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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0550200 |
| Transcript ID | LotjaGi3g1v0550200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cation/H(+) antiporter; TAIR: AT3G52080.1 cation/hydrogen exchanger 28; Swiss-Prot: sp|Q8L709|CHX28_ARATH Cation/H(+) antiporter 28; TrEMBL-Plants: tr|I1LNW3|I1LNW3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0550200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96717783..96722555) extracted from Lotus japonicus Gifu genome v1.2.
CTCATGCAGTGTCCAATTGAGAAACAACATTCCTGAAAGTAAGCTATGAATCACAACCACTCACTTCTTCCAAAAGCTTT TGGCAACACAACTGATCATCTTCATCAAAACAAAACAAAAAATGAGAAGGAAAATTTGCCCACATGGTGATGAGAATGTG AAGAAGAAAAATTATTATAGGGTGTGTAACAAGCTAGAGAGAAAGAAAGCCAGGATACACACAAATATACATATTTGATA TCAAATCTCAATCATGCCAGTGGCCATAACCCAATGTTCACAGAGGCTAGGAGGCCTCATATTTGAACTAGGCCTAAATT TCGTTATCTTTTTAGGGATGGTGATTGCATGCAATGCTTTGCATTACATACTAAGGCCTTTTTCACAACCTCGCATTGCT ACTGACATAATTGTAAGCTTCCCCTCACATAATCAACAATTCTCAAATTTGCATTTACTTTAGCACTTCTAAATCATTTT CAGTGCATGCTAGGAAACCCCTCTACTCATTTTTGCATGTTTAGTTTCACAATTTGCATGGCTTCAAACGTGCAAAATAT CAATTCTAGGGAGAATAGCTTATGGTATATTTGGATCCTCTGTAGCAGAATCTATGCTACAGCATCCCTTCTCCTGTCCT GCATAACTATAGTCATTGATTCTTGTAATCAATGGCTAACGTTAATCTAAATATTATATAGCTTGTTGGCCGGAGTGAAT TTGAATTCAAACTTTTTGTAAGTAGTTTTTGGATTCCATAATTGATTATGAGGAAAAATAAGTTGATCCAAACATGCTAT TAGTTATGTATGAAAATCGATTTTGATAGAATCGATTATAGAAGCTATTCTGAAAGTCTTTTCTCAGAATCAATTCTAAG TCCTAGAAGCTACTCCCCAGATTGATTCTGGCTTTAAGATCAACTATAGGAGAATTTCCAAAGATGCACTAAACAATAAT GGTATCCAGAAGGGTGAAGATAAAGTTTCTGATGTTAGCTGTTATGTTCATGTTCATGCAGGTAGGACTAATTCTGGGCA ATGTATCATTTTTACGTGGCCCATATGACAAGTTCAACAAAACCTTTGGATTTATCATTGATTTTGGCATGGTGTGTTAC ATGTTTGCTTTGGGTATAGAAATGGATCCTTACATACTCCTTAAAAGACCAACAAAGGATGCACAAGTTTCTTTTGCAGG AATCATCACCACATTCTTCCTTGCATGTTTCACATCCCCCCTTCTCTATTACTTCTCAGATCAACACGGTATACAATTCA CCCTGGCCTTCTCAACTCTCCTCTCTAGTACAGCGTCACCGGTTCTCACACGCCTAATAACACGCCTCAAGATAGGGAAA TCAGATATCGGGAAGCTTGTCATAGGAGCAGGGATGTACTCAGATTTTATATGCTCTTTTCTTCTCTCAGTTGGCTACAT TTCCATGCCATTGGACACAATGTGCACTCCTTATGCAGAGAAGAATCGCATTCAGAAGTCAATCAAAATGGGGCTTGCTG