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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0546500 |
| Transcript ID | LotjaGi3g1v0546500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Terpene synthase; TAIR: AT4G16740.1 terpene synthase 03; Swiss-Prot: sp|B9RXW0|TPS7_RICCO Alpha-farnesene synthase; TrEMBL-Plants: tr|A0A151TLR2|A0A151TLR2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0546500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96291480..96296027) extracted from Lotus japonicus Gifu genome v1.2.
ACTCACATCATATACATGACACTTATTTCTCTTCCTTCTATTTCTATCTCTTTGCATGTAGATAGAATTGAGGTGTGAAA AAGTTATTTATTTTTTTTTGACAGCAAAAATAAACTTTATTGAATAAGAGATTGAAAAGCACCATGAGAACAAGCCTCTC ATAAGAGCAAAAAAACCAAACCACATAAAAAACTCCTTTTGGGGAAGCACACTTGGGACAGAGCCTCATTAAAACCTTTA TTAGGAAAACCCAGTGGGAAAAACCTAGTAAAGGAAAAAGAGTACTCAAATCACCAAGAGAATAAAACCCCCTAAAAAAA CCCATTACACCCACCATTGAACTAACACCAAGACAAACCCTTATCTACCAAAAATAACAATTACGTGGCCCAATCTGTTA TAAAGCTTAAGACAATCCTCCAAACATACAGTAGCAGCAAACCAGCTCCCCATTAGTCACCAATTCAATAAGTTCCATCG AAACCTCGATATCAAACCACACCAACCAAGCATATAACAAGTTCATAGGTAAAAACCCACAGAAAACAAAATCACATGTC CGCAACCCCCATCCACCACAAATAAATCTCGAGGAAACAAACCAAGTGACCTTCAATCAGTCACAAAAACACAACCTTCC CCATAAACATCATTGCAACTCATGATGATTTAATTGGATTTGATTCTTAAGTCTTTGAATCATCATCTCTTCATCACCAT TGTAAACCACCCCCACCTGTTTCCCAACCTTCCATGTCTGTCGAGCCCTTGAATCCAGGTCCATAAAATCAAACTCATCG TCATAACACATTAAATCCACTTCCGCCTGTTGTTTTGACTTGTTCTTGCTTCCCCTTGGTCTTCCTCTCTTGGATGGGGG TGGGGCCAAAAATTTGCAACAAATTGGATTAAGGATGCTTCCTCTCTGTCCATCAATATCAACGATATTGTTGAAAGAGT GGTCCATGCTTTGGAGCTTCCATCCCATTGGAGAGTCTCATGGTTTGATGTCAAATGGCATGTTAGGCAATACCAAAAGG AGAAACATATGGACCCCATTTTGCTTGAATTGTCTAAATTAAACTTCAACATAATTCAGGCCAAACTTCAAAAGGAGGTT AGAGAACTGTCAAGGTATACATCTTTTGAGAATATTTTTTTTTTTAAAAAAAATTGATAGTTCACACTTCACACTAACTT CTCTACATATCAATGTTACCAATTTTTCCTTTCCACCCCTATCTTAGTTTCCTAACAAGTCATGATTCGTGTATAATACT TCACTCTTATATTCTGCCTATATCTGAGTGTAAGTAAAATTGAGGTGAATAAATTATTTTCTAAAAAGATGTAGCGAAAT GTATATATAAGACCACCAATTAATCTTTATTTTTTATTTAGGTGGTGGAAGAATATATTGGCCTCAAAATAGACTTGAGC TTTAATATCTTTATACTAATTTTTTTTTCTCTACTATCTCATTTTCTCTTAATATCTTTCTTTTTTCTTCAATACATCAC TCACATCATATACATGACACTTATTTCTCTTCCTTCTATTTCTATCTCTTTGCATGTAGATAGAATTGAGGTGTGAAAAA GTTATTTATTTTTTTTTGACAGCAAAAATAAACTTTATTGAATAAGAGATTGAAAAGCACCATGAGAACAAGCCTCTCAT AAGAGCAAAAAAAACCAAACCACATAAAAAACTCCTTTTGGGGAAGCACACTTGGGACAGAGCCTCATTAAAACCTTTAT TAGGAAAACCCAGTGGGAAAAACCTAGTAAAGGAAAAAGAGTACTCAAATCACCAAGAGAATAAAACCCCCTAAAAAAAC CCATTACACCCACCATTGAACTAACACCAAGACAAACCCTTATCTACCAAAAATAACAATTACGTGGCCCAATCTGTTAT