCCTTTTCTCTTTTTTTTTTTTTCATTAGTTATGGAATCCTATAATTGTGT TATAAGTATCATGCAAGGGTATTTTACAACTCGAAATTGTCCAACCACCATTAATAATGTTTTTCTGCTGACAGGGGGTT TCAAGAGCTCTAGTTGAGAATTCGAGAACATTAAGATTGCCTACTCATTTGCATGAGAGGTTATCTTTGATCCGCACTGC AAAGTTTAGACTGGAAGAGAGAGGCATTACTCCAACTATTGATGTAAGTCAGCCAAATGGGTTCACCGTTAGAAATATAA TATAAAGTCATTCATGAGGCTTCACCCAACATCTTAAACTTTAAAATAGTTGGTTCATGGCATACTTCTTCTGTAATTTA GAATTCTGGAGTTTGACCCTTGTTGCCCCGTTATCTTAAAACAGTTGAATTTAAGTACAAAGGTATATGAGTCTCTGCAT TGTCCACTTAAGACTCAATCACCATGGCTTCCCAGCAGATTAAGGGCAATGAGCTCTTGTGGGAAAGAGTGTGTTAGAAA TATAATGTGTCCACACCTAACAGCTTAAACTTTTAGGATAGTTTGTTCATGACTTTAAAAAAAGAAACTGCAGTCTGTAT CAAAAATTTTAAAACTTTGAAGTACGAATAGACTGGCCTGAGCTGTTCCTTTGTTTTGCAGAGAATTGCAAAAAGCCTTA ACATGTCCCAAAAGAAAGTCAGAAATGCTACAGAGGTAACAGAATCATTGAGAGCTACATGATCCTCATACATTGAGTGT AATATCCTATTGTCCATTTGTTCACTATGTATTTACATATCACAGGCTATCAGCAAAGTTTTCTCGCTTGATAGGGAAGC ATTCCCCTCTCTGAATGGTCTTCCAGGAGATACTCATCATTGTGTAAGTGTTGATTGATACTGTTCTACTAGTCCATCAA GGAAGATTGTTAGAACAGCTTTTTTTACTCCTTTGCCTATTTCTTTTTCCACCAAAAATATCAACTTCTTATTCTTTTTA TCTTCCCCTTGCAGTACATTGCAGATAATCGACTGGAGAACATCCCATGGCATGGAGTAGATGAGTGGACACTGAAGGTA TTTTGGAAAATATCTGAATGAAACCTGACTTAATTGCAAAGCATAGGATTGTTTGAATACCTGTTATCCTGTAATGCTCT TTTATTTTGATCCTTTTTTAAGTATATTTACATCAAGTAGATGCCATTGGACTATCACAGAATATCTACATAATTTTCAC AGTGGATTATATGATGACATTAGGATGATTATAAGCATTGCAGCATTGATGTATTATAAATATGCTATTATAGAAATTAA AAATTATGTTAAAACATAGTTTGTTAATAAAAACTACTGCTGAAGCCAGGATGAGATTCTTCCAGTAATAGGGCCAATTT TTTTTATGAATGCTAAAATTAAACTTCTTTTACAGATAAGCCTGCACAATAGTTGCTCTTCTGTTTTTTCATTAATTTTT TTTTCATTGCAGCACTTATGCTCTACACTTTCATAAGGATTAATAATTTATACCACTTGTGAATATTCACAGGATGAAGT GAACAAACTCATCAATGTGACCCTTGTGGAACGAGAGAGAGAAATTATTCGTCTTTATTATGGATTAGATAAAGAATGTC TTACGTGGGAAGACATTAGTAAACGGTAAGTTCTACAGTGATTTTCTAATCATTTCTCAAATGCCCTTGTGAAACTAAAA TTTTGCATTTTATGCGTCACCTTATTTGATCCATCCATAGCATATTTTTTTATAACTCACTCATTGCTCTCGTTTACTCC ATTTGTTGGAGCTTTCTGGTTTTCTTCTCAAATTGATATCACTTATATGTTTTAAGCTGAAATTAGCTTGAAAGGGTCAC ACTAATAGTGTGTTTGATTCTCCTGTTGGAAGTCTCCTAATCACTTTGGTGGAGAAGCTACAAAGTGTAGCTTTAGAGTT ACTGTGCTTTGGATTATGTACCACCACGAATTCAAACACACTATAAATTGATAGCAAATTTGACTCAACTTATTTTTTCT