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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0553200 |
| Transcript ID | LotjaGi3g1v0553200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LIM domain-containing protein A, putative isoform 1; TAIR: AT5G52950.1 LIM domain protein; Swiss-Prot: sp|Q7N125|SGRR_PHOLL HTH-type transcriptional regulator SgrR; TrEMBL-Plants: tr|G7LBX4|G7LBX4_MEDTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0553200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97055859..97061344) extracted from Lotus japonicus Gifu genome v1.2.
ACGCTTTAATATTTATTTTCTTGTCGTGATGATTTTGACAGAAACTTTTTGGCGGGGTTTAGAAGGCATGTGAGGCGCCA ATTCAAACTCACTCATCTTCTTCTTCTTCTATCGATCTCAATTTTCAATTTTCAATTCTCAATTCTCAATTCTCAATTCT CAATTCTCAATCCAATCCAACCCGAATGGAAATGGATCCGATTACCTCTTACTCCGACACCCACCACACTCTCCTCCTCA TCGATCTCGACCCACTCCTCCACCACCACCACCGTGACCATTACACCAAATCCATCCTCTCCGCCGCCAAAACCCTACTC TCCTTCCCTTCAACTTCTTCCGCTCTCTTCGCCTTCAAATTCTTCTTCTCCTCCGCCTCCCCCTACAAACTCGACCCTTT CCTCCCCGATTCCAACCCCGCCCTCACCTTCAACCTCCCTTCTCCCACCCTCCACCTCCTCTCCCAAACCCTCTCCTCCC TCCCCCACTTCCCTCCTCTCCCCACCAACCACCTCCCCTCAGCCTCCCACCTCTCCGCCTCCATCAACTACTTCATCGGC CATTACACCTGGGACCGCCAAAACAACGCCGCTCCCCTCGTTCCCCCCAATCTGCTCCTCGTCCTCTCCCCCCTCCCCGA ACCCAAATCTCTCTCCGCCTTCTTCCAAAACCACCAGTCGTCGTCGTTCCCAGATGCCACGTCCTTCTGCCAGAGCTTCT CTCGCTCTTTCGGCACCGTCACCCGCGCGTCTGCCTCCTTCGGTATCCATTGTAGTTGGATTGCTGTCAACAATCACAAT CACAATAGTGATGAGGTTGCCAAGATTCGACGGTTGTTTCAGACTGGGGCTGCGAAATTAGGTTGGGGATTTTGCTCTAT TGATTCAATTTTGCTTGGTTCTGCTCTTGTTCCTTTTGGCTTGATTTATCCCAAAATTGGGATTCCATGGTTTTGTATTC GTTCTTGTTCTTCTTCTAGCAAAGCTCAGGTGCAATTGAGTCTTCGGATCAAAGATGTAAATGGGAACCCCATTGAGTAT AACTGTTGTGATCTCGAATTGGTGGATTTCAAAGTAGTTTCAGCTAGAGACGAGAGGGTTCAGTTGAGTCCCAATTTGCA GGCTGGAGGTGGTTGCCAATGGAGGGGGAGATTGTGGAGTCTGTGTTCTGATGGGGCTGCGAAATTGCAGGTTAAGGTTG TGCAGAGGTGTGATGCTTTTGTTAACTTAAGGGGCTGCCTTTATGATTCGGTTCTGGTGCGCGAGGTTTTCAGGGAATCT AAGAAAGAGAGTAAGGGGAGTTCGGATGAGTTTTTCGCTGATAGGGTTCTTGAAATGGTAGCGGCTGAATTTGGTTGCCG GAGGCAGCGAAAATCGGTGCCCATTTGGGAAATTCTGTTGAGTTTTCTATACAAACAAGGTTTCTGGGCATTGGTGACTG TTACCAATGACAAGGGGGGTTCCTGTGTTGGTGTTCTTAGGCCTTTTACTGTTTCTTCTGCTCTATTATCTGTGTTAGGG GATCCACACGTGGCTTGTGATTTTGGCGAAGCAAACTTGGGTCAATATGTTAGGAAGGGGGAGGCTGAGATTTACGAATC