AAAGCTTAAGACAATCCTCCAAACATACAGTAGCAGCAAACCAGCTCCCCATTAGTCACCAATTCAATAAGTTCCATCGA AACCTCGATATCAAACCACACCAACCAAGCATATAACAAGTTCATAGGTAAAAACCCACAGAAAACAAAATCACATGTCC GCAACCCCCATCCACCACAAATAAATCTCGAGGAAACAAACCAAGTGACCTTCAATCAGTCACAAAAACACAACCTTCCC CATAAACATCATTGCAACTCATGATGATTTAATTGGATTTGATTCTTAAGTCTTTGAATCATCATCTCTTCATCACCATT GTAAACCACCCCCACCTGTTTCCCAACCTTCCATGTCTGTCGAGCCCTTGAATCCAGGTCCATAAAATCAAACTCATCGT CAGAACACATTAAATCCACTTCCGCCTGTTGTTTTGACTTGTTCTTGCTTCCCCTTGGTCTTCCTCTCTTTGCTTTAGGC TTGACCACTTTTCGACCTCCCCCAGCAGCACCGGGCCCTCCTACCCTTTTCCACCAATTAATGTTTTTTTATTTTTTATT TAGGTGGTGGGAGAATCTTGACCTCCAAAAAGACTTGAGCTTTGCAAGAAATAGGTTGGTTGAAAGCTTCATGTGTGCAG CAGGAGTTGCATTTGAGCCCAAGAATAAATCCATAAGGAATTGGCTCACTAAAGTAATTATTTTCATCCTAGTGATTGAT GATATTTATGACATACACGCCTTATTTGGAGAACTGGAGCTGTTCACAATGGCATTTGATAGGTTTGTTTATTTCTAAGC CATTCAAAAACTAAGCTTGCTTATCACATGTTTCAAGTTACTTGAAAGAATTTCTCAATTTCATTACGTTCATGCATACA GATGGGATGCCAAAGAACTTGACGAACTTCCTGATTACATGAGGATTTGTTTCAATTCACTAAAAGATGTCACAAATGAA ATTGCTTATGAGATTGCCGGAGAAAAGAACTTTGATATGGTGTTAGCTTACCTAAAGAAAGCGGTACTATTACTAATTAA TCATAACTAATTTTGCTTAAGTGTCATTACATAGGGAACATATCAGGTGAGAGATCAATATATTTTATTTTCAAAATAGT GTCATAATTTTATGTTTTACTAATAAACTATTGTCATGTTAAATAAAAATAGTAGTACATGACTGAATTAGATACAAATT TACATGATAGTTTTTAATTGTGATGTGAACATTTTATTTGTGAGATGGAGAATGAGACAATGAATTCAATCATATAATGT CACATTATTTTTGAAAAAGTCATATAACCACTAAACAATTTTTAATCTCAAACAATGTATATAATTGTACAGCAAAGATT TAGTATTTTCATCTCTCATACTAAAAACTTCTCTCAAGATACATCTCACACACACATATACATTTATATATATATATATA TATATATATATTCTTTTGTGTAAAAAAATACTAACAATATTTATTTTTCAATACTTTAATTCTTTAATTGATTAGTTAAA ATTCATGTGAAATCTGCAAAAAATATAAGTTGCTTTTTTAAGTGAGACCCAGATGAATATTAATCAATCAATTAAAGAGA TTTGAAAAAAGAGAGTTAAAATAAGTGTTATTAACATTCTGCGTGTAAAAAGCCTAAAAGGCATATATATAGCAAATAAA TAAATGAAACTAAATGTTGATAACTTATCAATGTCCCCCTTAACTTTATAGTGGAGAGACTTCTGCAATGCATTATACAC GGAAGCAAAGTGGTACAGAATGGGATACATTCCATCATTGCAAGAATATCTCAGCAATGCTTGGATTTCTTCTTCGGGTC CAGTAATTCTCCTCCATTCATATTTTGCTACAATGCATGAAGTAGCCGATGACATTGACAATTTTCTACACACATATGAA GATTTGATCTACAATGTATCTCTTGTAATTCGACTATGCAATGATTTAGCTACTTCAGTGGTAATTTACTAATTTTTCAT TACCTCAAATAATTTTATTTTGTTAATTATTTCATTTTGCTATTTTAATCAAATGATGTTAATATAGAATAAGGTATCAT ATGCAACAGGCTGAAAAGGAAAGGGGTGATGCTGCCTCGGCTATTTTGTGCTACATGAATCAAATGGGTGCTTCAGAGGA AGAAGCAAGAAAACATATCCACAACACCATAAACAATGCATGGAAAAGGATAAATGGGCATTGCTTCACACAAGATGCTT CAGTGGAGCCATTTCTTACTCAAGCCCAAAATGCTGCTAGAGTGGCCCATACCCTTTATCTAAATGGTGATGGGTTTGGC ATTCAGGACAGAGACATTAAAAAGCACATTTTATCACTGCTTGTTGAACCCTTGTAGAAGTTTCTGGATCTTGCTCTCTC TTTTTTATGAAATGGAAGATGTGTGTTTTAGAGAAAAATGAAGTGTAGAATTATGGATCCATTATTATAAGTCAGTTGGT GATGATGCTTTAGCTAAGCATAGTCTAGGGTTAGACAATAGACAGTGCAACTACGTTATACTGAAGGGACTCGTAGGTTG TTTTCTTTTGTTTTTATTTTCGGTCTGCTAAGCACACCTAATTCATCGAAAAAAAAGTAAAATTGTGA
