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LotjaGi3g1v0548800.1

Overview

Field Value
Gene ID LotjaGi3g1v0548800
Transcript ID LotjaGi3g1v0548800.1
Lotus japonicus genome version Gifu v1.2
Description Methyltransferase; TAIR: AT5G13710.1 sterol methyltransferase 1; Swiss-Prot: sp|Q9LM02|SMT1_ARATH Cycloartenol-C-24-methyltransferase; TrEMBL-Plants: tr|V4VHY5|V4VHY5_9ROSI Methyltransferase; Found in the gene: LotjaGi3g1v0548800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:96534119..96540021) extracted from Lotus japonicus Gifu genome v1.2.

AATCCCTCAGGACGCGGCCAATTCTCTCAATAATCTCCGCCTCCGGGAAGATCCCTTTCCCTTTCCCGGCGTTCGATGTA AGATTCATAATCAATCCCACATTCCCTTCAACACCATCAATCTCTCAAAATCAAATTCTGTTTCTTATTTTTTCAATCAC TCTACATGCCTATATATGATCATCATCATCATTCACATGCAGAGTTTTTTTTTTCTGTGTTTAGATCTCAGCAAGTTCCG TTTGAATTCTGCGAGTGGTATCCGAAGCTCCGACAATGAATCTGGCATCCGGCGTCGGTGGAAAGATGGAGAAATCCGAA GTTATCTCCGCTGTTGACAAGTATTTTGTTTTTACTTTGCCTATCGCATTGTAAATTGCCATCAGTGTTTTAAATTGCAG TCGCGTCACGGTTTTGTAAACCTACAAAATCTTGACGTCGCAGCCAAAACCACTGCGGCGCGTGGACATGTTTGGTTTCA CTATTTGCAAATAATCTAAACAAGATTTTTATTTTATTTTATTTTAAAGAGAAGTGATTCGTGAACATTTCACCGTGGAA TCAAACATGGGCTGTATTGTTTTCGTGAGAGGGCGTGCAATTGGAAATATAGAGATTTTAATTGTAGTTATTATAACTTA TTATGGCTGATCAAGTGTGTATTTGAGCTTTTTTCAGGTATGAGAAGTATCATGTTCATTATGGAGGTAAAGAGGAAGAG AGGAAAGCTAATTACTCTGACATGGTAAGAGATATTAATTGCTAACTTAATTTTGAAATAGAAAACAAATATTTATCAGG TTTTGGTAATTGTATAGTTGTATATCAATCACCTTCTTGTCAGCAGCATGCTATTGCTATTAATTTGGATGTCTGACTAA CCAATTGCATGTTGGCATGTGTACAATATTGATAATGATAGTCATTAGTCAAGTGCATGTTGGCATATATGTCCAATTAA CAATCTGTTTTTTTGTTATTATGAGTGTGAGTTAGGTTCCCATAAAAATCAATTTTGTTAGAGTAAAATTATTTTTGGAT GAGAAATATGAATGTTTGAAAGTAATTTTCATTTTTTTTTTTAAATCTAAAACCAATTGTGACAAATTTGTTCTATACAC ATGTTCACATTTCCTTTGTTTTCTGATATCCTTTTCCAGTCACTTGTGATGCTGTATATACTAGGCAATTCATATGCCAT CTTGATTAAATCAACACAAAGTGTATTATAAGATATCTATTTGTTTTTCAGGTTAATAAGTACTATGATCTTTCTACTAG CTTTTATGAGTTTGGCTGGGGGGAATCATTCCATTTTGCAGCCAGGTATCCATTTGTTTTATTCTGCAATTGCAAATTGA AGGATTATCTTTGAATCTTTGAAACTTACCTCACACTCAGGATTGCTGCTAATTTTCTTCTCATTCAGATGGAAAGGGGA ATCTCTTCGAGAGAGCATCAAAAGACATGAGCACTTCCTTGCTTTACAGCTTGGCCTGAAGCAAGAAGATAAGGTTTTCA TATGTTCAATGAAGCAAATTAACTGATATCTCTGTTTTACTACATGTCAACGAAAATTCTTGAGTTTTTTCTTTCTGTTC