TGATCGCAAGTTGAACAAGAGCAAGGATTTGTTGGACTCTCAAGATAAGAAGAGTGATGCGGGAATTACGGGTCTGCAAG AAAAGAAAATGATGGATTTGAGTGCACTTCGTAACCTCACATGGAGCTCCTACTGTGATTTGGTGTATGACCGATTTGAG ACAGATCTGCATGAGGTTTACTATGCTGTGGAATGTAGCAAGTCGAAAAGGTTGAAGTTTTTGAAATGCTGGATGAAACA GGTGAAGAAATCTGGCAGTTCAGATCTCACTTTGTCAGAAAAACCGAAGCCAACTCAGATGATTGCAGAAGAGAGTCAAG ACACTAATAGCACATTGCCTGAGTTGACTCAAAATGGTGACCAGCCAATCTCCCTGTCTGCCTCAGCTGGAATTAACACT GAGGTTTCTCGAATACAGGATGATGCTGCGCTCGATTTTAGGTCCGAAACCTCTGAAGAATATTTCAGTAGTCTTTCCAA CAAGATCCATCAAGGAATTGAATCTGAAGTTATAGACCTTGGAGCTTTGGCAGCGCGACTTGTGAATTCATCTATTTACT GGCTAAGTCAGAAGGTTGATAAGGAAACCATGGATCAGAGTCATTCTCCTCTAAAAGATGATAATGCTAGTGGTAGCAAG GTTGCATCTGAACTGATAAAACTTCTATTAAGGGAGCCTAAGGAGATAGCTGCAGAGCATAAAAGCAGAAGTTCATTTAC TCAGGCATCTGATTCGGGACCTACTACAACAATTACAGATCATTTAGGCAGAGAGTATCCTTTGATCAAGTTTTCCTTAA TTTCTGCATGTGATGCAATTATGATTTAAAATTCTAAATCAGCTATAAAGTTTGATAACTTATTGTTTCATGATTTTCCT CAATGAGTATTAGATATGAATTGCAGATTTTATTTCGGATGGAAATTTTACAATCAGAGGTTGGAAATGGAGTTGAAGAT TCCAGCAAACAGAAGTTTGTTAAACAAATATGCCTGCTTCTAGAGAAAATTCAGTGCCACATGGAAGCGGGATTTGTCGG TGATTGGACCCTTGAAAATTATGTAGCAACAATCATTAAAAACAGGTATTTGTGTATACTTTATTCACTGTAAATGTAAT AGGCTCAGAATATAGAAAGAAAATGTATTTGTTGATACAGCCATGTATTCGAGAAACCTAGTTCTCCCCCACTTTGGATC TTCCAAAGTCCAAGATAAGCCTTCTTTAAACTTCCTCGCTGTTATTCATAATCTCTTATCTCAGATTAGCACCCTAAACT AACTATTCCAAGTTCTAACTAACTCTCTCAAACAGTTACATATCAATATGAGATGTTTTGGATGTTGATTTATACTTATT CTGAAATGCTATATTATGCTTTAGCACAAATGTGGACATTTGTGGAATTCCTAGATTCTATTTGGAGGGTGATTAATAAC AGTCTATTTTCATTACCTATGATTGTTCCAGTAGCTGTTAGAATTGCCTAGTTTGTGATTTGAATCGTATATTTTGACTT GGTTTAGTAAGGCAACAATTCATATGTGATGAATTACAAATGGCTTTGAATTATATTAGACATGAATGAGTCAGTTAAAT TTTGTTCACCGATGTAAATAGCATGATTCAACAATTCATTAATGGCTATATCATTGCGTTGTTTTTGTTCTAACCTGGCA CATGACATGATTTTGTTTTGGGAATTCGGGTTAGAATATATTGAACTATATCGTGCTAACCCGTACTAAGTACCAAAGTT TTGATTAGTTTCTTTTGATTTGCTTCTCTTTTATCATGGAGCAATTGAATTAAGTTGATAACCACATAAAGTATGGAAAT CTCATATACTTATGATAGTTATATCTCCAAAATTTCAGGTATTCTCACACTCTTGAAGATGTCGTTCATAAAATCTACAA CAAAATGGACCTGCTGCCACTGGCAGATGAGGACGATGGCCTAATTAATTTATTTAACAGTGAGGACAGCAACAAGTCCT CGAATTTAAAGGTATACAGAGACGAGATGGGTGAAAATGATATCAGGAATGAACCTGTTTCAGCAGAAAATGAACTCTTT CAGTTGCAGAAGGACTGGGGAATCCAAGGGATGGTAGAGAAGGATCGTGATAAAAAACTCATTGAAGATAAGGAAAGGAG