CDS sequence (LotjaGi3g1v0546500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCCCATTTTGCTTGAATTGTCTAAATTAAACTTCAACATAATTCAGGCCAAACTTCAAAAGGAGGTTAGAGAACT GTCAAGGTGGTGGGAGAATCTTGACCTCCAAAAAGACTTGAGCTTTGCAAGAAATAGGTTGGTTGAAAGCTTCATGTGTG CAGCAGGAGTTGCATTTGAGCCCAAGAATAAATCCATAAGGAATTGGCTCACTAAAGTAATTATTTTCATCCTAGTGATT GATGATATTTATGACATACACGCCTTATTTGGAGAACTGGAGCTGTTCACAATGGCATTTGATAGATGGGATGCCAAAGA ACTTGACGAACTTCCTGATTACATGAGGATTTGTTTCAATTCACTAAAAGATGTCACAAATGAAATTGCTTATGAGATTG CCGGAGAAAAGAACTTTGATATGGTGTTAGCTTACCTAAAGAAAGCGTGGAGAGACTTCTGCAATGCATTATACACGGAA GCAAAGTGGTACAGAATGGGATACATTCCATCATTGCAAGAATATCTCAGCAATGCTTGGATTTCTTCTTCGGGTCCAGT AATTCTCCTCCATTCATATTTTGCTACAATGCATGAAGTAGCCGATGACATTGACAATTTTCTACACACATATGAAGATT TGATCTACAATGTATCTCTTGTAATTCGACTATGCAATGATTTAGCTACTTCAGTGGCTGAAAAGGAAAGGGGTGATGCT GCCTCGGCTATTTTGTGCTACATGAATCAAATGGGTGCTTCAGAGGAAGAAGCAAGAAAACATATCCACAACACCATAAA CAATGCATGGAAAAGGATAAATGGGCATTGCTTCACACAAGATGCTTCAGTGGAGCCATTTCTTACTCAAGCCCAAAATG CTGCTAGAGTGGCCCATACCCTTTATCTAAATGGTGATGGGTTTGGCATTCAGGACAGAGACATTAAAAAGCACATTTTA TCACTGCTTGTTGAACCCTTGTAG
Protein sequence (LotjaGi3g1v0546500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPILLELSKLNFNIIQAKLQKEVRELSRWWENLDLQKDLSFARNRLVESFMCAAGVAFEPKNKSIRNWLTKVIIFILVI DDIYDIHALFGELELFTMAFDRWDAKELDELPDYMRICFNSLKDVTNEIAYEIAGEKNFDMVLAYLKKAWRDFCNALYTE AKWYRMGYIPSLQEYLSNAWISSSGPVILLHSYFATMHEVADDIDNFLHTYEDLIYNVSLVIRLCNDLATSVAEKERGDA ASAILCYMNQMGASEEEARKHIHNTINNAWKRINGHCFTQDASVEPFLTQAQNAARVAHTLYLNGDGFGIQDRDIKKHIL SLLVEPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 327 | 327 | 6.91E-94 | ||
| Gene3D | 1 | 327 | 327 | 7.5E-124 | ||
| SFLD | 3 | 326 | 324 | 0.0 | – | |
| SFLD | 3 | 326 | 324 | 0.0 | ||
| PANTHER | 4 | 313 | 310 | 6.5E-143 | – | |
| PANTHER | 4 | 313 | 310 | 6.5E-143 | – | |
| Pfam | 6 | 271 | 266 | 2.1E-91 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Terpene synthase activity | Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. | ||
| Molecular function | Lyase activity | Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. |
Expression pattern of LotjaGi3g1v0546500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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