TTAGGTTTTAGATGTTGGATGTGGAATTGGGGGACCACTAAGAGAAATTGCTAGATTCAGGTAAATGGAACTTCCTTCGT CGAGTGTTTTATTCCTTTGCCTTCTTAGCTCGTGTACTGGTTCATAAAATTAATTCTGTATGTTCCTGACTGTTCTTTTA TTAAAAGCGGCCTCATGCTCAATAATATTCCACAAAATTTATTTTTTGACCCAGCGCAAGAGCGTCAAGTGATCCATATA ACCGACATCACTTTAGTGAGATAAAAGGCTTTTGTCATTGTTTGTTTCTGACATGTTTTTTTTGCTTAGATAGACATTCT GTTCTGTAAATTCAGCTCTTTATTACTATTATTACCAGTTGAGTTGCATCTTGAGTTTCAAGCCTATATACTATGCATGA TATTATTTATAATTAGAGGAAATCAAGGGGAAACAAGTGAAGCATAATGTTGTGTTAAAATTTAAAGATTTGGATTTATT TCCTCTTGGGTTAAATTTCTAATGTCTTGCAGATAGTTTTCGTTCGTGCATTATAAAATGGAATGTAATGTTAGCATTCT ACCTCGAACATTCCATTGGTACCAAGTATTGAATAGGTTGTCTAGATGTCCATTTATAAGGATCGGAATTGATTCTCCAT TGTTAAAATTAATTGAGTGTTCTATTAATTAATAATTCTACATCCAAAGCTACTTTTGGGTTAAAACTAAAAAAACTAAC TTTTACATAATCAATGTTGGAAATCATAGCTGGATTAACGATGTCCCTCTACAGAAATCATTTTTCTCGTAAATTTAACC AAACATACACCACTTTACTTTTAACTCACTTCTATCCAGTGTTACTAAATCAATTCTGAAAACGCTGATCCAAATATGAA CTTAATTGCCTCTTGCAGCAAGGCATCAGTCATAGGGCTGAACAACAACGAGTACCAGTTAACAAGAGGAAAGGTATGTG TTGTGAATATGCAATGCATAGGCAGTGCAATTTGAACATTTAATATTCTTATCTTAAATTCTTAAAATTTTTATTGATGA ATAAGTTATGTTGGTTTTCCACATTTTAAAGTTGAGATTGACTAGTTATAATCTTAAAAAATTAGCATTATGAGTTTTCA TCAATTAACAGGAGCTCAATCGCATTGCTGGAGTGGACAAGACTTGCAGCTTTGTCAAGGTTGATCTTCTGTAAACAAAT TATTTACTTTTTGTTGGGGAGAGTGAGGCCTTTTATGTTTTAGCCTATATTAATCCAGTTTCTGTACCATTGTTACCATT CTAATCTTATATTGCATTATTTCTTTCTTCTCTTTGGGTGTTGAAAAGTTTGAGGGGTTGCATTGGATAATTTTGACAAT GAAATTGTATGATTTAAGGTCGTAGCTGACAGTGTAATGATTGTGATATTTTGATAATGCAGGCTGACTTCATGAAAATG CCATTCCCAGACAGCAGTTTTGATGCAGTGTATGCAATTGAAGCTACCTGCCATGCTCCAGATGCTGTAAGTGGTAGTTT TCCTTCTAGCATTTTTGAATCTAAAAACTTCTCTTTTCTCCAAATCAATTCTGAAAAACCAGAAGCTACTCATTCATGCT TCTCTTTCAGAATTGATTCTGGGTTTAGAATAAATTCTAGAGAGATCTCCAAAACATGCAATTACTCTAATTCACTTTTC ATCAATCTTTGTCCCTCCTGCTAAAAATAGCATATCAATTTGACAACAAGTAATCTGGACCAAATTTCAATGTGGTCTTG CCTAACAGCATTAAGTGGATGACTGTGAATTTACAAAGTTCTGTTTTTAATTGGAATTGTCTTAAACTTTTTTTTCCGGA TATGTAATTATGGCTAGTACGGATGCTACAAAGAAATTTTTAGAGTGTTGAAGCCTGGCCAACATTTTGCTGCATATGAA TGGTGCATGACTGATGCTTATGATCCCAACAACAAAGAACACCAAAAATTAAAGGTATATATGATACAGAGGTTAAAAGA ATTTAGATGGATGATATCTTTGATTATCTTCTACTCTTTCCCTTCCCTCAAATTGGTTTGATTATCTTCTATTCTTTCCC TTCCCTCGAATTGGTTTGTAATTCTATAGATAAAATTAATCGGTACAGGCTGAAATTGAGATTGGCAATGGACTTCCTGA TGTTAGATCGACCACAAAGTGTCTTGAAGCTCTGAAAGAAGCAGGTTTTGAGGTGAACATTAACCTCTTTACCCTCCACC