AGAGAGGGCATGCAGATCTCGATTGCAAAGTCTTTGGGCCCCAAAACAGAATGGTGTGAAACTCAAGACAGATCACCTCC AAAAGCTGCCAAAAAGGAAGGAGCGACCAAGGGCAAGCTATGACACAGTATGTGAGACGCCAATGACAAGAAACAAGCGA TCAAGCCAATGTACGAGGGACTGGGAATATGACAGTCGCCTGGCTGATGGGAGTCCTTCATGTGGCTCAGTTTCTAAGGC ATTGTTTCAGGATGATCTTTGATGTGATTAAACCATACCTGACATTCACAGACAGAAATTGTAAATGCTAACTTGCATAG GGAAATAACTCAAGATGGGGGTGCTTCAGTGTTCAACCACAAATGGTGGAATGCTAATGTCTGCACTTCGACCAGGTGTA ACCTAACGAGAAAGGTATGACAGGTTTTTATTCTATCTAAATAATCCCACTGATATCTTTTTTTCTGTTGCTTTCCTCAG CACCTCAAATGATATGCTAAAGCTCATTTGTTAGTTAGGTTTGAGTTTATCAGCATATTTGGATGTGTTGGATACACTCA TACACACTTCAAAGCACATTAGCAAAGTTGCTTCATGTTGTAGCTTACATATTAATGTGATTTTAAGGTTTAACGTGAAT TCCAAACATGCAAGCAAACATGCACTATGATCTATAAGAGGAAAAGGGCTGGACATAAAAGAAATAGACACTACTCTATG TAAAATGCTTTGGATTAGAAGTTTAATGTTAGCTTTCTAGTTAAATCTCAGCATTATTGGTTAGATACCTACCTGTTATC TGTAATTTAATGAAATTCATTGCTAGTGCAAATTTGTAATCATACTATTACAATTTATACCTTTTGAATTATGCTTTGAT CCAAAACATGGATATCTATCACCCTGTGTGCCAAATGCCTATACTGTTTTATTATCCAAATGCTTTTCTGCAAGCTGCTA TTTTTCAAAAACGCCAACAACCATGGTTTGACTTCATTAGTTCTGATACCTCCATCTTTGTCCATGGCTTTGTTCTAATT CATTGACCTCTCATCTTTTTTGTCATTCTTGCCGACCCCAACACTAAGGATCACATAGAATATCTATATAATGCAATCAC TTGTGCAATGCTCAGTTTCTTTTTCATTGGCATCAACTCTGAATTAAAATAACCAACTCACAGAAGCTTCTTTTCAGAAT TTATTTTGGCTTGATAATCTAATTGTAGAAGAGTTTCAAAAAATACACTTACATGAGTATTTGCTGAGGCCTAAGGTGCT GTTTTATTTGTGGAATACAGGGGGAGGAAAGGGAAAAAGGAGGCCCATCAGAAGTGGTGAAGATTGGCCCAATCAACAAA GTGATACAACAATTGGACACTAGATGTTGGAGACAAAAGACCTAGTTGTAAAGGAAGAAAATGGGTCAACCTTCACTCAC GGTATGTGCTACTCTATTTGAGGTCCAAATATTGTTTTTGGACAAGCCCAAATGTCACTGTGTACAAGAAATGTAGGATT TTTTAATTTATAGTTATTAGTAAGGTTTTTTTTTTGAAACTTAGTTATGAGTAAGGTTTTTGTTTTTGTTTTTTTTTTGG TAAGCATGAGTAAGGTTAATGTAATCATTTAATTAATTTTTTGCGATAATTTTACCTAGTACTTATTTATAGTTCAAATG AAGTTGTACATTTTTGGTATTGTATTTGTTCTAATATAAATCTTCC
CDS sequence (LotjaGi3g1v0553200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATGGATCCGATTACCTCTTACTCCGACACCCACCACACTCTCCTCCTCATCGATCTCGACCCACTCCTCCACCA CCACCACCGTGACCATTACACCAAATCCATCCTCTCCGCCGCCAAAACCCTACTCTCCTTCCCTTCAACTTCTTCCGCTC TCTTCGCCTTCAAATTCTTCTTCTCCTCCGCCTCCCCCTACAAACTCGACCCTTTCCTCCCCGATTCCAACCCCGCCCTC ACCTTCAACCTCCCTTCTCCCACCCTCCACCTCCTCTCCCAAACCCTCTCCTCCCTCCCCCACTTCCCTCCTCTCCCCAC