CAGAGTCAATTTTGGAACCCAGAAGCTACTCATAGAATCTTCTCCCCAAAATTGCTTTTGCCTTTAGATCCAAACACGTG TTGAGTCATGTTAGATGTTTATTTCTCTTTAGCACATGCATAACAGCACTGCTTCCCCCTCCCTCTTGTTCTCAGTTCAT ATTCTGTTTCATGACACTAGTTGTGTTCGTTATGCAGGATAGGATTGTCTAGAGAAAGAGTAAGGCAAGTTGGGCTTGTT GCATTGGAGAAACTAAAACATGCCGCAAGGAAGAGAGAGATGGAGGCCATGCTATTGAAACATTGATATAACTCTTCATG AAGACATATTACAGTGTATATATACAGAAAGGAAGGATGTACCTAGAAAATTGTCTTCCTTGTCCAAAATAGATGAAAGA GGACGATACAAGGGAACATTGAAGATTTGTAAACCTTGTAAAAATATTGACTGTTGGGAAAATTATGTTTTATCAAATAT GTTGAGGGTTTAAATTATATGAATCTCTGCCTCTCTGGTGACAGTTTCCAGGGAAGACATGTATATAGATGAGTTTCATG AGCTAGTTGCAGTTATGGTGAGAAATAGTAGTAGTATAGTATGAACTGTTAATGAGTACAAAGAGGACCTAAGGTCCCGT TTGGAAAAGCAGCTTAATTAAGCACTTATGGTCATAAGCGCTTATGACATAAGCACTTATTCATAAGCTATTTTTGAAAA TTTATTGAAATAAATTAAAAATAAGCTGTATATAAGCATAAGCTGTTTTTCATAAGCTATCTGAGTAGCTTATGAAAATA AGCTGAAAAGAGCTTATGACAGGTCATAAGCTGTTTGCATAAGCTCTCCCAAACACTGGCATAAGAGCTT
CDS sequence (LotjaGi3g1v0544500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTGCTGCAGTTATTGGACTCAGTGGAGGGAAGAGGCTATTGAGTTCATCTTACTATTACTCTGATATTATAGA AAAGCTTTCTTGTAGCAGTGACTTTGGGTCCACACACTATCAGATTGTTCCTGCAAAATCGGTAACGGTTGCCAAGAAGT CATCCGACTACACACAAGCTTTTCCGGCATCTGATCGGCCGAATCAGTCTATCAAGGCTCTTAAGGAACATGTTGATGGT GTCCCTGCTGCTGCAGAGACATGGTTTCAAGAATGCGATTCTAATGACTTAGAGGTGGAAAGCTCTGACTTGGGTTACTC TGTGGAGGCTCTTCTTTTGCTGCAGAAGTCAATGCTTGAAAAGCAGTGGAGCCTTTCATGTGAGAGAGAAGTTCTTACGG AGCATCCGAGGCAAGAGAAAAGCAGTAAGAAAGTGGCAGTAACTTGTTCCGGGGTGTCTGCGAGGCAAAGAAGAATAAAT ACCAAGAGGAAGATCCCTGGTAAAACTGGCTCTGCGATGCAAGCTTGTGATGCTATGCAGATGAGGTCCTTGATCAGTCC TGAACTGCTTCAAAACCGTTCGAAGGGCTATGTGAAAGGTGTAGTGAGTGAGCAATTGCTCTCTCATGCTGAAGTTGTAA AGCTATCGGAGAAAATTAAAGTTGGCCTTTCCTTAGATGAGCATAAGTCCAGACTGAAGGAAAAATTAGGATGTGAACCC TCAGATGATCAAATTGCAGCTTCATTGAAGATTTCTCGATCTGAACTACGAGCAAAAACGATAGAGTGTACTTTGGCAAG AGAAAGGCTGGCTATGAGCAATGTTCGATTAGTTATGTCTATTGCTCAAAGATATGATAATATGGGGGCTGAAATGGCTG ACCTTGTTCAGGGTGGCTTGATTGGACTACTTCGTGGGATTGAGAAATTTGATTCTTCAAAAGGGTTTAAGATTTCAACT TATGTTTATTGGTGGATACGTCAGGGGGTTTCAAGAGCTCTAGTTGAGAATTCGAGAACATTAAGATTGCCTACTCATTT GCATGAGAGGTTATCTTTGATCCGCACTGCAAAGTTTAGACTGGAAGAGAGAGGCATTACTCCAACTATTGATAGAATTG