TTCTTTTTCAGACTGTGTTCACAGCGCTGGTGTCACCAATATTCATCAACTGGGTTAACAATGAGAACCCTGAAGGGAAA CCCATGAAAGGTTCACACTTGGTGCTGTCAATTGCCTTTATGGTCATGATTTGTGCCTCCTCAACTCTATACGCTTACAC TCCAATTCTAAGTGCATTCATGACAGGGATATGGTTTCCCAGGGAGGGAAGAGTTTCCAAATGGGTTATCAGCAAAATTA ACTACATGCTAACCACCCTTTTCTTTCCCATATTTTTCTTGTGGATGGGGTATGCAGCTGATTTCAGGCAGTTCCATCCT GGAGAAAAGGACACATGGATAAGATTGTTTGCATCCATTGGAATAGTAATAGGAGGTAAAGTTGTTGGAACAGTTGTTTA TGGGGCTATTCTTGGCTTTCACTGGCCTGAATCAATTGCAATAGGATTGCTTCTCACCATCAAGGGACATTTTCATATCT ACATGGCTATCAAAGTGGCAAGTATTCTCTTCGTTTCTTTTGAATTCGGATTCCTGCAGCTAGAGAATCCTGAATTCAAT GAAATCATATGTTCATAGCCATCGCATCAAAACCGCACGGTCCAGATTTAATAAAACTATTTTAATACATAGTAACCTCT TTAAATCTGAACCATTGGCTCTTTGATCAGACGGCAGTGAACCCCTGACTTCATCGAATGCAGGGATTTCCTGACTGCAA GGAATCGAGGTCCGTTTCTTTCTCCACAATGCAAGATAGTTGTTTGACCATTTACCTATATTTATCATGTCAAATTTCTA GCATGGTAAATTTTATAATGTCTCAAAGTGATGTCAACTGCATGCATTTATGTGTATGTTAGTATATAGAGTCCAAAGTT TCTATTCTATGTTTGGCTGAACTCACATAGCACTAGCAGCATGCATGTATGCGTAAGTTAACCCAGAGAAAGGCATGGTT CTTCAACTGTTAGAAGTATGAATGAATTTTGATGAGACATATTCCTTCACCAATGATACAAAGTGTAGCACTTGAATTTT GCTTCTTGTACTTCTTGAAATCCAAGTCATTTGAAAATCTAGGATATGAGCATTATGCAGGCAAAAGCACAGAAGAGCCC TAGAAAAGATATTTACTTGGAATCTATCTCTCTCTTGATATTTCTGCAGGCATATTTGAGAATCTATGAAGGGTTTACAA GCTCACATATAAATTATTATTGTCAAACTAAATATGCATGCAGCAGAAAGCATGAACTCTCAGTAGTAACTGCACTCTTT TCCAGCATTGTAACAAAATTAACAGAAATCTTGTTTACCATTGAATCATGTCATGAACCAATGATCCCAAAGGATTAAAC TGTTGGGTGAAGATGCATAAATAATCTTATATTATACTTGGAACACAACCCCTTCGTCAAGAGCTCATTGGGCTTGAAAC ATAGACAATGTATAAGGTTCCCTACCTTGTGTTGAAATTAATAGGGGGAACAAACCATTAATTGCACATGAATGATTATA CTATACTAACAAACCAATCTCATAGGTTGTCCTTTTATTACCAGATTGGTTGTGGCACCAGCACTTCTTCCGGCATTGGA TTGATTATTGCAATATTTTTCACAGTTGTGCATGCCCCCAGTGTTGTGGCACACATCATCAAACGTGCCAGGAAAAGGGC ACCTACTCACCGCATGGCCCTCCAATTGCTTGATCCATCAAGTGAGCTAAGGATACTCCTGTGTCTTCATGGACTTGAAA ACGTTCCTGCTTCCATCAACTTAATGGAGATCTCAAGAGGGATAGCAGACCCTGGCATTCTGGTTTACGTCACAGAAATG ATTGAACTAACTGATCAATTAACAGCCACAGCAGAGAAGGGTGAAGGAGTAGAAGCAACAACTGTAAAAGACAAGGCAGT CATTGACATGAGGGACCAAATAACAAGCTTATTTCAAGCCTATGTTGATGAGGATGGTGATGGAATCACACTCAAAAGAA CAGTGGCAGTGTCAACAATCAATAACATGGCACAGGACATCTGCAATTTGGCAGAGGATTTGATGATGGCCCTCATCATA