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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0545000 |
| Transcript ID | LotjaGi3g1v0545000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peroxisomal membrane protein 11 homolog; TAIR: AT3G47430.1 peroxin 11B; Swiss-Prot: sp|Q9STY0|PX11B_ARATH Peroxisomal membrane protein 11B; TrEMBL-Plants: tr|A0A1B5Z789|A0A1B5Z789_TRISU Uncharacterized protein; Found in the gene: LotjaGi3g1v0545000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96112946..96113829) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACACAACCACAGCCACATTCCTACTCCAAGCATCATGACTGATACAGTGGACAAACTGGTCATCTTCCTAGCAAAG AGAGATGGTATTGACAAGCTTGTCAAGACCTTCCAGTATGTCTCTAAGCTTGTCAACTGGCATGTGGAAGCCACAAACCC TGACATGTCCAAGAGGTTCAAGCAATGGGAAGTTGCCTCAGGTCTCAGCAGAAAAGCCTTCAGAACTGGCAGGTTTCTAT TTTCCAAAACTTCTATTGTTTTAGCTTTTCATTTATTTTGCAAAACTTTCAGTTGTTTTAGAAATTCAATATTATTTATC GCATTTTCTTCCACCTGTATTTACTCTTTACTTGTTTTTTCTGGTTCCATCCTGAGCAGGTTCCTGACAGGATTCAATGC TCTTAGGAGAAATCCAGGTTCCAACAACACTCTAAGGCTTCTAGCAGTGCTTTCTAATGCAGGGGAAATGGTTTACTTTT TCTTTGACCATTTTCTTTGGCTGTCAAGGATTGGAACCATAGATGCAAACTTGGCGAAGAAGATGAGCTACATATCAGCC TTTGGTGAGGCTGTGGGGTATGTTTTCTTCATCATAGCTGATTTCATTTTGTTGCAAGAAGGGTTGAAGGCAGAGAGAAA GCTGAAAGAAGGGTCCAAGGAAAAGTCATCATCATCAGAAGAAGAGAAAGAGAATGAGAAAAGGATTCAGAAGATTAGAG GTGATAGGATAATGAGGCTAATGGCTGTGGCTGCAAATGTTGCGGATTTGATCATAGCATTGGCAGAGATTGAGCCTAAC CCATTTTGCTGCCACACTGTTTCTCTTGGTATTAGTGGCTTGGTTTCTGCTTGGGCTGGTTGGTATAGAAACTGGCCATC ATAA
CDS sequence (LotjaGi3g1v0545000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGATACAGTGGACAAACTGGTCATCTTCCTAGCAAAGAGAGATGGTATTGACAAGCTTGTCAAGACCTTCCAGTA TGTCTCTAAGCTTGTCAACTGGCATGTGGAAGCCACAAACCCTGACATGTCCAAGAGGTTCAAGCAATGGGAAGTTGCCT CAGGTCTCAGCAGAAAAGCCTTCAGAACTGGCAGGTTCCTGACAGGATTCAATGCTCTTAGGAGAAATCCAGGTTCCAAC AACACTCTAAGGCTTCTAGCAGTGCTTTCTAATGCAGGGGAAATGGTTTACTTTTTCTTTGACCATTTTCTTTGGCTGTC AAGGATTGGAACCATAGATGCAAACTTGGCGAAGAAGATGAGCTACATATCAGCCTTTGGTGAGGCTGTGGGGTATGTTT TCTTCATCATAGCTGATTTCATTTTGTTGCAAGAAGGGTTGAAGGCAGAGAGAAAGCTGAAAGAAGGGTCCAAGGAAAAG TCATCATCATCAGAAGAAGAGAAAGAGAATGAGAAAAGGATTCAGAAGATTAGAGGTGATAGGATAATGAGGCTAATGGC TGTGGCTGCAAATGTTGCGGATTTGATCATAGCATTGGCAGAGATTGAGCCTAACCCATTTTGCTGCCACACTGTTTCTC TTGGTATTAGTGGCTTGGTTTCTGCTTGGGCTGGTTGGTATAGAAACTGGCCATCATAA
Protein sequence (LotjaGi3g1v0545000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDTVDKLVIFLAKRDGIDKLVKTFQYVSKLVNWHVEATNPDMSKRFKQWEVASGLSRKAFRTGRFLTGFNALRRNPGSN NTLRLLAVLSNAGEMVYFFFDHFLWLSRIGTIDANLAKKMSYISAFGEAVGYVFFIIADFILLQEGLKAERKLKEGSKEK SSSSEEEKENEKRIQKIRGDRIMRLMAVAANVADLIIALAEIEPNPFCCHTVSLGISGLVSAWAGWYRNWPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 82 | 82 | - | – | |
| PANTHER | 2 | 232 | 231 | 7.4E-128 | – | |
| PANTHER | 2 | 232 | 231 | 7.4E-128 | – | |
| Pfam | 5 | 230 | 226 | 2.2E-57 | ||
| Phobius | 83 | 100 | 18 | - | – | |
| TMHMM | 83 | 105 | 23 | - | – | |
| Phobius | 101 | 119 | 19 | - | – | |
| Phobius | 120 | 143 | 24 | - | – | |
| TMHMM | 120 | 142 | 23 | - | – | |
| Phobius | 144 | 181 | 38 | - | – | |
| Phobius | 182 | 200 | 19 | - | – | |
| Phobius | 201 | 232 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of peroxisomal membrane | The component of the peroxisomal membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Peroxisome fission | The division of a mature peroxisome within a cell to form two or more separate peroxisome compartments. |
Expression pattern of LotjaGi3g1v0545000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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