CAACCACCTCCCCTCAGCCTCCCACCTCTCCGCCTCCATCAACTACTTCATCGGCCATTACACCTGGGACCGCCAAAACA ACGCCGCTCCCCTCGTTCCCCCCAATCTGCTCCTCGTCCTCTCCCCCCTCCCCGAACCCAAATCTCTCTCCGCCTTCTTC CAAAACCACCAGTCGTCGTCGTTCCCAGATGCCACGTCCTTCTGCCAGAGCTTCTCTCGCTCTTTCGGCACCGTCACCCG CGCGTCTGCCTCCTTCGGTATCCATTGTAGTTGGATTGCTGTCAACAATCACAATCACAATAGTGATGAGGTTGCCAAGA TTCGACGGTTGTTTCAGACTGGGGCTGCGAAATTAGGTTGGGGATTTTGCTCTATTGATTCAATTTTGCTTGGTTCTGCT CTTGTTCCTTTTGGCTTGATTTATCCCAAAATTGGGATTCCATGGTTTTGTATTCGTTCTTGTTCTTCTTCTAGCAAAGC TCAGGTGCAATTGAGTCTTCGGATCAAAGATGTAAATGGGAACCCCATTGAGTATAACTGTTGTGATCTCGAATTGGTGG ATTTCAAAGTAGTTTCAGCTAGAGACGAGAGGGTTCAGTTGAGTCCCAATTTGCAGGCTGGAGGTGGTTGCCAATGGAGG GGGAGATTGTGGAGTCTGTGTTCTGATGGGGCTGCGAAATTGCAGGTTAAGGTTGTGCAGAGGTGTGATGCTTTTGTTAA CTTAAGGGGCTGCCTTTATGATTCGGTTCTGGTGCGCGAGGTTTTCAGGGAATCTAAGAAAGAGAGTAAGGGGAGTTCGG ATGAGTTTTTCGCTGATAGGGTTCTTGAAATGGTAGCGGCTGAATTTGGTTGCCGGAGGCAGCGAAAATCGGTGCCCATT TGGGAAATTCTGTTGAGTTTTCTATACAAACAAGGTTTCTGGGCATTGGTGACTGTTACCAATGACAAGGGGGGTTCCTG TGTTGGTGTTCTTAGGCCTTTTACTGTTTCTTCTGCTCTATTATCTGTGTTAGGGGATCCACACGTGGCTTGTGATTTTG GCGAAGCAAACTTGGGTCAATATGTTAGGAAGGGGGAGGCTGAGATTTACGAATCTGATCGCAAGTTGAACAAGAGCAAG GATTTGTTGGACTCTCAAGATAAGAAGAGTGATGCGGGAATTACGGGTCTGCAAGAAAAGAAAATGATGGATTTGAGTGC ACTTCGTAACCTCACATGGAGCTCCTACTGTGATTTGGTGTATGACCGATTTGAGACAGATCTGCATGAGGTTTACTATG CTGTGGAATGTAGCAAGTCGAAAAGGTTGAAGTTTTTGAAATGCTGGATGAAACAGGTGAAGAAATCTGGCAGTTCAGAT CTCACTTTGTCAGAAAAACCGAAGCCAACTCAGATGATTGCAGAAGAGAGTCAAGACACTAATAGCACATTGCCTGAGTT GACTCAAAATGGTGACCAGCCAATCTCCCTGTCTGCCTCAGCTGGAATTAACACTGAGGTTTCTCGAATACAGGATGATG CTGCGCTCGATTTTAGGTCCGAAACCTCTGAAGAATATTTCAGTAGTCTTTCCAACAAGATCCATCAAGGAATTGAATCT GAAGTTATAGACCTTGGAGCTTTGGCAGCGCGACTTGTGAATTCATCTATTTACTGGCTAAGTCAGAAGGTTGATAAGGA AACCATGGATCAGAGTCATTCTCCTCTAAAAGATGATAATGCTAGTGGTAGCAAGGTTGCATCTGAACTGATAAAACTTC TATTAAGGGAGCCTAAGGAGATAGCTGCAGAGCATAAAAGCAGAAGTTCATTTACTCAGGCATCTGATTCGGGACCTACT ACAACAATTACAGATCATTTAGGCAGAGAATATGAATTGCAGATTTTATTTCGGATGGAAATTTTACAATCAGAGGTTGG AAATGGAGTTGAAGATTCCAGCAAACAGAAGTTTGTTAAACAAATATGCCTGCTTCTAGAGAAAATTCAGTGCCACATGG AAGCGGGATTTGTCGGTGATTGGACCCTTGAAAATTATGTAGCAACAATCATTAAAAACAGGTATTCTCACACTCTTGAA GATGTCGTTCATAAAATCTACAACAAAATGGACCTGCTGCCACTGGCAGATGAGGACGATGGCCTAATTAATTTATTTAA CAGTGAGGACAGCAACAAGTCCTCGAATTTAAAGGTATACAGAGACGAGATGGGTGAAAATGATATCAGGAATGAACCTG