TTACCCTTCCACCGGACCCAGCGCCAAGATGGAAAACTGGATGGTGGCCATCAAGGTTTCCGATACGTGAACCGAAAGGT AATGTCATGAACTTGAACCTAAGATCTCTTATCCAAACTGAAGTTTGAGGTTCTGAACAAATACAAAAATTATTCTCACC TATACAATATTGTCTTATGAAAATGAAAGATGAAAATCTTCACAGAATGAAAATACACTCAAGCCATTGTAATCTTGTCC TTCCATGCGAAAATCTTAGATAGCATGTTTAAGTTAGCAGTTACTGTCTATCCTATATGCTTTATGGTCTTATTAGTGTG GATTGTGCAATGTTTACCGGTAAGTACTTTAATAGCTCAACTAGCATGCATTTTTCCAATAACAGATGTTTTGATTAACA GTTATTGAGGAATGCTCCTTGTTCCGTGGGGATTCTAGTGAACAGAGGCTTAGGATCCATTTCAAAGATATCAAGATCTC AGGTACCGCTCAATGTGGCAACAATATTCATAGGTGGCAAAGATGACAGAGAAGCACTTGTTTATGCCAGTCGAGTAGCG CAGCACCCGGGAGTGAAGCTTACAGTTATAAGATTCCTGGTAGATACCAGTGCAGAATCATCAAGAATAGCAGCTTACAG GGTTACCCTACCAGAAGAGGATGAGTCGGGGCTGGATGATGAATGCTTTGCACAGTTCTATGAGAGACATGTAGTTGGAG GTCGAATTTCCTATACAGAGAAACATCTTGCTAATGCAGCTGAGACCTTCACTACTCTTAGATCATTTGAAGGACAATAC TCACTGGTCATTGTAGGAAGAGAAGGTGGGGTGAATTCTATATTGACAAAGGGTATGAATGACTGGCAACAGTGTCCAGA ACTGGGACCAATAGGGGATGTTCTATCAGGACCAGATTTCTCAAAGACTGTCTCAGTGTTAATAATACAACAACACAAAA TTAAAGGAGAACTAGATGGGCTTGATGATGAGTTCTCCATCATGTAGGAGTGTAGATGGATAGGTAGAGTAGATGTAGAT ACTAATTTGTAGCAAGGAAACAGAAAATTGCTAGAACTGCTTTGTGCAAATTGTAAAGATAAATGAAATTTGACACAATT CTTATCATGCTGACTTCAACTAAGAATGAGACTAACTTTTAAGTGAAAACCAG
CDS sequence (LotjaGi3g1v0550200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGTGGCCATAACCCAATGTTCACAGAGGCTAGGAGGCCTCATATTTGAACTAGGCCTAAATTTCGTTATCTTTTT AGGGATGGTGATTGCATGCAATGCTTTGCATTACATACTAAGGCCTTTTTCACAACCTCGCATTGCTACTGACATAATTG TAGGACTAATTCTGGGCAATGTATCATTTTTACGTGGCCCATATGACAAGTTCAACAAAACCTTTGGATTTATCATTGAT TTTGGCATGGTGTGTTACATGTTTGCTTTGGGTATAGAAATGGATCCTTACATACTCCTTAAAAGACCAACAAAGGATGC ACAAGTTTCTTTTGCAGGAATCATCACCACATTCTTCCTTGCATGTTTCACATCCCCCCTTCTCTATTACTTCTCAGATC AACACGGTATACAATTCACCCTGGCCTTCTCAACTCTCCTCTCTAGTACAGCGTCACCGGTTCTCACACGCCTAATAACA CGCCTCAAGATAGGGAAATCAGATATCGGGAAGCTTGTCATAGGAGCAGGGATGTACTCAGATTTTATATGCTCTTTTCT TCTCTCAGTTGGCTACATTTCCATGCCATTGGACACAATGTGCACTCCTTATGCAGAGAAGAATCGCATTCAGAAGTCAA TCAAAATGGGGCTTGCTGTTCTTTTTCAGACTGTGTTCACAGCGCTGGTGTCACCAATATTCATCAACTGGGTTAACAAT GAGAACCCTGAAGGGAAACCCATGAAAGGTTCACACTTGGTGCTGTCAATTGCCTTTATGGTCATGATTTGTGCCTCCTC AACTCTATACGCTTACACTCCAATTCTAAGTGCATTCATGACAGGGATATGGTTTCCCAGGGAGGGAAGAGTTTCCAAAT