ATAGTTATTGAAATTGGAAGGTCGGTTTGACCTGTTGAACTAGGACTGGGTCAAGTGAAAACAGATCAAATAGGATCAAA ACCTGTGAAAACCAGTCACGAGTAGTAACATTTTTCATAACTTTGTTTATAATTTAAAAAGAAATGATTTTATTCAAATA AAGTCAAATGTCTCACATAAATTTCTTAACTTTTAATCTTCTATCTTAATATACTATTTAACATATTATCTATATTAAAA AATTAATTATCACTGTTTTGACCGATAAAATCAATTACACCCACGTGAATCAAAATTTTCACCGGTTCTATGGCCAGTCC GATTTTGAAAAGATTTCCCTATAGTAATATTGTTTTTTGAATATTTAAGAGATGAACCACCTAATTGGTTAAGGGGAGAT TTGATTCTTTTTGTGCATGCATGAAGGTAATTTGGGATAAAGATCTTGCACTTGACTCTCCTCTTCCTTGGTACTTGCCT TTGGATACAAGTCACTTCTCACTCAGCAGCTTCCGCCTAACTACTGCTGGAAGATTTGTCACAAGAAATCTGGTATTGCT ACTGCATATCATATTTTGCTTCCAATGCTTTGGTTTCACTTTAGGATTCATGTGTTTGTATTATTAATTGAAATATTGTG GGTTTCTAAATTTAATTGTTTGTAGGTCAAGGCTTTAGAATTTGTTAAACTGGCTCCAGAGGGAAGCCTAAGGGTTCAAG ATTTCCTGGAGAAGGCTGCTGATGGACTGACTGTAGCTGGAAAGTAAGTTATCCGTTAATCCATAATTATTGTATTTAAT GGATGCTCGGCCTCATGATTTGCACAATATCCAAGACACGCTTGCTAGAAACTAAAACTTGTACTATGATTCTAGAGTAT TTTACAGTCCAACCAATCATGCTATGAAAGTGCATCTAAAAAAAAGTGGAGTTAGAATTGATGCAACAATAACCAAGCTT TTTCTTACTAGGTGTAATTAGCTGTGTCATAAATCTGTCATAAATTATGTTTAAAGATAGACCATTTATCTATAAAATTA TCGCTCATCTGATTAACCCTTGTAACCAGTTCTTCTATCAGTATTAGAAGTGTAGTTAGAATTGGTACAGAAGAAAAAAT TAGAATTGAAATCAGGGTGCTCTCTAGTATTAGGCTATAGGCATATGATAATCAGGACAAAGTTTTCTTTATATAGCGCC TCTAAGCCCCAAAGGAAATGTTGATGAACTAAATATATGTTTGGAAATCCTATTTAATGCATGTTTGAAAATTCTTCTGC AATTGGTTCTAAATCCAAAATTAATTTTGGGAAGAAGCTTCTAGGAGTAGCTTCTGCCTTCTAGATGTCAGAATTTATTT TGGTGAAAAATAATCTTATCCAAATATGCGAAGAGAATAAGTTATTTCAAAAAATAGCTAATAGAAGTAGCTTTTGTGGT AGAAAGAAGTAATTCTTAGAATATTAGAAGTGGATGCAAACACACTAAAAATATAAATGTAACTTATGATTTGTTTTTTC TCTGAATCATTGGACTCTCAAACTAAACCTTTTAATGATGCTTTTACAGGAAAGAGATTTTCACGCCAATGTTCTTCTTT TTGGCAAAGAAGCCAGGAGGAGGCTCAGGAGGCTATCACAGCGACTAGCGTGTTTGGATCGGCAGTATACACACAGTTTA AAAAAAAGTGACAATTCATTAGCTACACTTTATAGCTTCTTTCTATAAGTGATTATGAGTGTTCCAACCTCTAAATTAAA CACACTCTAATATGGTGTTGTAAATTTAGGCCATAAAGTGAGTCTTGTTGTTTTATGTCTTTTCTATGTTTAGTTTGCCA TGATTTCACTTTGCTTGTTATTTGCCGAAGCAGTATTGGCCTTATGTTTCACTAGAAGATGCTGAATTCTCGTAATAGCC TCTTGACTCTTGTCTCTTGAGCCCTTACTATTTGTTTTGATGAAAAAAAAAACATAGTTTTTTGTATTAAATGATTTAAC CTTAAAAATATTTTAGTAACTTATGTTTCTTAAACTTAATAATAGAATATTAATTGATTCGGG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0548800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATCTGGCATCCGGCGTCGGTGGAAAGATGGAGAAATCCGAAGTTATCTCCGCTGTTGACAAGTATGAGAAGTATCA