TTTCAGCAGAAAATGAACTCTTTCAGTTGCAGAAGGACTGGGGAATCCAAGGGATGGTAGAGAAGGATCGTGATAAAAAA CTCATTGAAGATAAGGAAAGGAGAGAGAGGGCATGCAGATCTCGATTGCAAAGTCTTTGGGCCCCAAAACAGAATGGTGT GAAACTCAAGACAGATCACCTCCAAAAGCTGCCAAAAAGGAAGGAGCGACCAAGGGCAAGCTATGACACAGTATGTGAGA CGCCAATGACAAGAAACAAGCGATCAAGCCAATGTACGAGGGACTGGGAATATGACAGTCGCCTGGCTGATGGGAGTCCT TCATGTGGCTCAGTTTCTAAGGCATTGTTTCAGGATGATCTTTGA
Protein sequence (LotjaGi3g1v0553200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMDPITSYSDTHHTLLLIDLDPLLHHHHRDHYTKSILSAAKTLLSFPSTSSALFAFKFFFSSASPYKLDPFLPDSNPAL TFNLPSPTLHLLSQTLSSLPHFPPLPTNHLPSASHLSASINYFIGHYTWDRQNNAAPLVPPNLLLVLSPLPEPKSLSAFF QNHQSSSFPDATSFCQSFSRSFGTVTRASASFGIHCSWIAVNNHNHNSDEVAKIRRLFQTGAAKLGWGFCSIDSILLGSA LVPFGLIYPKIGIPWFCIRSCSSSSKAQVQLSLRIKDVNGNPIEYNCCDLELVDFKVVSARDERVQLSPNLQAGGGCQWR GRLWSLCSDGAAKLQVKVVQRCDAFVNLRGCLYDSVLVREVFRESKKESKGSSDEFFADRVLEMVAAEFGCRRQRKSVPI WEILLSFLYKQGFWALVTVTNDKGGSCVGVLRPFTVSSALLSVLGDPHVACDFGEANLGQYVRKGEAEIYESDRKLNKSK DLLDSQDKKSDAGITGLQEKKMMDLSALRNLTWSSYCDLVYDRFETDLHEVYYAVECSKSKRLKFLKCWMKQVKKSGSSD LTLSEKPKPTQMIAEESQDTNSTLPELTQNGDQPISLSASAGINTEVSRIQDDAALDFRSETSEEYFSSLSNKIHQGIES EVIDLGALAARLVNSSIYWLSQKVDKETMDQSHSPLKDDNASGSKVASELIKLLLREPKEIAAEHKSRSSFTQASDSGPT TTITDHLGREYELQILFRMEILQSEVGNGVEDSSKQKFVKQICLLLEKIQCHMEAGFVGDWTLENYVATIIKNRYSHTLE DVVHKIYNKMDLLPLADEDDGLINLFNSEDSNKSSNLKVYRDEMGENDIRNEPVSAENELFQLQKDWGIQGMVEKDRDKK LIEDKERRERACRSRLQSLWAPKQNGVKLKTDHLQKLPKRKERPRASYDTVCETPMTRNKRSSQCTRDWEYDSRLADGSP SCGSVSKALFQDDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 944 | 936 | 3.2E-187 | ||
| MobiDBLite | 704 | 723 | 20 | - | – | |
| MobiDBLite | 707 | 723 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | Response to ionizing radiation | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays. | ||
| Biological process | Mitotic DNA replication checkpoint | A cell cycle checkpoint that acts during a mitotic cell cycle and prevents the initiation of mitosis until DNA replication is complete, thereby ensuring that progeny inherit a full complement of the genome. |
Expression pattern of LotjaGi3g1v0553200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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