CAAAAAGCCTTAACATGTCCCAAAAGAAAGTCAGAAATGCTACAGAGGCTATCAGCAAAGTTTTCTCGCTTGATAGGGAA GCATTCCCCTCTCTGAATGGTCTTCCAGGAGATACTCATCATTGTTACATTGCAGATAATCGACTGGAGAACATCCCATG GCATGGAGTAGATGAGTGGACACTGAAGGATGAAGTGAACAAACTCATCAATGTGACCCTTGTGGAACGAGAGAGAGAAA TTATTCGTCTTTATTATGGATTAGATAAAGAATGTCTTACGTGGGAAGACATTAGTAAACGGATAGGATTGTCTAGAGAA AGAGTAAGGCAAGTTGGGCTTGTTGCATTGGAGAAACTAAAACATGCCGCAAGGAAGAGAGAGATGGAGGCCATGCTATT GAAACATTGA
Protein sequence (LotjaGi3g1v0544500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATAAVIGLSGGKRLLSSSYYYSDIIEKLSCSSDFGSTHYQIVPAKSVTVAKKSSDYTQAFPASDRPNQSIKALKEHVDG VPAAAETWFQECDSNDLEVESSDLGYSVEALLLLQKSMLEKQWSLSCEREVLTEHPRQEKSSKKVAVTCSGVSARQRRIN TKRKIPGKTGSAMQACDAMQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEP SDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKIST YVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDRE AFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRE RVRQVGLVALEKLKHAARKREMEAMLLKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 509 | 504 | 5.3E-239 | – | |
| PANTHER | 6 | 509 | 504 | 5.3E-239 | – | |
| Gene3D | 50 | 340 | 291 | 1.2E-33 | – | |
| SUPERFAMILY | 195 | 340 | 146 | 1.21E-37 | ||
| TIGRFAM | 266 | 496 | 231 | 2.0E-23 | ||
| Pfam | 272 | 339 | 68 | 2.1E-16 | ||
| ProSitePatterns | 294 | 307 | 14 | - | ||
| PRINTS | 294 | 307 | 14 | 3.2E-18 | ||
| PRINTS | 318 | 326 | 9 | 3.2E-18 | ||
| Gene3D | 341 | 392 | 52 | 3.1E-8 | ||
| SUPERFAMILY | 342 | 398 | 57 | 4.27E-6 | ||
| Pfam | 349 | 418 | 70 | 3.8E-11 | ||
| SUPERFAMILY | 426 | 499 | 74 | 5.79E-13 | ||
| Gene3D | 431 | 509 | 79 | 5.1E-18 | ||
| CDD | 436 | 494 | 59 | 3.19553E-7 | – | |
| Pfam | 446 | 495 | 50 | 2.4E-10 | ||
| PRINTS | 447 | 459 | 13 | 3.2E-18 | ||
| PRINTS | 467 | 482 | 16 | 3.2E-18 | ||
| PRINTS | 482 | 493 | 12 | 3.2E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | DNA-templated transcription, initiation | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0544500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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