TGTTCATTATGGAGGTAAAGAGGAAGAGAGGAAAGCTAATTACTCTGACATGGTTAATAAGTACTATGATCTTTCTACTA GCTTTTATGAGTTTGGCTGGGGGGAATCATTCCATTTTGCAGCCAGATGGAAAGGGGAATCTCTTCGAGAGAGCATCAAA AGACATGAGCACTTCCTTGCTTTACAGCTTGGCCTGAAGCAAGAAGATAAGGTTTTAGATGTTGGATGTGGAATTGGGGG ACCACTAAGAGAAATTGCTAGATTCAGCAAGGCATCAGTCATAGGGCTGAACAACAACGAGTACCAGTTAACAAGAGGAA AGGAGCTCAATCGCATTGCTGGAGTGGACAAGACTTGCAGCTTTGTCAAGGCTGACTTCATGAAAATGCCATTCCCAGAC AGCAGTTTTGATGCAGTGTATGCAATTGAAGCTACCTGCCATGCTCCAGATGCTTACGGATGCTACAAAGAAATTTTTAG AGTGTTGAAGCCTGGCCAACATTTTGCTGCATATGAATGGTGCATGACTGATGCTTATGATCCCAACAACAAAGAACACC AAAAATTAAAGGCTGAAATTGAGATTGGCAATGGACTTCCTGATGTTAGATCGACCACAAAGTGTCTTGAAGCTCTGAAA GAAGCAGGTTTTGAGGTAATTTGGGATAAAGATCTTGCACTTGACTCTCCTCTTCCTTGGTACTTGCCTTTGGATACAAG TCACTTCTCACTCAGCAGCTTCCGCCTAACTACTGCTGGAAGATTTGTCACAAGAAATCTGGTCAAGGCTTTAGAATTTG TTAAACTGGCTCCAGAGGGAAGCCTAAGGGTTCAAGATTTCCTGGAGAAGGCTGCTGATGGACTGACTGTAGCTGGAAAG AAAGAGATTTTCACGCCAATGTTCTTCTTTTTGGCAAAGAAGCCAGGAGGAGGCTCAGGAGGCTATCACAGCGACTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0548800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNLASGVGGKMEKSEVISAVDKYEKYHVHYGGKEEERKANYSDMVNKYYDLSTSFYEFGWGESFHFAARWKGESLRESIK RHEHFLALQLGLKQEDKVLDVGCGIGGPLREIARFSKASVIGLNNNEYQLTRGKELNRIAGVDKTCSFVKADFMKMPFPD SSFDAVYAIEATCHAPDAYGCYKEIFRVLKPGQHFAAYEWCMTDAYDPNNKEHQKLKAEIEIGNGLPDVRSTTKCLEALK EAGFEVIWDKDLALDSPLPWYLPLDTSHFSLSSFRLTTAGRFVTRNLVKALEFVKLAPEGSLRVQDFLEKAADGLTVAGK KEIFTPMFFFLAKKPGGGSGGYHSD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR44068
1 335 335 1.7E-194 –
PANTHER
PTHR44068:SF3
1 335 335 1.7E-194 –
Gene3D
G3DSA:3.40.50.150
17 269 253 1.3E-57 –
SUPERFAMILY
SSF53335
39 335 297 1.44E-49
IPR029063
ProSiteProfiles
PS51685
48 335 288 111.894
IPR030384
CDD
cd02440
97 192 96 1.13761E-15 –
Pfam
PF08241
99 196 98 3.4E-20
IPR013216
Pfam
PF08498
271 335 65 3.3E-27
IPR013705

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006694
Biological process Steroid biosynthetic process The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0548800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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