GGGTTATCAGCAAAATTAACTACATGCTAACCACCCTTTTCTTTCCCATATTTTTCTTGTGGATGGGGTATGCAGCTGAT TTCAGGCAGTTCCATCCTGGAGAAAAGGACACATGGATAAGATTGTTTGCATCCATTGGAATAGTAATAGGAGGTAAAGT TGTTGGAACAGTTGTTTATGGGGCTATTCTTGGCTTTCACTGGCCTGAATCAATTGCAATAGGATTGCTTCTCACCATCA AGGGACATTTTCATATCTACATGGCTATCAAAGTGATTGGTTGTGGCACCAGCACTTCTTCCGGCATTGGATTGATTATT GCAATATTTTTCACAGTTGTGCATGCCCCCAGTGTTGTGGCACACATCATCAAACGTGCCAGGAAAAGGGCACCTACTCA CCGCATGGCCCTCCAATTGCTTGATCCATCAAGTGAGCTAAGGATACTCCTGTGTCTTCATGGACTTGAAAACGTTCCTG CTTCCATCAACTTAATGGAGATCTCAAGAGGGATAGCAGACCCTGGCATTCTGGTTTACGTCACAGAAATGATTGAACTA ACTGATCAATTAACAGCCACAGCAGAGAAGGGTGAAGGAGTAGAAGCAACAACTGTAAAAGACAAGGCAGTCATTGACAT GAGGGACCAAATAACAAGCTTATTTCAAGCCTATGTTGATGAGGATGGTGATGGAATCACACTCAAAAGAACAGTGGCAG TGTCAACAATCAATAACATGGCACAGGACATCTGCAATTTGGCAGAGGATTTGATGATGGCCCTCATCATATTACCCTTC CACCGGACCCAGCGCCAAGATGGAAAACTGGATGGTGGCCATCAAGGTTTCCGATACGTGAACCGAAAGTTATTGAGGAA TGCTCCTTGTTCCGTGGGGATTCTAGTGAACAGAGGCTTAGGATCCATTTCAAAGATATCAAGATCTCAGGTACCGCTCA ATGTGGCAACAATATTCATAGGTGGCAAAGATGACAGAGAAGCACTTGTTTATGCCAGTCGAGTAGCGCAGCACCCGGGA GTGAAGCTTACAGTTATAAGATTCCTGGTAGATACCAGTGCAGAATCATCAAGAATAGCAGCTTACAGGGTTACCCTACC AGAAGAGGATGAGTCGGGGCTGGATGATGAATGCTTTGCACAGTTCTATGAGAGACATGTAGTTGGAGGTCGAATTTCCT ATACAGAGAAACATCTTGCTAATGCAGCTGAGACCTTCACTACTCTTAGATCATTTGAAGGACAATACTCACTGGTCATT GTAGGAAGAGAAGGTGGGGTGAATTCTATATTGACAAAGGGTATGAATGACTGGCAACAGTGTCCAGAACTGGGACCAAT AGGGGATGTTCTATCAGGACCAGATTTCTCAAAGACTGTCTCAGTGTTAATAATACAACAACACAAAATTAAAGGAGAAC TAGATGGGCTTGATGATGAGTTCTCCATCATGTAG
Protein sequence (LotjaGi3g1v0550200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPVAITQCSQRLGGLIFELGLNFVIFLGMVIACNALHYILRPFSQPRIATDIIVGLILGNVSFLRGPYDKFNKTFGFIID FGMVCYMFALGIEMDPYILLKRPTKDAQVSFAGIITTFFLACFTSPLLYYFSDQHGIQFTLAFSTLLSSTASPVLTRLIT RLKIGKSDIGKLVIGAGMYSDFICSFLLSVGYISMPLDTMCTPYAEKNRIQKSIKMGLAVLFQTVFTALVSPIFINWVNN ENPEGKPMKGSHLVLSIAFMVMICASSTLYAYTPILSAFMTGIWFPREGRVSKWVISKINYMLTTLFFPIFFLWMGYAAD FRQFHPGEKDTWIRLFASIGIVIGGKVVGTVVYGAILGFHWPESIAIGLLLTIKGHFHIYMAIKVIGCGTSTSSGIGLII AIFFTVVHAPSVVAHIIKRARKRAPTHRMALQLLDPSSELRILLCLHGLENVPASINLMEISRGIADPGILVYVTEMIEL TDQLTATAEKGEGVEATTVKDKAVIDMRDQITSLFQAYVDEDGDGITLKRTVAVSTINNMAQDICNLAEDLMMALIILPF HRTQRQDGKLDGGHQGFRYVNRKLLRNAPCSVGILVNRGLGSISKISRSQVPLNVATIFIGGKDDREALVYASRVAQHPG VKLTVIRFLVDTSAESSRIAAYRVTLPEEDESGLDDECFAQFYERHVVGGRISYTEKHLANAAETFTTLRSFEGQYSLVI VGREGGVNSILTKGMNDWQQCPELGPIGDVLSGPDFSKTVSVLIIQQHKIKGELDGLDDEFSIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 784 | 784 | 0.0 | – | |
| PANTHER | 1 | 784 | 784 | 0.0 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 36 | 25 | - | – | |
| TMHMM | 13 | 32 | 20 | - | – | |
| Gene3D | 22 | 426 | 405 | 1.1E-48 | ||
| Pfam | 26 | 417 | 392 | 4.8E-27 | ||
| Phobius | 37 | 47 | 11 | - | – | |
| TMHMM | 47 | 64 | 18 | - | – | |
| Phobius | 48 | 68 | 21 | - | – | |
| Phobius | 69 | 73 | 5 | - | – | |
| Phobius | 74 | 99 | 26 | - | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| Phobius | 100 | 110 | 11 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 111 | 131 | 21 | - | – | |
| Phobius | 132 | 136 | 5 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 137 | 160 | 24 | - | – | |
| Phobius | 161 | 171 | 11 | - | – | |
| Phobius | 172 | 194 | 23 | - | – | |
| TMHMM | 173 | 195 | 23 | - | – | |
| Phobius | 195 | 213 | 19 | - | – | |
| Phobius | 214 | 238 | 25 | - | – | |
| TMHMM | 216 | 238 | 23 | - | – | |
| Phobius | 239 | 249 | 11 | - | – | |
| Phobius | 250 | 272 | 23 | - | – | |
| TMHMM | 253 | 275 | 23 | - | – | |
| Phobius | 273 | 298 | 26 | - | – | |
| TMHMM | 295 | 317 | 23 | - | – | |
| Phobius | 299 | 319 | 21 | - | – | |
| Phobius | 320 | 330 | 11 | - | – | |
| Phobius | 331 | 359 | 29 | - | – | |
| TMHMM | 332 | 354 | 23 | - | – | |
| Phobius | 360 | 364 | 5 | - | – | |
| TMHMM | 361 | 380 | 20 | - | – | |
| Phobius | 365 | 383 | 19 | - | – | |
| Phobius | 384 | 394 | 11 | - | – | |
| TMHMM | 395 | 417 | 23 | - | – | |
| Phobius | 395 | 417 | 23 | - | – | |
| Phobius | 418 | 784 | 367 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Solute:proton antiporter activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0550200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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